Rmu_sc0002200.1_g000013

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002200.1
OG0000164
Physical Location & Seq
Forward (+)
56798 .. 58960
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002200.1_g000013.1.cds

Sequence Viewer

Length: 1329 bp
atggagtcagaggatgatcatgtttatattactcaagtaaaggcagagttgatgcctatattgcaccaagagtttgaaacaatagatgatgttgctgctttctacaatagatatgcaaaagaagcagggtttagtatcaaaagtcattctagtgcaaccaacaaagataatacccaacttatgaggaaggagtacgtctattataagcaaggaacttccaaagttgaaggagaaaaacgtaagagaggattaccaaaagtgggttgtaaagcaagaattgcagctgtgagaaagatggagtctgggagatatgcaatctctgcatttttcgagggtcataactacccattaacaagcccacctagagtacatttgttgagatctcaccttcttgtttcaaaatttaacacagttctatcacagcacctaagcttggtaaatgttcagaaacatacacagtttgaattctttggtgttcaggcaggtgacattgagaatattggttgtacacagcgtgatctgtataattatagaagaacttgtcatgaagcgaaaaaggggcatgatggagatctattgtacatgcattttcaaaatgagaaagaaaaagatccttcttttgtctatacaatggagtcagatgaggaaaatagagtaccaaggtgcttttgggctgactcaatttcaagacgagcttacagcttttatggagatgtagttatatttgaatctacatacaacacaaatcgaaagtttgagagtgaatggcttccatgtcggcatgttttgtcatatttgattaaaatccaagatgttgataaattgcctattcagtccatcattaaaatccaagatgttgataaattgcctattcagtacatcttgaagagatggattaaagctgcaagacagagtcttgtgttagattcttatgaaatggaggtaaaagataacaaagctttacttggaaggaggactaaactattccagcatgctgcagatgcaattgataaggcaaaggtgagtgatgaggctagtcagctctttatggaatgcttggatgcgttcttggagaatattaaaacattgattggtaatgaaagtggacaaagtgtagtagttttggagaccaagattgatgatattcagcatatttttaatgaaccaaatcaagtgaaggccaaagggtgtgggaaaaggttgaaaaaaggaaaagagaagaggaaagttaaggtaaaggagagtcaaggtaggcaatgccatggatgtggactattggttagtcacatgacaaaagaaattgtccaacactgcattaactgtgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

442

Amino Acids

51.02

Weight (kDa)

8.88

Isoelectric Point (pI)

