Rmu_sc0017323.1_g000010

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017323.1
OG0000164
Physical Location & Seq
Forward (+)
37198 .. 38132
935 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017323.1_g000010.1.cds

Sequence Viewer

Length: 699 bp
atgccaggagatgcacaagaaaatgcccccaagatgattattacctaccaagatcctgctatgactaaagccattgcagaagcactcccacaaacatttcatagatattgtagttggcacattcttaataaattttctgagaagctagatgcaattaaatatcgggattcctaccaagactttcatagctgcatatggaattcaagtagtagagaggagtttgactcaagatggattgaaattgttgagaagagtgggttgagtgataacaagtggctggagtcgatatacgaaatttgttcatcatggataccatttaagaggggacttctccaccaatgccattctgagttagaggaggatcatattaatattgatgagaaggcaaaaactgtcatgtcccttgacatggaagatcatatggccaagaacattgatacttgcaagtctcgtgaactcacttacgaaaagaattctgattttgcatcatgcagctgtagaaagtttgacagtgaagggttcccatttcggcatgttttggcatatttgattaagatccaagatgttgataaattgcctattcagtacatcttgaagagatggactaaagctgtaagacagagagttgtgatagattctgatggaatcgagataaaagataataaagctttacttgcaaggaggactaaactattctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

232

Amino Acids

27.28

Weight (kDa)

6.26

Isoelectric Point (pI)

