Rmu_sc0005114.1_g000012

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005114.1
OG0000164
Physical Location & Seq
Reverse (-)
23004 .. 25386
2383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005114.1_g000012.1.cds

Sequence Viewer

Length: 1233 bp
atgtttcaggcaatgaatttatggtcagtttcatgttctgctgagaccaccaatgtgtacactcctcaagtagcagatgtgttgaagcctacaaaaagccttgaatttagaacactagatggagtttttgaattttaccacaagtatgcttttgaagctgggtttagtgttcggagaagtactactactaggagtaaagatggggttaaccaccatggccagaccattatgtttggttgtgcattcttaggtgatgaatccacagagtcgtttgtttggctactcaatacattcttagaagcaattccaggaggaagtcccccaaaaatgataattacttatcaagatcctgctatgaagattgccattgaccaagttcttcctaacacattccataggtattgcagctggcacatattaaataagttttatgaaaagataggtgctgtcaaatgtaatgattattatgatgactttagaagctgtgtatggaacttggagatgacaggagaatttgataagaagtggaaggaagttgttgagaggagtagcttaagtgacaatggatggcttcaatcaatttatgacattcgagcatcatgggtgcctgcatattgtaatcacattttctcggctggaatgtcaagtagccaacgtgctgaaagttgtcattcatttttcaataagtatgttgaccacaaaaattcattactagactttgtgattccctttaatagaggacttgtacatcaacgtcatcaaaagttagtttctgcccatgttgatgcgaatgatgagcctcagttgaatactcctcatcctatggaatctcaaatgtctggaatttatactcatgcctgtttccaacaatttcaaattaaggacctagatgggttggtgataacagatacaaatgcattggtggtgaagtgtagtaaattatttcatcatgcttcacttgttattgacaaagtccttacaagtcctaatgaagctcagaccatgtttcttgagacacttgataatgtgcttgataagctcaaacaaatgcaagtcaatagtagtgaaagtgtgagtatcggtaagaagttgccgagtgatgttcaacatagttctcttcttgacaaatctgggggcaaggagtcaggttcctttgcgaaagatgatgacgagccaatatcaactgatgaagatgaggactccagttccttcgatgaagatgatgacaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

410

Amino Acids

46.46

Weight (kDa)

