Rmu_sc0016175.1_g000001

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016175.1
OG0000164
Physical Location & Seq
Forward (+)
505 .. 2240
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016175.1_g000001.1.cds

Sequence Viewer

Length: 1257 bp
atggagtcagaggatgatcaagtttatattcctcaagtaaaggctgagttgatgcctaaattataccaagagtttgaaacaatagatgatgttgctgctttctacaatagatatgcaaaagaagcaggctttagtattagaagtcattctagtgcgactagcaaagataagaaacaacttatgaggaaggagtatgtctgttataagcaaggagattccaaagttgaaggagaaaaacgtaagagaggattaccaaaagtgggttgtaaagcgagaattgcagttgtgagaaagaaggagtctggaagatatgcaatttctgtatttgtcgagggtcacaaccatccattaacaagcccgcctagagtacatttgttgagatctcaccgtcgcaggtggcattcaaaatattggttttatatagctgatctatataattatggaagaacttgtcgtgaagagaagaaggggcatgatggagatctactgtacatgcattttcagaatgagaaagaaaaagattcctcttttgtctatacaatggagtcagatgaggaaaacagatttaagaggggacttcttcaccaacgccattctgagttagaggaggatcatattaatattgatgagaaggcaaaaactgtcatgtcccttgacatagaagatcatatggccaaggtttatacacgtaaactattttatgaagttcaagaacactgtagaaagtttgacagtgaagggctcccatgtcggcatgttttggcatatttgattaagatccaagatgttgataaattgcctattcagtacatcttgaagagatggactaaagctgcaagacaaagagttgtaatagattctgatggaacggagataaaagataacaaagctttacttgcaaggaggactaaactattcgagcatgctaaatatgcaattgataaggttatggtgagtgatgaggcttcacaactctttatggaagcattgcatgcttttttggagaatattaaaccattaattagtaatgaaagtggaaaaagtgcagtaggtttggagacaaagaatgatcctattcagcatgtttttaatgaaccagatcaagtgagagcaaaagggtgtgggagaaggttgaagaaaggaaaagagaagaagaaagttaaggtaaaggacagtcaaggtaggcaatgccatggatgtggactatttggtcagtcacatgacaaaagaaattgtccaacacttcatggaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

418

Amino Acids

48.79

Weight (kDa)

