Rmu_sc0000308.1_g000038

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000308.1
OG0000164
Physical Location & Seq
Forward (+)
167950 .. 169582
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000308.1_g000038.1.cds

Sequence Viewer

Length: 1530 bp
atggagtcagaggatgatcaagtttatattcctcaagtaaaagcagagttgatgcctaaattacaccaagagtttgaaacaatagatgaggttgctactttctacaatagatatacaaaagaagcagggttcagtattagaagtcattctagtgcaaccaacaaagataatacccaacttatgaggaaggagtatgtttgttataagcaaggaacttccaaggttcaaggagaaaaatgtaagaaaggattaccacaagtgggttgtaaagcaagaattgcagttgtgagaaaggagtctggaagatatgcaatctctgtatttgtcgaagatcaaaaccacccattaacaagcccacctagaggaaatttgttgagatctcaccatcgtgtttcaaaagttaacacagttctatcacaacaactaagcttggtaaatgttcagaaacataaacagtttgaattctttggtgttcaggtgggtggcattgaaaatattggttgtacacaacgtgatttgtataattatggaagaagttgctgtcaagagaagaaggggcatggtggagatctattgtacatgcattttcagaatgagaaagaaaaagattcttcttctatctatataatggagtcagatgaggaaaacagagtaacacggtgcttttgggctgattcaatttcaagacgagcttacaacttttatggagatgtagttatctttgacactacatacaacacaaatcggtatggaatgatttttgcaccattcactggtgttaataatcatgggcagacaatcatctttgcttctgcattcttaaatgatgagacaactaattcttttgtttggttgttcaaggaatttctgaagggtatgccaggaaatgcccctgaaaatgcccccaaaatgattattactgacaaagatcctgctatgactaaagcgattttagaagcactcccactaacatttcatagatattgcagttggcacattctaaataagttttctgagaagctagatgcaattaaatatcgagattactaccaagacttttatagctgcatatggaattcaagtagtagagaggagtttgactcaagatggactgaaattattgagaaaagtgggttgagtgataacaagtggttgcagtcaatatatgaaattcgttcatcatggataccagcacattttgagaggggacttcttcatcaacgctattatgagttagagaaggatcatatcaatattgatgagaaggcaagaactgtcatgtcactttacattgaagatcatatggccaagatttatgcacgtaagatattttatgaagttcaagaacagttgagagagagcttcaaatataaactagaacttctaagagaaaatgtcactcattgtgtatttaaggttatgcgaaagaaccttgatactatgaagtctcgtgaactgacttatgaaaaagactctgattttgcatcatgcaactgtagaaagtttgagagtgaagggctgtcgtgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

509

Amino Acids

59.63

Weight (kDa)

7.55

Isoelectric Point (pI)

