Rmu_sc0002478.1_g000014

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002478.1
OG0000164
Physical Location & Seq
Reverse (-)
112698 .. 116485
3788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002478.1_g000014.1.cds

Sequence Viewer

Length: 1110 bp
atgactcctggggatttcaacagttggggtgctcagaatcatagagcaaaaatagggcactggccatcttctatcagcgcggcggagctttcctggaaaccgtcttctgggttcgacctccagatcaaggccatcgagttcccaagtgaagaggctggtctgctaaaaggttgtgagaatctctactcatcaaaggcccgcaaacatgatgatgcagtgatgagccatgaaggtgatcgaaggtcggggactatgtttcaggcaatgaatttagggtcagtttcatgttctgctgagaccaccgaagtgtacactcctcaagtagcggatgagttgaagcctacaaaaaaccgtcaatttagaacactagatgagctttttgaattttacaacaagtatgcttttgaagctgggtttagtgttcggagaagttctactgccaagagtaaagatggttctgaaactataagacaagaactttgttgtcgcaaagaagggcattcacagaaacatacggctctgccaaaaaagcggaaagggatcataagaactggttgtctagcaaagattgcagctgtgaagagatgtggcatatatgtaatcactcaatttacggaggctcataaccatcctttgacaactccagagagagttcatttgttaccatctcatcgtcaagtttcaaatgctaccaaatgcttaaccatggaacttggactggtaaatattccaacccacaaacaaatcagtttgcttgaagttcaatcgggaggaattgagaatatgggttgcatagggaaagatatatacaattatgaaagagataagcgagaagagttgaaaggacatgatggagatatgttgtatgctcattttttagcacagcgggagaagaattcatttttcaatttcaagatagaggaagacaatgaaaatagaatcaaacattgtttttgggcagatgcgacctctaggagggcttatagtttctttggggatgtagttatctttgatacaacctacaacactaacaaatatcggctgatatttgcaccactattaggggttaaccaccatggtcagaccattatgtttggttgtgcattctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

369

Amino Acids

41.79

Weight (kDa)