5.17

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 604
AclWI GGATC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 217
AcsI RAATTY 6 cut(s) 16, 104, 131, 512, 703, 843
AfaI GTAC 3 cut(s) 59, 181, 747
AflII CTTAAG 1 cut(s) 553
AgsI TTSAA 9 cut(s) 85, 104, 131, 155, 575, 682, 808, 875, 1106
AjnI CCWGG 1 cut(s) 307
AleI CACNNNNGTG 1 cut(s) 53
AluBI AGCT 6 cut(s) 158, 408, 483, 552, 995, 1039
AluI AGCT 6 cut(s) 158, 408, 483, 552, 995, 1039
Alw26I GTCTC 2 cut(s) 38, 1007
AlwI GGATC 1 cut(s) 341
AoxI GGCC 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 405
ApoI RAATTY 6 cut(s) 16, 104, 131, 512, 703, 843
Asp700I GAANNNNTTC 1 cut(s) 303
AspS9I GGNCC 1 cut(s) 883
AsuHPI GGTGA 3 cut(s) 263, 910, 937
AvaII GGWCC 1 cut(s) 883
BalI TGGCCA 1 cut(s) 219
BanI GGYRCC 1 cut(s) 604
BarI GAAGNNNNNNTAC 2 cut(s) 169, 201
BbvI GCAGC 1 cut(s) 417
BccI CCATC 4 cut(s) 113, 194, 561, 884
BciT130I CCWGG 1 cut(s) 309
BcoDI GTCTC 2 cut(s) 38, 1007
BfaI CTAG 4 cut(s) 116, 189, 713, 887
BfrI CTTAAG 1 cut(s) 553
BisI GCNGC 1 cut(s) 406
BlsI GCNGC 1 cut(s) 407
BmcAI AGTACT 1 cut(s) 181
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 883
BmgT120I GGNCC 1 cut(s) 883
BmiI GGNNCC 2 cut(s) 606, 1150
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 2 cut(s) 605, 775
BpmI CTGGAG 1 cut(s) 1186
BpuEI CTTGAG 2 cut(s) 51, 1031
BsaI GGTCTC 1 cut(s) 38
BsaJI CCNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 1203
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 2 cut(s) 572, 817
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 3 cut(s) 33, 815, 1010
BseNI ACTGG 1 cut(s) 1203
BseRI GAGGAG 3 cut(s) 54, 559, 804
BseXI GCAGC 1 cut(s) 417
BseYI CCCAGC 1 cut(s) 158
BshFI GGCC 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 604
BslFI GGGAC 1 cut(s) 303
BsmAI GTCTC 2 cut(s) 38, 1007
BsmFI GGGAC 1 cut(s) 303
BsmI GAATGC 1 cut(s) 242
BsnI GGCC 1 cut(s) 219
Bso31I GGTCTC 1 cut(s) 38
Bsp1407I TGTACA 2 cut(s) 57, 745
Bsp143I GATC 1 cut(s) 346
Bsp19I CCATGG 1 cut(s) 214
BspANI GGCC 1 cut(s) 219
BspCNI CTCAG 3 cut(s) 34, 814, 1009
BspLI GGNNCC 2 cut(s) 606, 1150
BspPI GGATC 1 cut(s) 341
BspT107I GGYRCC 1 cut(s) 604
BspTI CTTAAG 1 cut(s) 553
BspTNI GGTCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 18
BsrGI TGTACA 2 cut(s) 57, 745
BsrI ACTGG 1 cut(s) 1203
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 1 cut(s) 346
BssT1I CCWWGG 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 309
Bst6I CTCTTC 1 cut(s) 1122
BstAFI CTTAAG 1 cut(s) 553
BstAUI TGTACA 2 cut(s) 57, 745
BstC8I GCNNGC 2 cut(s) 410, 609
BstDEI CTNAG 5 cut(s) 42, 247, 295, 801, 996
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 2 cut(s) 572, 817
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 2 cut(s) 38, 1007
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 155, 1036
BstNI CCWGG 1 cut(s) 309
BstSCI CCNGG 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BsuRI GGCC 1 cut(s) 219
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 2 cut(s) 572, 817
Cac8I GCNNGC 2 cut(s) 410, 609
Cfr13I GGNCC 1 cut(s) 883
Csp6I GTAC 3 cut(s) 58, 180, 746
CviAII CATG 7 cut(s) 33, 215, 600, 779, 854, 950, 1003
CviQI GTAC 3 cut(s) 58, 180, 746
DdeI CTNAG 5 cut(s) 42, 247, 295, 801, 996
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
EaeI YGGCCR 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 1122
EarI CTCTTC 1 cut(s) 1122
Eco130I CCWWGG 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 883
EcoO109I RGGNCCY 1 cut(s) 883
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 919
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 7 cut(s) 36, 218, 603, 782, 857, 953, 1006
FaqI GGGAC 1 cut(s) 303
FatI CATG 7 cut(s) 32, 214, 599, 778, 853, 949, 1002
Fnu4HI GCNGC 1 cut(s) 406
FokI GGATG 2 cut(s) 579, 804