48.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AccB7I CCANNNNNTGG 1 cut(s) 773
AclWI GGATC 2 cut(s) 923, 1251
AcoI YGGCCR 1 cut(s) 1305
AcsI RAATTY 5 cut(s) 367, 461, 863, 1075, 1170
AcuI CTGAAG 1 cut(s) 890
AdeI CACNNNGTG 1 cut(s) 512
AfaI GTAC 2 cut(s) 505, 578
AfiI CCNNNNNNNGG 3 cut(s) 260, 362, 773
AjnI CCWGG 1 cut(s) 880
AleI CACNNNNGTG 1 cut(s) 387
AluBI AGCT 5 cut(s) 429, 692, 1021, 1065, 1362
AluI AGCT 5 cut(s) 429, 692, 1021, 1065, 1362
Alw26I GTCTC 2 cut(s) 824, 1452
AlwI GGATC 2 cut(s) 923, 1251
AoxI GGCC 1 cut(s) 1305
ApeKI GCWGC 1 cut(s) 1065
ApoI RAATTY 5 cut(s) 367, 461, 863, 1075, 1170
ArsI GACNNNNNNTTYG 2 cut(s) 1463, 1495
Asp700I GAANNNNTTC 1 cut(s) 145
AsuHPI GGTGA 1 cut(s) 374
BalI TGGCCA 1 cut(s) 1307
BauI CACGAG 1 cut(s) 1449
BbvI GCAGC 1 cut(s) 1052
BccI CCATC 2 cut(s) 393, 1101
BciT130I CCWGG 1 cut(s) 882
BciVI GTATCC 1 cut(s) 1179
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 824, 1452
BfaI CTAG 4 cut(s) 150, 360, 1022, 1376
BfmI CTRYAG 1 cut(s) 1495
BfuI GTATCC 1 cut(s) 1179
BglII AGATCT 2 cut(s) 377, 568
BisI GCNGC 1 cut(s) 1066
BlsI GCNGC 1 cut(s) 1067
Bme1390I CCNGG 1 cut(s) 882
BmrFI CCNGG 1 cut(s) 882
BmsI GCATC 3 cut(s) 42, 1015, 1493
BplI GAGNNNNNCTC 2 cut(s) 1085, 1117
BpuEI CTTGAG 2 cut(s) 18, 1087
BsaAI YACGTR 1 cut(s) 1322
BsaJI CCNNGG 1 cut(s) 219
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 362, 773
Bse1I ACTGG 1 cut(s) 778
BseBI CCWGG 1 cut(s) 882
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 3 cut(s) 260, 362, 773
BseMII CTCAG 1 cut(s) 1005
BseNI ACTGG 1 cut(s) 778
BseRI GAGGAG 1 cut(s) 1106
BseXI GCAGC 1 cut(s) 1052
BshFI GGCC 1 cut(s) 1307
BslFI GGGAC 1 cut(s) 1221
BslI CCNNNNNNNGG 3 cut(s) 260, 362, 773
BsmAI GTCTC 2 cut(s) 824, 1452
BsmFI GGGAC 1 cut(s) 1221
BsmI GAATGC 1 cut(s) 815
BsnI GGCC 1 cut(s) 1307
Bsp1407I TGTACA 2 cut(s) 503, 576
Bsp143I GATC 7 cut(s) 16, 331, 377, 568, 928, 1243, 1297
BspANI GGCC 1 cut(s) 1307
BspCNI CTCAG 1 cut(s) 1006
BspPI GGATC 2 cut(s) 923, 1251
BsrGI TGTACA 2 cut(s) 503, 576
BsrI ACTGG 1 cut(s) 778
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 7 cut(s) 16, 331, 377, 568, 928, 1243, 1297
BssSI CACGAG 1 cut(s) 1449
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 1449
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 6 cut(s) 409, 456, 660, 1276, 1350, 1496
BstAPI GCANNNNNTGC 1 cut(s) 278
BstAUI TGTACA 2 cut(s) 503, 576
BstBAI YACGTR 1 cut(s) 1322
BstDEI CTNAG 3 cut(s) 425, 1014, 1385
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 7 cut(s) 19, 334, 380, 571, 931, 1246, 1300
BstMAI GTCTC 2 cut(s) 824, 1452
BstMBI GATC 7 cut(s) 16, 331, 377, 568, 928, 1243, 1297