9.3

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AarI CACCTGC 1 cut(s) 384
AasI GACNNNNNNGTC 1 cut(s) 1209
Acc36I ACCTGC 1 cut(s) 384
AciI CCGC 1 cut(s) 359
AclWI GGATC 3 cut(s) 618, 772, 1064
AcoI YGGCCR 1 cut(s) 672
AfaI GTAC 3 cut(s) 369, 491, 809
AfiI CCNNNNNNNGG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 686
AgsI TTSAA 6 cut(s) 77, 227, 405, 710, 817, 1135
AluBI AGCT 3 cut(s) 425, 833, 890
AluI AGCT 3 cut(s) 425, 833, 890
Alw26I GTCTC 1 cut(s) 1052
AlwI GGATC 3 cut(s) 618, 772, 1064
AoxI GGCC 1 cut(s) 672
ApeKI GCWGC 2 cut(s) 95, 833
AseI ATTAAT 2 cut(s) 618, 1019
Asp700I GAANNNNTTC 1 cut(s) 145
AsuHPI GGTGA 3 cut(s) 377, 575, 964
BalI TGGCCA 1 cut(s) 674
BanII GRGCYC 1 cut(s) 744
BbvI GCAGC 2 cut(s) 82, 820
BccI CCATC 4 cut(s) 351, 470, 816, 857
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 1052
BfaI CTAG 3 cut(s) 150, 159, 363
BfmI CTRYAG 1 cut(s) 718
BfuAI ACCTGC 1 cut(s) 384
BglII AGATCT 2 cut(s) 380, 481
BisI GCNGC 2 cut(s) 96, 834
BlsI GCNGC 2 cut(s) 97, 835
BmiI GGNNCC 1 cut(s) 743
BmsI GCATC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 689
BsaBI GATNNNNATC 2 cut(s) 480, 776
BsaJI CCNNGG 2 cut(s) 675, 1192
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse3DI GCAATG 2 cut(s) 986, 1193
Bse8I GATNNNNATC 2 cut(s) 480, 776
BseDI CCNNGG 2 cut(s) 675, 1192
BseGI GGATG 3 cut(s) 19, 343, 1202
BseJI GATNNNNATC 2 cut(s) 480, 776
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 2 cut(s) 986, 1193
BseMII CTCAG 2 cut(s) 36, 588
BseRI GAGGAG 1 cut(s) 620
BseXI GCAGC 2 cut(s) 82, 820
BsgI GTGCAG 1 cut(s) 1065
BshFI GGCC 1 cut(s) 674
BslFI GGGAC 2 cut(s) 588, 634
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 1052
BsmFI GGGAC 2 cut(s) 588, 634
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 1 cut(s) 674
Bsp1286I GDGCHC 1 cut(s) 744
Bsp1407I TGTACA 1 cut(s) 489
Bsp143I GATC 9 cut(s) 16, 380, 427, 481, 610, 664, 777, 1069, 1099
Bsp19I CCATGG 1 cut(s) 1192
BspACI CCGC 1 cut(s) 359
BspANI GGCC 1 cut(s) 674
BspCNI CTCAG 2 cut(s) 37, 589
BspLI GGNNCC 1 cut(s) 743
BspMI ACCTGC 1 cut(s) 384
BspPI GGATC 3 cut(s) 618, 772, 1064
BsrDI GCAATG 2 cut(s) 986, 1193
BsrGI TGTACA 1 cut(s) 489
BssECI CCNNGG 2 cut(s) 675, 1192
BssMI GATC 9 cut(s) 16, 380, 427, 481, 610, 664, 777, 1069, 1099
BssT1I CCWWGG 2 cut(s) 675, 1192
Bst4CI ACNGT 6 cut(s) 389, 489, 643, 719, 734, 1175
Bst6I CTCTTC 2 cut(s) 453, 812
BstAPI GCANNNNNTGC 1 cut(s) 992
BstAUI TGTACA 1 cut(s) 489
BstBAI YACGTR 1 cut(s) 689
BstC8I GCNNGC 4 cut(s) 127, 359, 924, 993
BstDEI CTNAG 2 cut(s) 45, 597
BstDSI CCRYGG 1 cut(s) 1192
BstF5I GGATG 3 cut(s) 19, 343, 1202
BstKTI GATC 9 cut(s) 19, 383, 430, 484, 613, 667, 780, 1072, 1102
BstMAI GTCTC 1 cut(s) 1052