8.69

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 80
AciI CCGC 6 cut(s) 80, 83, 199, 326, 532, 886
AclWI GGATC 1 cut(s) 548
AcoI YGGCCR 1 cut(s) 62
AcsI RAATTY 3 cut(s) 268, 383, 895
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 4 cut(s) 107, 127, 975, 1061
AjnI CCWGG 2 cut(s) 7, 92
AleI CACNNNNGTG 1 cut(s) 305
AluBI AGCT 4 cut(s) 88, 376, 410, 575
AluI AGCT 4 cut(s) 88, 376, 410, 575
Alw21I GWGCWC 1 cut(s) 34
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 1 cut(s) 548
AoxI GGCC 3 cut(s) 62, 129, 195
ApeKI GCWGC 1 cut(s) 572
ApoI RAATTY 3 cut(s) 268, 383, 895
ArsI GACNNNNNNTTYG 2 cut(s) 462, 494
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 245
BaeGI GKGCMC 1 cut(s) 60
BalI TGGCCA 1 cut(s) 64
BbsI GAAGAC 2 cut(s) 96, 930
Bbv12I GWGCWC 1 cut(s) 34
BbvI GCAGC 1 cut(s) 584
BccI CCATC 6 cut(s) 73, 140, 446, 636, 673, 845
BceAI ACGGC 1 cut(s) 531
BciT130I CCWGG 2 cut(s) 9, 94
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 3 cut(s) 368, 560, 972
BisI GCNGC 2 cut(s) 81, 573
BlsI GCNGC 2 cut(s) 82, 574
Bme1390I CCNGG 2 cut(s) 9, 94
BmgT120I GGNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 9, 94
BmsI GCATC 2 cut(s) 202, 952
BpiI GAAGAC 2 cut(s) 96, 930
BpmI CTGGAG 2 cut(s) 104, 627
BpuEI CTTGAG 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 3 cut(s) 8, 705, 1075
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 127, 975, 1061
Bse1I ACTGG 3 cut(s) 65, 556, 723
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 2 cut(s) 9, 94
BseDI CCNNGG 3 cut(s) 8, 705, 1075
BseGI GGATG 3 cut(s) 334, 628, 1003
BseLI CCNNNNNNNGG 4 cut(s) 107, 127, 975, 1061
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 47, 285
BseNI ACTGG 3 cut(s) 65, 556, 723
BseRI GAGGAG 1 cut(s) 306
BseSI GKGCMC 1 cut(s) 60
BseXI GCAGC 1 cut(s) 584
BseYI CCCAGC 1 cut(s) 410
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 3 cut(s) 64, 131, 197
BsiHKAI GWGCWC 1 cut(s) 34
BslFI GGGAC 1 cut(s) 262
BslI CCNNNNNNNGG 4 cut(s) 107, 127, 975, 1061
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 262
BsmI GAATGC 2 cut(s) 499, 1103
BsnI GGCC 3 cut(s) 64, 131, 197
Bso31I GGTCTC 1 cut(s) 290
Bsp1286I GDGCHC 2 cut(s) 34, 60
Bsp1407I TGTACA 1 cut(s) 309
Bsp143I GATC 3 cut(s) 123, 235, 540
Bsp19I CCATGG 2 cut(s) 705, 1075
BspACI CCGC 6 cut(s) 80, 83, 199, 326, 532, 886
BspANI GGCC 3 cut(s) 64, 131, 197
BspCNI CTCAG 2 cut(s) 46, 286
BspFNI CGCG 1 cut(s) 80
BspPI GGATC 1 cut(s) 548
BspTNI GGTCTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 270
BsrGI TGTACA 1 cut(s) 309
BsrI ACTGG 3 cut(s) 65, 556, 723
BssECI CCNNGG 3 cut(s) 8, 705, 1075
BssMI GATC 3 cut(s) 123, 235, 540
BssT1I CCWWGG 2 cut(s) 705, 1075
Bst2UI CCWGG 2 cut(s) 9, 94
Bst4CI ACNGT 3 cut(s) 23, 102, 353
Bst6I CTCTTC 3 cut(s) 144, 575, 828
BstAPI GCANNNNNTGC 1 cut(s) 569
BstAUI TGTACA 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 2 cut(s) 33, 294
BstDSI CCRYGG 2 cut(s) 705, 1075
BstENI CCTNNNNNAGG 1 cut(s) 973
BstF5I GGATG 3 cut(s) 334, 628, 1003
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 3 cut(s) 126, 238, 543
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 3 cut(s) 123, 235, 540
BstMWI GCNNNNNNNGC 3 cut(s) 407, 529, 569
BstNI CCWGG 2 cut(s) 9, 94
BstSCI CCNGG 2 cut(s) 7, 92
BstSLI GKGCMC 1 cut(s) 60
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 584
BstV2I GAAGAC 2 cut(s) 96, 930
BsuRI GGCC 3 cut(s) 64, 131, 197
BtgI CCRYGG 2 cut(s) 705, 1075
BtsCI GGATG 3 cut(s) 334, 628, 1003
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 2 cut(s) 58, 222
Cac8I GCNNGC 1 cut(s) 199
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 310
CviAII CATG 6 cut(s) 206, 227, 285, 706, 848, 1076
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 2 cut(s) 33, 294
DpnI GATC 3 cut(s) 125, 237, 542
DpnII GATC 3 cut(s) 123, 235, 540
EaeI YGGCCR 1 cut(s) 62
Eam1104I CTCTTC 3 cut(s) 144, 575, 828
EarI CTCTTC 3 cut(s) 144, 575, 828