71.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 47, 369, 550
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 4 cut(s) 131, 199, 294, 472
AfaI GTAC 1 cut(s) 587
AfiI CCNNNNNNNGG 1 cut(s) 409
AgsI TTSAA 3 cut(s) 204, 239, 595
AjnI CCWGG 1 cut(s) 4
AluBI AGCT 5 cut(s) 145, 189, 495, 611, 668
AluI AGCT 5 cut(s) 145, 189, 495, 611, 668
Alw26I GTCTC 1 cut(s) 453
AlwI GGATC 3 cut(s) 47, 369, 550
AoxI GGCC 1 cut(s) 423
ApeKI GCWGC 2 cut(s) 189, 492
ApoI RAATTY 4 cut(s) 131, 199, 294, 472
AseI ATTAAT 1 cut(s) 369
BalI TGGCCA 1 cut(s) 425
BauI CACGAG 1 cut(s) 450
BbvI GCAGC 2 cut(s) 176, 504
BccI CCATC 3 cut(s) 225, 594, 635
BciT130I CCWGG 1 cut(s) 6
BciVI GTATCC 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 453
BfaI CTAG 2 cut(s) 146, 697
BfmI CTRYAG 1 cut(s) 496
BfuI GTATCC 1 cut(s) 303
BisI GCNGC 2 cut(s) 190, 493
BlsI GCNGC 2 cut(s) 191, 494
Bme1390I CCNGG 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 521
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 2 cut(s) 139, 494
BplI GAGNNNNNCTC 2 cut(s) 209, 241
BpmI CTGGAG 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 211
BsaBI GATNNNNATC 1 cut(s) 554
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse3DI GCAATG 1 cut(s) 72
Bse8I GATNNNNATC 1 cut(s) 554
BseBI CCWGG 1 cut(s) 6
BseJI GATNNNNATC 1 cut(s) 554
BseLI CCNNNNNNNGG 1 cut(s) 409
BseMI GCAATG 1 cut(s) 72
BseMII CTCAG 2 cut(s) 129, 339
BseRI GAGGAG 2 cut(s) 230, 371
BseXI GCAGC 2 cut(s) 176, 504
BshFI GGCC 1 cut(s) 425
BslFI GGGAC 2 cut(s) 339, 385
BslI CCNNNNNNNGG 1 cut(s) 409
BsmAI GTCTC 1 cut(s) 453
BsmFI GGGAC 2 cut(s) 339, 385
BsnI GGCC 1 cut(s) 425
Bsp143I GATC 4 cut(s) 52, 361, 415, 555
BspANI GGCC 1 cut(s) 425
BspCNI CTCAG 2 cut(s) 130, 340
BspLI GGNNCC 1 cut(s) 521
BspPI GGATC 3 cut(s) 47, 369, 550
BsrDI GCAATG 1 cut(s) 72
BssMI GATC 4 cut(s) 52, 361, 415, 555
BssSI CACGAG 1 cut(s) 450
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 1 cut(s) 6
Bst4CI ACNGT 2 cut(s) 394, 512
Bst6I CTCTTC 2 cut(s) 245, 590
BstDEI CTNAG 2 cut(s) 138, 348
BstKTI GATC 4 cut(s) 55, 364, 418, 558
BstMAI GTCTC 1 cut(s) 453
BstMBI GATC 4 cut(s) 52, 361, 415, 555
BstMWI GCNNNNNNNGC 1 cut(s) 674
BstNI CCWGG 1 cut(s) 6
BstNSI RCATGY 1 cut(s) 536
BstSCI CCNGG 1 cut(s) 4
BstSFI CTRYAG 1 cut(s) 496
BstV1I GCAGC 2 cut(s) 176, 504
BstX2I RGATCY 2 cut(s) 52, 555
BstYI RGATCY 2 cut(s) 52, 555
BsuI GTATCC 1 cut(s) 303
BsuRI GGCC 1 cut(s) 425
BtsIMutI CAGTG 1 cut(s) 517
Csp6I GTAC 1 cut(s) 586
CviAII CATG 5 cut(s) 306, 397, 409, 489, 533
CviJI RGCY 8 cut(s) 71, 145, 189, 277, 425, 495, 611, 668
CviKI_1 RGCY 8 cut(s) 71, 145, 189, 277, 425, 495, 611, 668
CviQI GTAC 1 cut(s) 586
DdeI CTNAG 2 cut(s) 138, 348
DpnI GATC 4 cut(s) 54, 363, 417, 557
DpnII GATC 4 cut(s) 52, 361, 415, 555
EaeI YGGCCR 1 cut(s) 423
Eam1104I CTCTTC 2 cut(s) 245, 590
EarI CTCTTC 2 cut(s) 245, 590
EcoRI GAATTC 2 cut(s) 199, 472
EcoRII CCWGG 1 cut(s) 4
FaeI CATG 5 cut(s) 309, 400, 412, 492, 536
FalI AAGNNNNNCTT 2 cut(s) 657, 689
FaqI GGGAC 2 cut(s) 339, 385
FatI CATG 5 cut(s) 305, 396, 408, 488, 532
FauNDI CATATG 2 cut(s) 194, 420
Fnu4HI GCNGC 2 cut(s) 190, 493
Fsp4HI GCNGC 2 cut(s) 190, 493
FspBI CTAG 2 cut(s) 146, 697
GluI GCNGC 2 cut(s) 190, 493
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 1 cut(s) 425
Hin1II CATG 5 cut(s) 309, 400, 412, 492, 536
HindIII AAGCTT 1 cut(s) 666
HinfI GANTC 5 cut(s) 167, 224, 281, 635, 645
Hpy166II GTNNAC 1 cut(s) 455
Hpy188I TCNGA 4 cut(s) 139, 349, 478, 640
Hpy188III TCNNGA 5 cut(s) 164, 228, 452, 592, 649
Hpy8I GTNNAC 1 cut(s) 455
HpyAV CCTTC 2 cut(s) 376, 509
HpyCH4III ACNGT 2 cut(s) 394, 512
HpyCH4V TGCA 8 cut(s) 14, 77, 152, 192, 444, 485, 492, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 674
HpyF3I CTNAG 2 cut(s) 138, 348
Hsp92II CATG 5 cut(s) 309, 400, 412, 492, 536
Kzo9I GATC 4 cut(s) 52, 361, 415, 555
LpnPI CCDG 3 cut(s) 18, 69, 263
Lsp1109I GCAGC 2 cut(s) 176, 504
LweI GCATC 2 cut(s) 139, 494
MaeI CTAG 2 cut(s) 146, 697
MalI GATC 4 cut(s) 54, 363, 417, 557
MboI GATC 4 cut(s) 52, 361, 415, 555
MboII GAAGA 3 cut(s) 262, 425, 607
MflI RGATCY 2 cut(s) 52, 555
MlsI TGGCCA 1 cut(s) 425
MluCI AATT 7 cut(s) 131, 153, 199, 240, 294, 472, 572
MluNI TGGCCA 1 cut(s) 425
MlyI GAGTC 2 cut(s) 218, 290
MnlI CCTC 5 cut(s) 208, 315, 349, 352, 675
Mox20I TGGCCA 1 cut(s) 425
MscI TGGCCA 1 cut(s) 425
MseI TTAA 5 cut(s) 126, 156, 318, 369, 552
Msp20I TGGCCA 1 cut(s) 425
MspA1I CMGCKG 1 cut(s) 495
MspR9I CCNGG 1 cut(s) 6
MvaI CCWGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 674
NdeI CATATG 2 cut(s) 194, 420
NdeII GATC 4 cut(s) 52, 361, 415, 555
NlaIII CATG 5 cut(s) 309, 400, 412, 492, 536
NlaIV GGNNCC 1 cut(s) 521
NspI RCATGY 1 cut(s) 536
PfeI GAWTC 3 cut(s) 167, 635, 645
PkrI GCNGC 2 cut(s) 191, 494
PleI GAGTC 2 cut(s) 218, 289
PpsI GAGTC 2 cut(s) 218, 289
PshBI ATTAAT 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 4
PspGI CCWGG 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 521
PsuI RGATCY 2 cut(s) 52, 555
PvuII CAGCTG 1 cut(s) 495
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
SaqAI TTAA 5 cut(s) 126, 156, 318, 369, 552
SatI GCNGC 2 cut(s) 190, 493
Sau3AI GATC 4 cut(s) 52, 361, 415, 555
SchI GAGTC 2 cut(s) 218, 290
ScrFI CCNGG 1 cut(s) 6
SetI ASST 6 cut(s) 47, 147, 191, 497, 613, 670
SfaNI GCATC 2 cut(s) 139, 494
SfcI CTRYAG 1 cut(s) 496
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 7 cut(s) 131, 153, 199, 240, 294, 472, 572
SspI AATATT 1 cut(s) 373
SspMI CTAG 2 cut(s) 146, 697
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 2 cut(s) 394, 512
TaqI TCGA 2 cut(s) 284, 648
TasI AATT 7 cut(s) 131, 153, 199, 240, 294, 472, 572
TatI WGTACW 1 cut(s) 585
TfiI GAWTC 3 cut(s) 167, 635, 645
Tru1I TTAA 5 cut(s) 126, 156, 318, 369, 552
Tru9I TTAA 5 cut(s) 126, 156, 318, 369, 552
TscAI CASTG 1 cut(s) 517
TseI GCWGC 2 cut(s) 189, 492
TspDTI ATGAA 3 cut(s) 89, 173, 291
TspRI CASTG 1 cut(s) 517
VspI ATTAAT 1 cut(s) 369
XapI RAATTY 4 cut(s) 131, 199, 294, 472
XceI RCATGY 1 cut(s) 536
XspI CTAG 2 cut(s) 146, 697
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.