42.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AarI CACCTGC 1 cut(s) 473
Acc36I ACCTGC 1 cut(s) 473
AclWI GGATC 1 cut(s) 605
AcsI RAATTY 2 cut(s) 401, 464
AdeI CACNNNGTG 1 cut(s) 515
AfaI GTAC 6 cut(s) 194, 369, 508, 581, 657, 878
AfiI CCNNNNNNNGG 2 cut(s) 260, 433
AgsI TTSAA 9 cut(s) 77, 227, 399, 464, 593, 687, 728, 886, 1204
AluBI AGCT 7 cut(s) 284, 432, 695, 702, 902, 959, 1042
AluI AGCT 7 cut(s) 284, 432, 695, 702, 902, 959, 1042
Alw26I GTCTC 1 cut(s) 1121
AlwI GGATC 1 cut(s) 605
AoxI GGCC 1 cut(s) 1179
ApeKI GCWGC 4 cut(s) 95, 281, 902, 995
ApoI RAATTY 2 cut(s) 401, 464
Asp700I GAANNNNTTC 1 cut(s) 768
AsuHPI GGTGA 3 cut(s) 377, 497, 1033
BbvI GCAGC 4 cut(s) 82, 293, 889, 982
BccI CCATC 4 cut(s) 289, 560, 845, 885
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 1121
BfaI CTAG 3 cut(s) 150, 363, 1035
BfmI CTRYAG 1 cut(s) 996
BfuAI ACCTGC 1 cut(s) 473
BglII AGATCT 2 cut(s) 380, 571
BisI GCNGC 4 cut(s) 96, 282, 903, 996
BlsI GCNGC 4 cut(s) 97, 283, 904, 997
BmsI GCATC 3 cut(s) 42, 991, 1051
Bpu10I CCTNAGC 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 18
BsaBI GATNNNNATC 2 cut(s) 570, 803
BsaI GGTCTC 1 cut(s) 1121
BsaJI CCNNGG 2 cut(s) 659, 1261
BsaXI ACNNNNNCTCC 2 cut(s) 702, 732
Bsc4I CCNNNNNNNGG 2 cut(s) 260, 433
Bse3DI GCAATG 1 cut(s) 1262
Bse8I GATNNNNATC 2 cut(s) 570, 803
BseDI CCNNGG 2 cut(s) 659, 1261
BseGI GGATG 3 cut(s) 19, 1066, 1271
BseJI GATNNNNATC 2 cut(s) 570, 803
BseLI CCNNNNNNNGG 2 cut(s) 260, 433
BseMI GCAATG 1 cut(s) 1262
BseXI GCAGC 4 cut(s) 82, 293, 889, 982
BshFI GGCC 1 cut(s) 1181
BslI CCNNNNNNNGG 2 cut(s) 260, 433
BsmAI GTCTC 1 cut(s) 1121
BsmI GAATGC 1 cut(s) 1058
BsnI GGCC 1 cut(s) 1181
Bso31I GGTCTC 1 cut(s) 1121
Bsp1407I TGTACA 2 cut(s) 506, 579
Bsp143I GATC 5 cut(s) 16, 380, 517, 571, 610
Bsp19I CCATGG 1 cut(s) 1261
BspANI GGCC 1 cut(s) 1181
BspHI TCATGA 1 cut(s) 544
BspMAI CTGCAG 1 cut(s) 1000
BspMI ACCTGC 1 cut(s) 473
BspPI GGATC 1 cut(s) 605
BspTNI GGTCTC 1 cut(s) 1121
BsrDI GCAATG 1 cut(s) 1262
BsrGI TGTACA 2 cut(s) 506, 579
BssECI CCNNGG 2 cut(s) 659, 1261
BssMI GATC 5 cut(s) 16, 380, 517, 571, 610
BssT1I CCWWGG 2 cut(s) 659, 1261
Bst4CI ACNGT 3 cut(s) 412, 459, 1322
Bst6I CTCTTC 2 cut(s) 881, 1214
BstAPI GCANNNNNTGC 2 cut(s) 278, 320
BstAUI TGTACA 2 cut(s) 506, 579
BstC8I GCNNGC 1 cut(s) 993
BstDEI CTNAG 1 cut(s) 428
BstDSI CCRYGG 1 cut(s) 1261
BstF5I GGATG 3 cut(s) 19, 1066, 1271
BstKTI GATC 5 cut(s) 19, 383, 520, 574, 613
BstMAI GTCTC 1 cut(s) 1121
BstMBI GATC 5 cut(s) 16, 380, 517, 571, 610
BstMWI GCNNNNNNNGC 5 cut(s) 61, 122, 278, 320, 1001
BstNSI RCATGY 3 cut(s) 586, 785, 995
BstSFI CTRYAG 1 cut(s) 996