BstMBI GATC 9 cut(s) 16, 380, 427, 481, 610, 664, 777, 1069, 1099
BstMWI GCNNNNNNNGC 5 cut(s) 122, 278, 896, 932, 992
BstNSI RCATGY 5 cut(s) 496, 758, 926, 995, 1085
BstSFI CTRYAG 1 cut(s) 718
BstV1I GCAGC 2 cut(s) 82, 820
BstX2I RGATCY 3 cut(s) 380, 481, 777
BstXI CCANNNNNNTGG 1 cut(s) 1199
BstYI RGATCY 3 cut(s) 380, 481, 777
BsuRI GGCC 1 cut(s) 674
BtgI CCRYGG 1 cut(s) 1192
BtsCI GGATG 3 cut(s) 19, 343, 1202
BtsIMutI CAGTG 2 cut(s) 715, 739
BveI ACCTGC 1 cut(s) 384
Cac8I GCNNGC 4 cut(s) 127, 359, 924, 993
Csp6I GTAC 3 cut(s) 368, 490, 808
CviJI RGCY 9 cut(s) 44, 129, 357, 425, 674, 742, 833, 890, 965
CviKI_1 RGCY 9 cut(s) 44, 129, 357, 425, 674, 742, 833, 890, 965
CviQI GTAC 3 cut(s) 368, 490, 808
DdeI CTNAG 2 cut(s) 45, 597
DpnI GATC 9 cut(s) 18, 382, 429, 483, 612, 666, 779, 1071, 1101
DpnII GATC 9 cut(s) 16, 380, 427, 481, 610, 664, 777, 1069, 1099
DrdI GACNNNNNNGTC 1 cut(s) 1209
DseDI GACNNNNNNGTC 1 cut(s) 1209
EaeI YGGCCR 1 cut(s) 672
Eam1104I CTCTTC 2 cut(s) 453, 812
EarI CTCTTC 2 cut(s) 453, 812
Eco130I CCWWGG 2 cut(s) 675, 1192
Eco24I GRGCYC 1 cut(s) 744
EcoT14I CCWWGG 2 cut(s) 675, 1192
EcoT22I ATGCAT 1 cut(s) 498
EcoT38I GRGCYC 1 cut(s) 744
ErhI CCWWGG 2 cut(s) 675, 1192
FalI AAGNNNNNCTT 2 cut(s) 879, 911
FaqI GGGAC 2 cut(s) 588, 634
FauI CCCGC 1 cut(s) 366
FauNDI CATATG 1 cut(s) 669
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 2 cut(s) 96, 834
FokI GGATG 3 cut(s) 26, 330, 1209
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 2 cut(s) 96, 834
FspBI CTAG 3 cut(s) 150, 159, 363
GluI GCNGC 2 cut(s) 96, 834
HaeIII GGCC 1 cut(s) 674
HindIII AAGCTT 1 cut(s) 888
HinfI GANTC 6 cut(s) 5, 215, 299, 521, 545, 857
HphI GGTGA 3 cut(s) 377, 575, 964
Hpy166II GTNNAC 2 cut(s) 692, 1202
Hpy188I TCNGA 5 cut(s) 10, 504, 550, 598, 862
Hpy188III TCNNGA 4 cut(s) 303, 455, 710, 814
Hpy8I GTNNAC 2 cut(s) 692, 1202
Hpy99I CGWCG 1 cut(s) 393
HpyAV CCTTC 8 cut(s) 181, 221, 289, 460, 625, 731, 1122, 1245
HpyCH4III ACNGT 6 cut(s) 389, 489, 643, 719, 734, 1175
HpyCH4IV ACGT 2 cut(s) 238, 688
HpyCH4V TGCA 9 cut(s) 116, 281, 314, 496, 836, 899, 935, 991, 1046
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 278, 896, 932, 992
HpyF3I CTNAG 2 cut(s) 45, 597
HpySE526I ACGT 2 cut(s) 238, 688
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 9 cut(s) 16, 380, 427, 481, 610, 664, 777, 1069, 1099
LmnI GCTCC 1 cut(s) 747
LpnPI CCDG 4 cut(s) 111, 288, 379, 1110
Lsp1109I GCAGC 2 cut(s) 82, 820
LweI GCATC 1 cut(s) 42
MaeI CTAG 3 cut(s) 150, 159, 363
MaeII ACGT 2 cut(s) 238, 688
MaeIII GTNAC 2 cut(s) 335, 1215
MalI GATC 9 cut(s) 18, 382, 429, 483, 612, 666, 779, 1071, 1101
MboI GATC 9 cut(s) 16, 380, 427, 481, 610, 664, 777, 1069, 1099
