Rw7G030370

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000164
Physical Location & Seq
Forward (+)
43078324 .. 43080347
2024 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030370.1

Sequence Viewer

Length: 1368 bp
ATGGAATCAAAGGATGATCAAATTTATATTCCTCAAGTAAAGGTAGAGTTGATGCCTAAATTATACCAAGAGTTTGAAACAATAGATGTGCGAAAGAAGCAGGGTTTAGTATTAGAAGTCATTCTAGTGAGTATGTCTGTTATAACTTATAAGCAAGGAGATTCCAAAGTTCAAGGAGAAAAATTACATTTTTTGAGATCTCACCATCGTGTTTCAGAAGTTAACACAGTTCTATCACAACAACTAAGCTTGGTGAATGTGGAGAAACATAAACAGTTTGAATTCTTTGGTGTTCAGGCAGGTGGCATTCAAAATATTGGTTTTATACAGCGTGATCTGTATAATTATGGGAGAATTTGTCGAGAAGAGAAGAAGGAGCATGATGGAGATCTACTGTACATGCATTTTCAGAATGAGAAAGAAAAATATTCTTCTTTTGTCTATACAATGGAGTCAGATGAGGAAAACACAGTAACACGGTGCTTTTGGGCTGACTCAATTTCAAGACGAGCTTACAGCTTTTTTGGAGATGTAGTTATCTTTGATACTACATACAACACAAATTGGTATGGAATGATTTTTGCACCATTCACTGGTGTTAACAATCATGGGCAGACAATCATCTTTGCTTGTGCATTCTTGAATGATGAGACAGCCGATACTTTTGTTTGGTTATTCAAGGAATTTATAAATGCTATGCCAGGAGATGCACCAGAAAATGCGCCCAAGATGATCATTACCGACCAAGATCCTGCTATGACTAAAGCCATTTCAGAATTTAAGAGGGGACTTCTTCACCAACGCCATTCTGAGTTAGAGGAGGATCATATTAATATTGATGAGAAGGCAAAAACTGTCAGTCCCCTTGACATAGAAGATCATATGGCCAAGGTTTATACACATCAACTATTTTATGAAGTTCAAGAACAGTTGAGAGAGAGCTTCAAATATAAACTTGAACTTGTGTTTGAAAATGTCACTCAAGAACAGTTTAAGATCCAAGATATTGATAAATTGCCTATTCAGTACATCTTGATGGGATGGACTAAAGCTGCAAGACAGAGAGTTGTCTTAGATTATAATGGAATGGAGATAAAAGATAACAAAGCTTTACTTGCAAGGAGGACTAAACTATTCCAGCATGCAACATATGCAATTGATAAGGCTATGATGAGTATTGAGGCTACCCAGCTCTTTATGGAAGCATTGGATGCTTTTTTGGAGAATATTAAACCATTAATTAGTAATGAAAGTGGACAAAGTGTAGTAGGTTTGGAGACCGAGACCAAGACTGCTACTATTCAGCATGTTTTTAATGAACCAGATCAAGTGAGAGCAAAAGGGTGTAGGAGAAGGTTGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

455

Amino Acids

52.98

Weight (kDa)