BstV1I GCAGC 4 cut(s) 82, 293, 889, 982
BstX2I RGATCY 3 cut(s) 380, 571, 610
BstXI CCANNNNNNTGG 1 cut(s) 1268
BstYI RGATCY 3 cut(s) 380, 571, 610
BsuRI GGCC 1 cut(s) 1181
BtgI CCRYGG 1 cut(s) 1261
BtsCI GGATG 3 cut(s) 19, 1066, 1271
BtsI GCAGTG 1 cut(s) 1309
BtsIMutI CAGTG 1 cut(s) 1309
BveI ACCTGC 1 cut(s) 473
Cac8I GCNNGC 1 cut(s) 993
CciI TCATGA 1 cut(s) 544
Csp6I GTAC 6 cut(s) 193, 368, 507, 580, 656, 877
CspCI CAANNNNNGTGG 2 cut(s) 1171, 1206
CviAII CATG 9 cut(s) 20, 545, 563, 583, 774, 782, 992, 1262, 1288
CviQI GTAC 6 cut(s) 193, 368, 507, 580, 656, 877
DdeI CTNAG 1 cut(s) 428
DpnI GATC 5 cut(s) 18, 382, 519, 573, 612
DpnII GATC 5 cut(s) 16, 380, 517, 571, 610
DraIII CACNNNGTG 1 cut(s) 515
Eam1104I CTCTTC 2 cut(s) 881, 1214
EarI CTCTTC 2 cut(s) 881, 1214
Eco130I CCWWGG 2 cut(s) 659, 1261
Eco31I GGTCTC 1 cut(s) 1121
EcoRI GAATTC 1 cut(s) 464
EcoT14I CCWWGG 2 cut(s) 659, 1261
EcoT22I ATGCAT 1 cut(s) 588
ErhI CCWWGG 2 cut(s) 659, 1261
FaeI CATG 9 cut(s) 23, 548, 566, 586, 777, 785, 995, 1265, 1291
FalI AAGNNNNNCTT 4 cut(s) 679, 711, 948, 980
FatI CATG 9 cut(s) 19, 544, 562, 582, 773, 781, 991, 1261, 1287
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 4 cut(s) 96, 282, 903, 996
FokI GGATG 3 cut(s) 26, 1073, 1278
Fsp4HI GCNGC 4 cut(s) 96, 282, 903, 996
FspBI CTAG 3 cut(s) 150, 363, 1035
GluI GCNGC 4 cut(s) 96, 282, 903, 996
HaeIII GGCC 1 cut(s) 1181
Hin1II CATG 9 cut(s) 23, 548, 566, 586, 777, 785, 995, 1265, 1291
HindIII AAGCTT 2 cut(s) 430, 957
HinfI GANTC 8 cut(s) 5, 299, 635, 677, 728, 913, 926, 1243
HphI GGTGA 3 cut(s) 377, 497, 1033
Hpy166II GTNNAC 3 cut(s) 509, 1106, 1271
Hpy188I TCNGA 3 cut(s) 10, 447, 640
Hpy188III TCNNGA 3 cut(s) 545, 687, 883
Hpy8I GTNNAC 3 cut(s) 509, 1106, 1271
HpyAV CCTTC 6 cut(s) 181, 221, 398, 624, 963, 1171
HpyCH4III ACNGT 3 cut(s) 412, 459, 1322
HpyCH4IV ACGT 2 cut(s) 195, 238
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 122, 278, 320, 1001
HpyF3I CTNAG 1 cut(s) 428
HpySE526I ACGT 2 cut(s) 195, 238
Hsp92II CATG 9 cut(s) 23, 548, 566, 586, 777, 785, 995, 1265, 1291
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 5 cut(s) 16, 380, 517, 571, 610
LpnPI CCDG 5 cut(s) 111, 288, 464, 468, 1001
Lsp1109I GCAGC 4 cut(s) 82, 293, 889, 982
LweI GCATC 3 cut(s) 42, 991, 1051
MaeI CTAG 3 cut(s) 150, 363, 1035
MaeII ACGT 2 cut(s) 195, 238
MaeIII GTNAC 2 cut(s) 485, 1283
MalI GATC 5 cut(s) 18, 382, 519, 573, 612
MboI GATC 5 cut(s) 16, 380, 517, 571, 610
MboII GAAGA 3 cut(s) 546, 898, 1231
MfeI CAATTG 1 cut(s) 1005
MflI RGATCY 3 cut(s) 380, 571, 610
MluCI AATT 9 cut(s) 276, 401, 464, 526, 681, 821, 863, 1005, 1299