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 1 cut(s) 882
BstNSI RCATGY 1 cut(s) 583
BstSCI CCNGG 1 cut(s) 880
BstSFI CTRYAG 1 cut(s) 1495
BstV1I GCAGC 1 cut(s) 1052
BstX2I RGATCY 3 cut(s) 377, 568, 928
BstYI RGATCY 3 cut(s) 377, 568, 928
BsuI GTATCC 1 cut(s) 1179
BsuRI GGCC 1 cut(s) 1307
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 771
Csp6I GTAC 2 cut(s) 504, 577
CviAII CATG 6 cut(s) 560, 580, 788, 1182, 1279, 1488
CviJI RGCY 9 cut(s) 354, 429, 671, 692, 1021, 1065, 1307, 1362, 1519
CviKI_1 RGCY 9 cut(s) 354, 429, 671, 692, 1021, 1065, 1307, 1362, 1519
CviQI GTAC 2 cut(s) 504, 577
DdeI CTNAG 3 cut(s) 425, 1014, 1385
DpnI GATC 7 cut(s) 18, 333, 379, 570, 930, 1245, 1299
DpnII GATC 7 cut(s) 16, 331, 377, 568, 928, 1243, 1297
DraIII CACNNNGTG 1 cut(s) 512
EaeI YGGCCR 1 cut(s) 1305
Eco130I CCWWGG 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 890
EcoRI GAATTC 2 cut(s) 461, 1075
EcoRII CCWGG 1 cut(s) 880
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 585
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 6 cut(s) 563, 583, 791, 1185, 1282, 1491
FalI AAGNNNNNCTT 2 cut(s) 676, 708
FaqI GGGAC 1 cut(s) 1221
FatI CATG 6 cut(s) 559, 579, 787, 1181, 1278, 1487
FauNDI CATATG 2 cut(s) 1070, 1302
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 1066
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 1066
FspBI CTAG 4 cut(s) 150, 360, 1022, 1376
GluI GCNGC 1 cut(s) 1066
HaeIII GGCC 1 cut(s) 1307
Hin1II CATG 6 cut(s) 563, 583, 791, 1185, 1282, 1491
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 427
HinfI GANTC 7 cut(s) 5, 296, 608, 632, 674, 1100, 1472
HpaI GTTAAC 1 cut(s) 403
HphI GGTGA 1 cut(s) 374
Hpy166II GTNNAC 3 cut(s) 403, 506, 1454
Hpy188I TCNGA 7 cut(s) 10, 444, 591, 637, 870, 1015, 1477
Hpy188III TCNNGA 7 cut(s) 300, 545, 684, 1040, 1104, 1343, 1451
Hpy8I GTNNAC 3 cut(s) 403, 506, 1454
HpyAV CCTTC 6 cut(s) 181, 547, 865, 1234, 1258, 1508
HpyCH4III ACNGT 6 cut(s) 409, 456, 660, 1276, 1350, 1496
HpyCH4IV ACGT 2 cut(s) 511, 1321
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 3 cut(s) 425, 1014, 1385
HpySE526I ACGT 2 cut(s) 511, 1321
Hsp92II CATG 6 cut(s) 563, 583, 791, 1185, 1282, 1491
Ksp22I TGATCA 1 cut(s) 16
KspAI GTTAAC 1 cut(s) 403
Kzo9I GATC 7 cut(s) 16, 331, 377, 568, 928, 1243, 1297
LpnPI CCDG 9 cut(s) 111, 285, 461, 759, 867, 894, 906, 945, 1203
Lsp1109I GCAGC 1 cut(s) 1052
LweI GCATC 3 cut(s) 42, 1015, 1493
MaeI CTAG 4 cut(s) 150, 360, 1022, 1376
MaeII ACGT 2 cut(s) 511, 1321
MaeIII GTNAC 3 cut(s) 652, 1281, 1396
MalI GATC 7 cut(s) 18, 333, 379, 570, 930, 1245, 1299