EciI GGCGGA 1 cut(s) 98
Eco130I CCWWGG 2 cut(s) 705, 1075
Eco31I GGTCTC 1 cut(s) 290
EcoNI CCTNNNNNAGG 1 cut(s) 973
EcoRI GAATTC 1 cut(s) 895
EcoRII CCWGG 2 cut(s) 7, 92
EcoT14I CCWWGG 2 cut(s) 705, 1075
ErhI CCWWGG 2 cut(s) 705, 1075
FaeI CATG 6 cut(s) 209, 230, 288, 709, 851, 1079
FaqI GGGAC 1 cut(s) 262
FatI CATG 6 cut(s) 205, 226, 284, 705, 847, 1075
FauI CCCGC 2 cut(s) 206, 879
Fnu4HI GCNGC 2 cut(s) 81, 573
FokI GGATG 3 cut(s) 341, 615, 1010
Fsp4HI GCNGC 2 cut(s) 81, 573
FspBI CTAG 3 cut(s) 368, 560, 972
GlaI GCGC 1 cut(s) 79
GluI GCNGC 2 cut(s) 81, 573
GsaI CCCAGC 1 cut(s) 414
GsuI CTGGAG 2 cut(s) 104, 627
HaeIII GGCC 3 cut(s) 64, 131, 197
HhaI GCGC 1 cut(s) 80
Hin1II CATG 6 cut(s) 209, 230, 288, 709, 851, 1079
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 1069
HindII GTYRAC 1 cut(s) 1069
HinfI GANTC 4 cut(s) 4, 37, 178, 939
HpaI GTTAAC 1 cut(s) 1069
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 3 cut(s) 310, 312, 1069
Hpy188I TCNGA 4 cut(s) 36, 426, 460, 1083
Hpy188III TCNNGA 4 cut(s) 121, 644, 768, 913
Hpy8I GTNNAC 3 cut(s) 310, 312, 1069
HpyAV CCTTC 3 cut(s) 224, 234, 488
HpyCH4III ACNGT 3 cut(s) 23, 102, 353
HpyCH4V TGCA 5 cut(s) 215, 572, 792, 1052, 1103
HpyF10VI GCNNNNNNNGC 3 cut(s) 407, 529, 569
HpyF3I CTNAG 2 cut(s) 33, 294
Hsp92II CATG 6 cut(s) 209, 230, 288, 709, 851, 1079
HspAI GCGC 1 cut(s) 78
KspAI GTTAAC 1 cut(s) 1069
Kzo9I GATC 3 cut(s) 123, 235, 540
LmnI GCTCC 1 cut(s) 85
Lsp1109I GCAGC 1 cut(s) 584
LweI GCATC 2 cut(s) 202, 952
MaeI CTAG 3 cut(s) 368, 560, 972
MaeIII GTNAC 1 cut(s) 660
MalI GATC 3 cut(s) 125, 237, 542
MboI GATC 3 cut(s) 123, 235, 540
MboII GAAGA 7 cut(s) 60, 96, 161, 592, 845, 904, 935
MhlI GDGCHC 2 cut(s) 34, 60
MlsI TGGCCA 1 cut(s) 64
MluCI AATT 8 cut(s) 268, 356, 383, 608, 774, 811, 895, 907
MluNI TGGCCA 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 755
MnlI CCTC 8 cut(s) 128, 145, 327, 610, 764, 913, 969, 979
Mox20I TGGCCA 1 cut(s) 64
MscI TGGCCA 1 cut(s) 64
MseI TTAA 2 cut(s) 701, 1068
MslI CAYNNNNRTG 3 cut(s) 210, 231, 305
Msp20I TGGCCA 1 cut(s) 64
MspA1I CMGCKG 2 cut(s) 575, 886
MspR9I CCNGG 2 cut(s) 9, 94
Mva1269I GAATGC 2 cut(s) 499, 1103
MvaI CCWGG 2 cut(s) 9, 94
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 3 cut(s) 407, 529, 569
NcoI CCATGG 2 cut(s) 705, 1075
NdeII GATC 3 cut(s) 123, 235, 540
NlaIII CATG 6 cut(s) 209, 230, 288, 709, 851, 1079
OliI CACNNNNGTG 1 cut(s) 305
PctI GAATGC 2 cut(s) 499, 1103
PfeI GAWTC 3 cut(s) 37, 178, 939
PfoI TCCNGGA 1 cut(s) 92
PkrI GCNGC 2 cut(s) 82, 574
Psp6I CCWGG 2 cut(s) 7, 92
PspFI CCCAGC 1 cut(s) 410
PspGI CCWGG 2 cut(s) 7, 92
PspPI GGNCC 1 cut(s) 196
PsrI GAACNNNNNNTAC 2 cut(s) 439, 471
PvuII CAGCTG 1 cut(s) 575
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 3 cut(s) 210, 231, 305
SaqAI TTAA 2 cut(s) 701, 1068
SatI GCNGC 2 cut(s) 81, 573
Sau3AI GATC 3 cut(s) 123, 235, 540
Sau96I GGNCC 1 cut(s) 196
ScrFI CCNGG 2 cut(s) 9, 94
SduI GDGCHC 2 cut(s) 34, 60
SfaNI GCATC 2 cut(s) 202, 952
SmiMI CAYNNNNRTG 3 cut(s) 210, 231, 305
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
Sse9I AATT 8 cut(s) 268, 356, 383, 608, 774, 811, 895, 907
SsiI CCGC 6 cut(s) 80, 83, 199, 326, 532, 886
SspI AATATT 1 cut(s) 727
SspMI CTAG 3 cut(s) 368, 560, 972
StyD4I CCNGG 2 cut(s) 7, 92
StyI CCWWGG 2 cut(s) 705, 1075
TaaI ACNGT 3 cut(s) 23, 102, 353
TaqI TCGA 3 cut(s) 114, 135, 238
TasI AATT 8 cut(s) 268, 356, 383, 608, 774, 811, 895, 907
TatI WGTACW 1 cut(s) 309
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 3 cut(s) 37, 178, 939
Tru1I TTAA 2 cut(s) 701, 1068
Tru9I TTAA 2 cut(s) 701, 1068
TscAI CASTG 2 cut(s) 65, 222
TseI GCWGC 1 cut(s) 572
TspDTI ATGAA 7 cut(s) 243, 273, 281, 644, 831, 888, 945
TspGWI ACGGA 1 cut(s) 629
TspRI CASTG 2 cut(s) 65, 222
XagI CCTNNNNNAGG 1 cut(s) 973
XapI RAATTY 3 cut(s) 268, 383, 895
XspI CTAG 3 cut(s) 368, 560, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.