MlyI GAGTC 6 cut(s) 14, 308, 644, 671, 922, 1252
MnlI CCTC 9 cut(s) 4, 177, 239, 325, 637, 934, 966, 1024, 1215
Mph1103I ATGCAT 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 768
MseI TTAA 9 cut(s) 350, 405, 801, 843, 897, 1080, 1158, 1230, 1317
MslI CAYNNNNRTG 2 cut(s) 150, 1266
MspA1I CMGCKG 1 cut(s) 284
MunI CAATTG 1 cut(s) 1005
Mva1269I GAATGC 1 cut(s) 1058
MwoI GCNNNNNNNGC 5 cut(s) 61, 122, 278, 320, 1001
NcoI CCATGG 1 cut(s) 1261
NdeII GATC 5 cut(s) 16, 380, 517, 571, 610
NlaIII CATG 9 cut(s) 23, 548, 566, 586, 777, 785, 995, 1265, 1291
NmuCI GTSAC 2 cut(s) 485, 1283
NsiI ATGCAT 1 cut(s) 588
NspI RCATGY 3 cut(s) 586, 785, 995
PaeI GCATGC 1 cut(s) 995
PagI TCATGA 1 cut(s) 544
PaqCI CACCTGC 1 cut(s) 473
PctI GAATGC 1 cut(s) 1058
PdmI GAANNNNTTC 1 cut(s) 768
PfeI GAWTC 2 cut(s) 728, 926
PflFI GACNNNGTC 1 cut(s) 912
PkrI GCNGC 4 cut(s) 97, 283, 904, 997
PleI GAGTC 6 cut(s) 13, 307, 643, 671, 921, 1251
PpsI GAGTC 6 cut(s) 13, 307, 643, 671, 921, 1251
PsiI TTATAA 1 cut(s) 204
PstI CTGCAG 1 cut(s) 1000
PsuI RGATCY 3 cut(s) 380, 571, 610
PsyI GACNNNGTC 1 cut(s) 912
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 6 cut(s) 194, 369, 508, 581, 657, 878
RsaNI GTAC 6 cut(s) 193, 368, 507, 580, 656, 877
RseI CAYNNNNRTG 2 cut(s) 150, 1266
SaqAI TTAA 9 cut(s) 350, 405, 801, 843, 897, 1080, 1158, 1230, 1317
SatI GCNGC 4 cut(s) 96, 282, 903, 996
Sau3AI GATC 5 cut(s) 16, 380, 517, 571, 610
SchI GAGTC 6 cut(s) 14, 308, 644, 671, 922, 1252
SfaNI GCATC 3 cut(s) 42, 991, 1051
SfcI CTRYAG 1 cut(s) 996
SmiMI CAYNNNNRTG 2 cut(s) 150, 1266
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
SphI GCATGC 1 cut(s) 995
Sse9I AATT 9 cut(s) 276, 401, 464, 526, 681, 821, 863, 1005, 1299
SspI AATATT 2 cut(s) 499, 1078
SspMI CTAG 3 cut(s) 150, 363, 1035
StyI CCWWGG 2 cut(s) 659, 1261
TaaI ACNGT 3 cut(s) 412, 459, 1322
TaiI ACGT 2 cut(s) 198, 241
TaqI TCGA 2 cut(s) 330, 748
TasI AATT 9 cut(s) 276, 401, 464, 526, 681, 821, 863, 1005, 1299
TatI WGTACW 4 cut(s) 367, 506, 579, 876
TfiI GAWTC 2 cut(s) 728, 926
Tru1I TTAA 9 cut(s) 350, 405, 801, 843, 897, 1080, 1158, 1230, 1317
Tru9I TTAA 9 cut(s) 350, 405, 801, 843, 897, 1080, 1158, 1230, 1317
TscAI CASTG 1 cut(s) 1316
TseFI GTSAC 2 cut(s) 485, 1283
TseI GCWGC 4 cut(s) 95, 281, 902, 995
Tsp45I GTSAC 2 cut(s) 485, 1283
TspDTI ATGAA 4 cut(s) 561, 948, 1113, 1176
TspRI CASTG 1 cut(s) 1316
Tth111I GACNNNGTC 1 cut(s) 912
XapI RAATTY 2 cut(s) 401, 464
XceI RCATGY 3 cut(s) 586, 785, 995
XcmI CCANNNNNNNNNTGG 1 cut(s) 666
XmnI GAANNNNTTC 1 cut(s) 768
XspI CTAG 3 cut(s) 150, 363, 1035
Zsp2I ATGCAT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.