MboI GATC 7 cut(s) 16, 331, 377, 568, 928, 1243, 1297
MboII GAAGA 8 cut(s) 315, 341, 543, 562, 603, 606, 1205, 1307
MflI RGATCY 3 cut(s) 377, 568, 928
MlsI TGGCCA 1 cut(s) 1307
MluNI TGGCCA 1 cut(s) 1307
MlyI GAGTC 5 cut(s) 14, 305, 641, 1094, 1466
MnlI CCTC 8 cut(s) 4, 42, 82, 177, 356, 634, 1084, 1197
Mox20I TGGCCA 1 cut(s) 1307
Mph1103I ATGCAT 1 cut(s) 585
MroXI GAANNNNTTC 1 cut(s) 145
MscI TGGCCA 1 cut(s) 1307
MseI TTAA 6 cut(s) 347, 402, 780, 821, 1032, 1413
MslI CAYNNNNRTG 2 cut(s) 150, 387
Msp20I TGGCCA 1 cut(s) 1307
MspR9I CCNGG 1 cut(s) 882
Mva1269I GAATGC 1 cut(s) 815
MvaI CCWGG 1 cut(s) 882
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeI CATATG 2 cut(s) 1070, 1302
NdeII GATC 7 cut(s) 16, 331, 377, 568, 928, 1243, 1297
NlaIII CATG 6 cut(s) 563, 583, 791, 1185, 1282, 1491
NmuCI GTSAC 2 cut(s) 1281, 1396
NsiI ATGCAT 1 cut(s) 585
NspI RCATGY 1 cut(s) 583
OliI CACNNNNGTG 1 cut(s) 387
PctI GAATGC 1 cut(s) 815
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 2 cut(s) 608, 674
PflMI CCANNNNNTGG 1 cut(s) 773
PkrI GCNGC 1 cut(s) 1067
PleI GAGTC 5 cut(s) 13, 304, 640, 1094, 1466
PpsI GAGTC 5 cut(s) 13, 304, 640, 1094, 1466
Ppu21I YACGTR 1 cut(s) 1322
PsiI TTATAA 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 880
PspGI CCWGG 1 cut(s) 880
PsuI RGATCY 3 cut(s) 377, 568, 928
RsaI GTAC 2 cut(s) 505, 578
RsaNI GTAC 2 cut(s) 504, 577
RseI CAYNNNNRTG 2 cut(s) 150, 387
SaqAI TTAA 6 cut(s) 347, 402, 780, 821, 1032, 1413
SatI GCNGC 1 cut(s) 1066
Sau3AI GATC 7 cut(s) 16, 331, 377, 568, 928, 1243, 1297
SchI GAGTC 5 cut(s) 14, 305, 641, 1094, 1466
ScrFI CCNGG 1 cut(s) 882
SfaNI GCATC 3 cut(s) 42, 1015, 1493
SfcI CTRYAG 1 cut(s) 1495
SmiMI CAYNNNNRTG 2 cut(s) 150, 387
SmlI CTYRAG 2 cut(s) 33, 1102
SmoI CTYRAG 2 cut(s) 33, 1102
SspI AATATT 2 cut(s) 496, 1255
SspMI CTAG 4 cut(s) 150, 360, 1022, 1376
StyD4I CCNGG 1 cut(s) 880
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 6 cut(s) 409, 456, 660, 1276, 1350, 1496
TaiI ACGT 2 cut(s) 514, 1324
TaqI TCGA 2 cut(s) 327, 1039
TatI WGTACW 2 cut(s) 503, 576
TfiI GAWTC 2 cut(s) 608, 674
Tru1I TTAA 6 cut(s) 347, 402, 780, 821, 1032, 1413
Tru9I TTAA 6 cut(s) 347, 402, 780, 821, 1032, 1413
TscAI CASTG 1 cut(s) 778
TseFI GTSAC 2 cut(s) 1281, 1396
TseI GCWGC 1 cut(s) 1065
Tsp45I GTSAC 2 cut(s) 1281, 1396
TspDTI ATGAA 7 cut(s) 965, 1167, 1182, 1205, 1350, 1457, 1479
TspRI CASTG 1 cut(s) 778
Van91I CCANNNNNTGG 1 cut(s) 773
XapI RAATTY 5 cut(s) 367, 461, 863, 1075, 1170
XceI RCATGY 1 cut(s) 583
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 4 cut(s) 150, 360, 1022, 1376
Zsp2I ATGCAT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.