5.69

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 147 - 258 7.6e-09 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 178 - 259 2.1e-20 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 143, 150, 689, 1080
AarI CACCTGC 1 cut(s) 290
Acc36I ACCTGC 1 cut(s) 290
AccB7I CCANNNNNTGG 1 cut(s) 593
AclWI GGATC 3 cut(s) 743, 831, 991
AcoI YGGCCR 1 cut(s) 885
AcsI RAATTY 5 cut(s) 21, 281, 354, 683, 776
AfaI GTAC 2 cut(s) 398, 1028
AfiI CCNNNNNNNGG 1 cut(s) 593
AjnI CCWGG 1 cut(s) 700
AleI CACNNNNGTG 1 cut(s) 207
AluBI AGCT 7 cut(s) 249, 512, 519, 942, 1052, 1109, 1192
AluI AGCT 7 cut(s) 249, 512, 519, 942, 1052, 1109, 1192
Alw26I GTCTC 3 cut(s) 644, 1271, 1277
AlwI GGATC 3 cut(s) 743, 831, 991
AoxI GGCC 1 cut(s) 885
ApeKI GCWGC 1 cut(s) 1052
ApoI RAATTY 5 cut(s) 21, 281, 354, 683, 776
AseI ATTAAT 2 cut(s) 831, 1238
Asp700I GAANNNNTTC 1 cut(s) 120
AspLEI GCGC 1 cut(s) 724
AsuHPI GGTGA 3 cut(s) 194, 265, 788
BaeI ACNNNNGTAYC 2 cut(s) 651, 684
BalI TGGCCA 1 cut(s) 887
BbvI GCAGC 1 cut(s) 1039
BccI CCATC 4 cut(s) 213, 377, 1030, 1035
BciT130I CCWGG 1 cut(s) 702
BclI TGATCA 2 cut(s) 16, 732
BcoDI GTCTC 3 cut(s) 644, 1271, 1277
BfaI CTAG 1 cut(s) 125
BfuAI ACCTGC 1 cut(s) 290
BglII AGATCT 2 cut(s) 197, 388
BisI GCNGC 1 cut(s) 1053
BlsI GCNGC 1 cut(s) 1054
Bme1390I CCNGG 1 cut(s) 702
BmrFI CCNGG 1 cut(s) 702
BmsI GCATC 3 cut(s) 42, 697, 1201
BpuEI CTTGAG 2 cut(s) 18, 966
BsaBI GATNNNNATC 1 cut(s) 387
BsaI GGTCTC 2 cut(s) 1271, 1277
BsaJI CCNNGG 1 cut(s) 888
BsaXI ACNNNNNCTCC 4 cut(s) 343, 373, 519, 549
Bsc4I CCNNNNNNNGG 1 cut(s) 593
Bse1I ACTGG 1 cut(s) 598
Bse8I GATNNNNATC 1 cut(s) 387
BseBI CCWGG 1 cut(s) 702
BseDI CCNNGG 1 cut(s) 888
BseGI GGATG 3 cut(s) 19, 1046, 1216
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 1 cut(s) 593
BseMII CTCAG 1 cut(s) 801
BseNI ACTGG 1 cut(s) 598
BseRI GAGGAG 1 cut(s) 833
BseXI GCAGC 1 cut(s) 1039
BseYI CCCAGC 1 cut(s) 1188
BshFI GGCC 1 cut(s) 887
BslFI GGGAC 2 cut(s) 801, 846
BslI CCNNNNNNNGG 1 cut(s) 593
BsmAI GTCTC 3 cut(s) 644, 1271, 1277
BsmFI GGGAC 2 cut(s) 801, 846
BsmI GAATGC 2 cut(s) 306, 635
BsnI GGCC 1 cut(s) 887
Bso31I GGTCTC 2 cut(s) 1271, 1277
Bsp1407I TGTACA 1 cut(s) 396
BspANI GGCC 1 cut(s) 887
BspCNI CTCAG 1 cut(s) 802
BspMI ACCTGC 1 cut(s) 290
BspPI GGATC 3 cut(s) 743, 831, 991
BspTNI GGTCTC 2 cut(s) 1271, 1277
BsrGI TGTACA 1 cut(s) 396
BsrI ACTGG 1 cut(s) 598
BssECI CCNNGG 1 cut(s) 888
BssT1I CCWWGG 1 cut(s) 888
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 8 cut(s) 229, 276, 396, 472, 480, 856, 930, 990
Bst6I CTCTTC 1 cut(s) 360