MfeI CAATTG 1 cut(s) 936
MflI RGATCY 3 cut(s) 380, 481, 777
MhlI GDGCHC 1 cut(s) 744
MlsI TGGCCA 1 cut(s) 674
MluCI AATT 8 cut(s) 59, 276, 315, 436, 794, 936, 1020, 1231
MluNI TGGCCA 1 cut(s) 674
MlyI GAGTC 3 cut(s) 14, 308, 554
Mox20I TGGCCA 1 cut(s) 674
Mph1103I ATGCAT 1 cut(s) 498
MroXI GAANNNNTTC 1 cut(s) 145
MscI TGGCCA 1 cut(s) 674
MseI TTAA 8 cut(s) 350, 567, 618, 774, 1011, 1019, 1089, 1161
MslI CAYNNNNRTG 2 cut(s) 150, 1197
Msp20I TGGCCA 1 cut(s) 674
MunI CAATTG 1 cut(s) 936
Mva1269I GAATGC 1 cut(s) 400
MwoI GCNNNNNNNGC 5 cut(s) 122, 278, 896, 932, 992
NcoI CCATGG 1 cut(s) 1192
NdeI CATATG 1 cut(s) 669
NdeII GATC 9 cut(s) 16, 380, 427, 481, 610, 664, 777, 1069, 1099
NlaIV GGNNCC 1 cut(s) 743
NmuCI GTSAC 2 cut(s) 335, 1215
NsiI ATGCAT 1 cut(s) 498
NspI RCATGY 5 cut(s) 496, 758, 926, 995, 1085
PaeI GCATGC 2 cut(s) 926, 995
PaqCI CACCTGC 1 cut(s) 384
PctI GAATGC 1 cut(s) 400
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 3 cut(s) 215, 521, 857
PkrI GCNGC 2 cut(s) 97, 835
PleI GAGTC 3 cut(s) 13, 307, 553
PpsI GAGTC 3 cut(s) 13, 307, 553
Ppu21I YACGTR 1 cut(s) 689
PshBI ATTAAT 2 cut(s) 618, 1019
PsiI TTATAA 1 cut(s) 204
PspN4I GGNNCC 1 cut(s) 743
PsuI RGATCY 3 cut(s) 380, 481, 777
RsaI GTAC 3 cut(s) 369, 491, 809
RsaNI GTAC 3 cut(s) 368, 490, 808
RseI CAYNNNNRTG 2 cut(s) 150, 1197
SaqAI TTAA 8 cut(s) 350, 567, 618, 774, 1011, 1019, 1089, 1161
SatI GCNGC 2 cut(s) 96, 834
Sau3AI GATC 9 cut(s) 16, 380, 427, 481, 610, 664, 777, 1069, 1099
SchI GAGTC 3 cut(s) 14, 308, 554
SduI GDGCHC 1 cut(s) 744
SfaNI GCATC 1 cut(s) 42
SfcI CTRYAG 1 cut(s) 718
SmiMI CAYNNNNRTG 2 cut(s) 150, 1197
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
SphI GCATGC 2 cut(s) 926, 995
Sse9I AATT 8 cut(s) 59, 276, 315, 436, 794, 936, 1020, 1231
SsiI CCGC 1 cut(s) 359
SspI AATATT 3 cut(s) 410, 622, 1009
SspMI CTAG 3 cut(s) 150, 159, 363
StyI CCWWGG 2 cut(s) 675, 1192
TaaI ACNGT 6 cut(s) 389, 489, 643, 719, 734, 1175
TaiI ACGT 2 cut(s) 241, 691
TaqI TCGA 2 cut(s) 330, 918
TasI AATT 8 cut(s) 59, 276, 315, 436, 794, 936, 1020, 1231
TatI WGTACW 3 cut(s) 367, 489, 807
TfiI GAWTC 3 cut(s) 215, 521, 857
Tru1I TTAA 8 cut(s) 350, 567, 618, 774, 1011, 1019, 1089, 1161
Tru9I TTAA 8 cut(s) 350, 567, 618, 774, 1011, 1019, 1089, 1161
TscAI CASTG 2 cut(s) 722, 739
TseFI GTSAC 2 cut(s) 335, 1215
TseI GCWGC 2 cut(s) 95, 833
Tsp45I GTSAC 2 cut(s) 335, 1215
TspDTI ATGAA 4 cut(s) 717, 1044, 1107, 1235
TspGWI ACGGA 1 cut(s) 884
TspRI CASTG 2 cut(s) 722, 739
VspI ATTAAT 2 cut(s) 618, 1019
XceI RCATGY 5 cut(s) 496, 758, 926, 995, 1085
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 3 cut(s) 150, 159, 363
Zsp2I ATGCAT 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.