Fsp4HI GCNGC 1 cut(s) 406
FspBI CTAG 4 cut(s) 116, 189, 713, 887
GluI GCNGC 1 cut(s) 406
GsaI CCCAGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 1186
HaeIII GGCC 1 cut(s) 219
Hin1II CATG 7 cut(s) 36, 218, 603, 782, 857, 953, 1006
HincII GTYRAC 2 cut(s) 208, 694
HindII GTYRAC 2 cut(s) 208, 694
HinfI GANTC 6 cut(s) 257, 266, 724, 827, 1142, 1199
HpaI GTTAAC 1 cut(s) 208
HphI GGTGA 3 cut(s) 263, 910, 937
Hpy166II GTNNAC 4 cut(s) 58, 60, 208, 694
Hpy188I TCNGA 2 cut(s) 174, 999
Hpy188III TCNNGA 4 cut(s) 344, 840, 1010, 1121
Hpy8I GTNNAC 4 cut(s) 58, 60, 208, 694
HpyAV CCTTC 2 cut(s) 523, 1219
HpyCH4IV ACGT 2 cut(s) 655, 754
HpyCH4V TGCA 5 cut(s) 242, 405, 611, 917, 1051
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 1036
HpyF3I CTNAG 5 cut(s) 42, 247, 295, 801, 996
HpySE526I ACGT 2 cut(s) 655, 754
Hsp92II CATG 7 cut(s) 36, 218, 603, 782, 857, 953, 1006
KspAI GTTAAC 1 cut(s) 208
Kzo9I GATC 1 cut(s) 346
Lsp1109I GCAGC 1 cut(s) 417
LweI GCATC 2 cut(s) 605, 775
MaeI CTAG 4 cut(s) 116, 189, 713, 887
MaeII ACGT 2 cut(s) 655, 754
MaeIII GTNAC 1 cut(s) 557
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 5 cut(s) 370, 371, 1109, 1202, 1229
MflI RGATCY 1 cut(s) 346
MlsI TGGCCA 1 cut(s) 219
MluNI TGGCCA 1 cut(s) 219
MlyI GAGTC 3 cut(s) 275, 1151, 1193
MmeI TCCRAC 1 cut(s) 889
MnlI CCTC 7 cut(s) 75, 305, 537, 731, 810, 825, 1189
Mox20I TGGCCA 1 cut(s) 219
Mph1103I ATGCAT 1 cut(s) 919
MroXI GAANNNNTTC 1 cut(s) 303
MscI TGGCCA 1 cut(s) 219
MseI TTAA 6 cut(s) 207, 419, 554, 732, 879, 1231
MslI CAYNNNNRTG 3 cut(s) 53, 144, 783
Msp20I TGGCCA 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 408
MspCI CTTAAG 1 cut(s) 553
MspR9I CCNGG 1 cut(s) 309
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 2 cut(s) 155, 1036
NcoI CCATGG 1 cut(s) 214
NdeII GATC 1 cut(s) 346
NlaIII CATG 7 cut(s) 36, 218, 603, 782, 857, 953, 1006
NlaIV GGNNCC 2 cut(s) 606, 1150
NmeAIII GCCGAG 2 cut(s) 611, 1119
NmuCI GTSAC 1 cut(s) 557
NsiI ATGCAT 1 cut(s) 919
OliI CACNNNNGTG 1 cut(s) 53
PctI GAATGC 1 cut(s) 242
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 3 cut(s) 257, 724, 827
PflFI GACNNNGTC 1 cut(s) 971
PfoI TCCNGGA 1 cut(s) 307
PkrI GCNGC 1 cut(s) 407
PleI GAGTC 3 cut(s) 274, 1150, 1193
PpsI GAGTC 3 cut(s) 274, 1150, 1193
PpuMI RGGWCCY 1 cut(s) 883
Psp5II RGGWCCY 1 cut(s) 883
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 2 cut(s) 606, 1150
PspPI GGNCC 1 cut(s) 883
PspPPI RGGWCCY 1 cut(s) 883
PsuI RGATCY 1 cut(s) 346
PsyI GACNNNGTC 1 cut(s) 971
PvuII CAGCTG 1 cut(s) 408
RsaI GTAC 3 cut(s) 59, 181, 747
RsaNI GTAC 3 cut(s) 58, 180, 746
RseI CAYNNNNRTG 3 cut(s) 53, 144, 783
SaqAI TTAA 6 cut(s) 207, 419, 554, 732, 879, 1231
SatI GCNGC 1 cut(s) 406
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 1 cut(s) 883
ScaI AGTACT 1 cut(s) 181
SchI GAGTC 3 cut(s) 275, 1151, 1193
ScrFI CCNGG 1 cut(s) 309
SfaNI GCATC 2 cut(s) 605, 775
SinI GGWCC 1 cut(s) 883
SmiMI CAYNNNNRTG 3 cut(s) 53, 144, 783
SmlI CTYRAG 3 cut(s) 66, 553, 1010
SmoI CTYRAG 3 cut(s) 66, 553, 1010
SspMI CTAG 4 cut(s) 116, 189, 713, 887
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 1 cut(s) 214
TaiI ACGT 2 cut(s) 658, 757
TaqI TCGA 2 cut(s) 592, 1212
TatI WGTACW 3 cut(s) 57, 179, 745
TfiI GAWTC 3 cut(s) 257, 724, 827
Tru1I TTAA 6 cut(s) 207, 419, 554, 732, 879, 1231
Tru9I TTAA 6 cut(s) 207, 419, 554, 732, 879, 1231
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 1 cut(s) 405
Tsp45I GTSAC 1 cut(s) 557
Tth111I GACNNNGTC 1 cut(s) 971
Vha464I CTTAAG 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 883
XapI RAATTY 6 cut(s) 16, 104, 131, 512, 703, 843
XmnI GAANNNNTTC 1 cut(s) 303
XspI CTAG 4 cut(s) 116, 189, 713, 887
ZrmI AGTACT 1 cut(s) 181
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.