BstAPI GCANNNNNTGC 2 cut(s) 1151, 1211
BstAUI TGTACA 1 cut(s) 396
BstC8I GCNNGC 1 cut(s) 1143
BstDEI CTNAG 3 cut(s) 245, 810, 1072
BstF5I GGATG 3 cut(s) 19, 1046, 1216
BstHHI GCGC 1 cut(s) 724
BstMAI GTCTC 3 cut(s) 644, 1271, 1277
BstMWI GCNNNNNNNGC 4 cut(s) 97, 1115, 1151, 1211
BstNI CCWGG 1 cut(s) 702
BstNSI RCATGY 3 cut(s) 403, 1145, 1310
BstSCI CCNGG 1 cut(s) 700
BstV1I GCAGC 1 cut(s) 1039
BstX2I RGATCY 4 cut(s) 197, 388, 748, 996
BstYI RGATCY 4 cut(s) 197, 388, 748, 996
BsuRI GGCC 1 cut(s) 887
BtsCI GGATG 3 cut(s) 19, 1046, 1216
BtsIMutI CAGTG 1 cut(s) 591
BveI ACCTGC 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 1143
CfoI GCGC 1 cut(s) 724
Csp6I GTAC 2 cut(s) 397, 1027
CviAII CATG 5 cut(s) 380, 400, 608, 1142, 1307
CviQI GTAC 2 cut(s) 397, 1027
DdeI CTNAG 3 cut(s) 245, 810, 1072
EaeI YGGCCR 1 cut(s) 885
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
Eco130I CCWWGG 1 cut(s) 888
Eco31I GGTCTC 2 cut(s) 1271, 1277
EcoRI GAATTC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 700
EcoT14I CCWWGG 1 cut(s) 888
EcoT22I ATGCAT 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 888
FaeI CATG 5 cut(s) 383, 403, 611, 1145, 1310
FalI AAGNNNNNCTT 4 cut(s) 496, 528, 1098, 1130
FaqI GGGAC 2 cut(s) 801, 846
FatI CATG 5 cut(s) 379, 399, 607, 1141, 1306
FauNDI CATATG 2 cut(s) 882, 1150
FbaI TGATCA 2 cut(s) 16, 732
Fnu4HI GCNGC 1 cut(s) 1053
FokI GGATG 3 cut(s) 26, 1053, 1223
Fsp4HI GCNGC 1 cut(s) 1053
FspBI CTAG 1 cut(s) 125
GlaI GCGC 1 cut(s) 723
GluI GCNGC 1 cut(s) 1053
GsaI CCCAGC 1 cut(s) 1192
HaeIII GGCC 1 cut(s) 887
HhaI GCGC 1 cut(s) 724
Hin1II CATG 5 cut(s) 383, 403, 611, 1145, 1310
Hin6I GCGC 1 cut(s) 722
HinP1I GCGC 1 cut(s) 722
HincII GTYRAC 2 cut(s) 223, 601
HindII GTYRAC 2 cut(s) 223, 601
HindIII AAGCTT 2 cut(s) 247, 1107
HinfI GANTC 4 cut(s) 5, 161, 452, 494
HpaI GTTAAC 2 cut(s) 223, 601
HphI GGTGA 3 cut(s) 194, 265, 788
Hpy166II GTNNAC 3 cut(s) 223, 601, 1256
Hpy188I TCNGA 5 cut(s) 217, 411, 457, 775, 811
Hpy188III TCNNGA 6 cut(s) 362, 504, 640, 923, 983, 1033
Hpy8I GTNNAC 3 cut(s) 223, 601, 1256
HpyAV CCTTC 3 cut(s) 367, 838, 1347
HpyCH4III ACNGT 8 cut(s) 229, 276, 396, 472, 480, 856, 930, 990
HpyCH4V TGCA 8 cut(s) 403, 584, 635, 710, 1055, 1118, 1145, 1154
HpyF10VI GCNNNNNNNGC 4 cut(s) 97, 1115, 1151, 1211
HpyF3I CTNAG 3 cut(s) 245, 810, 1072
Hsp92II CATG 5 cut(s) 383, 403, 611, 1145, 1310
HspAI GCGC 1 cut(s) 722
Ksp22I TGATCA 2 cut(s) 16, 732
KspAI GTTAAC 2 cut(s) 223, 601
LmnI GCTCC 1 cut(s) 376
Lsp1109I GCAGC 1 cut(s) 1039
LweI GCATC 3 cut(s) 42, 697, 1201
MaeI CTAG 1 cut(s) 125
MaeIII GTNAC 2 cut(s) 472, 976
MboII GAAGA 5 cut(s) 377, 382, 423, 785, 887
MfeI CAATTG 1 cut(s) 1155
MflI RGATCY 4 cut(s) 197, 388, 748, 996
MlsI TGGCCA 1 cut(s) 887
MluNI TGGCCA 1 cut(s) 887
MlyI GAGTC 2 cut(s) 461, 488
MnlI CCTC 7 cut(s) 42, 454, 777, 811, 814, 1116, 1174
Mox20I TGGCCA 1 cut(s) 887
Mph1103I ATGCAT 1 cut(s) 405
MroXI GAANNNNTTC 1 cut(s) 120
MscI TGGCCA 1 cut(s) 887
MseI TTAA 8 cut(s) 222, 600, 780, 831, 993, 1230, 1238, 1314
MslI CAYNNNNRTG 3 cut(s) 125, 207, 1034
Msp20I TGGCCA 1 cut(s) 887
MspR9I CCNGG 1 cut(s) 702
MunI CAATTG 1 cut(s) 1155
Mva1269I GAATGC 2 cut(s) 306, 635
MvaI CCWGG 1 cut(s) 702
MwoI GCNNNNNNNGC 4 cut(s) 97, 1115, 1151, 1211
NdeI CATATG 2 cut(s) 882, 1150
NlaIII CATG 5 cut(s) 383, 403, 611, 1145, 1310
NmuCI GTSAC 1 cut(s) 976
NsiI ATGCAT 1 cut(s) 405
NspI RCATGY 3 cut(s) 403, 1145, 1310
OliI CACNNNNGTG 1 cut(s) 207
PaeI GCATGC 1 cut(s) 1145
PaqCI CACCTGC 1 cut(s) 290
PctI GAATGC 2 cut(s) 306, 635
PdmI GAANNNNTTC 1 cut(s) 120
PfeI GAWTC 2 cut(s) 5, 161
PflMI CCANNNNNTGG 1 cut(s) 593
PkrI GCNGC 1 cut(s) 1054
PleI GAGTC 2 cut(s) 460, 488
PpsI GAGTC 2 cut(s) 460, 488
PshBI ATTAAT 2 cut(s) 831, 1238
PsiI TTATAA 4 cut(s) 143, 150, 689, 1080
Psp6I CCWGG 1 cut(s) 700
PspFI CCCAGC 1 cut(s) 1188
PspGI CCWGG 1 cut(s) 700
PsuI RGATCY 4 cut(s) 197, 388, 748, 996
RsaI GTAC 2 cut(s) 398, 1028
RsaNI GTAC 2 cut(s) 397, 1027
RseI CAYNNNNRTG 3 cut(s) 125, 207, 1034
SaqAI TTAA 8 cut(s) 222, 600, 780, 831, 993, 1230, 1238, 1314
SatI GCNGC 1 cut(s) 1053
SchI GAGTC 2 cut(s) 461, 488
ScrFI CCNGG 1 cut(s) 702
SfaNI GCATC 3 cut(s) 42, 697, 1201
SmiMI CAYNNNNRTG 3 cut(s) 125, 207, 1034
SmlI CTYRAG 2 cut(s) 33, 981
SmoI CTYRAG 2 cut(s) 33, 981
SphI GCATGC 1 cut(s) 1145
SspI AATATT 4 cut(s) 316, 428, 835, 1228
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 700
StyI CCWWGG 1 cut(s) 888
TaaI ACNGT 8 cut(s) 229, 276, 396, 472, 480, 856, 930, 990
TaqI TCGA 1 cut(s) 361
TaqII GACCGA 1 cut(s) 1295
TatI WGTACW 2 cut(s) 396, 1026
TfiI GAWTC 2 cut(s) 5, 161
Tru1I TTAA 8 cut(s) 222, 600, 780, 831, 993, 1230, 1238, 1314
Tru9I TTAA 8 cut(s) 222, 600, 780, 831, 993, 1230, 1238, 1314
TscAI CASTG 1 cut(s) 598
TseFI GTSAC 1 cut(s) 976
TseI GCWGC 1 cut(s) 1052
Tsp45I GTSAC 1 cut(s) 976
TspDTI ATGAA 3 cut(s) 930, 1263, 1332
TspRI CASTG 1 cut(s) 598
Van91I CCANNNNNTGG 1 cut(s) 593
VspI ATTAAT 2 cut(s) 831, 1238
XapI RAATTY 5 cut(s) 21, 281, 354, 683, 776
XceI RCATGY 3 cut(s) 403, 1145, 1310
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 1 cut(s) 125
Zsp2I ATGCAT 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.