Rmu_ssc0000120.1_g000016

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000120.1
Physical Location & Seq
Forward (+)
94582 .. 95145
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000120.1_g000016.1.cds

Sequence Viewer

Length: 564 bp
atggatgattttgcatcatgcagctgtagaaagtttgagagtaaagggctcccgtgtcgacctgttttttcatatttgattaacatccaagatgttgataaattgcctactcagtacatcttgaagagatggactaaagctgcaagacagagtcttgtgttagattttgatggaatggaaattaaagacaacaaagctttacttgcaaggaggactaaactattgcagcatgctacaaatgcaattgataaggcaatggtgagtgaggaggctagccagctctttatgaaatccttggatgctttcttggagaatattaaaacattgattggtaacgaaagccaacaaaatgtagtagttctagagaccaaggttgataatgttcaacatatttttaatgaaccagatcaagtgagggcaaaagggtgtggaagaaggttgaagaaaggaaaagagaagaggaaagttaaggtaaaggacagtcaaggtaggcaatgccatggatgtggactatttggccagtcacatgataaaagaaattgtccaacacttcatggaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

187

Amino Acids

21.25

Weight (kDa)

9.49

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 58
AcoI YGGCCR 1 cut(s) 517
AfaI GTAC 1 cut(s) 116
AgsI TTSAA 3 cut(s) 124, 386, 442
AluBI AGCT 4 cut(s) 24, 140, 197, 280
AluI AGCT 4 cut(s) 24, 140, 197, 280
Alw26I GTCTC 1 cut(s) 359
AoxI GGCC 1 cut(s) 517
ApeKI GCWGC 3 cut(s) 21, 140, 226
AsuHPI GGTGA 1 cut(s) 271
AsuNHI GCTAGC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 519
BanII GRGCYC 1 cut(s) 51
BbvI GCAGC 3 cut(s) 33, 127, 238
BccI CCATC 2 cut(s) 123, 164
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 2 cut(s) 273, 362
BfmI CTRYAG 1 cut(s) 25
BisI GCNGC 3 cut(s) 22, 141, 227
BlsI GCNGC 3 cut(s) 23, 142, 228
BmiI GGNNCC 1 cut(s) 50
BmsI GCATC 2 cut(s) 23, 289
BmtI GCTAGC 1 cut(s) 276
BsaBI GATNNNNATC 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 359
BsaJI CCNNGG 3 cut(s) 294, 369, 499
Bse1I ACTGG 1 cut(s) 520
Bse3DI GCAATG 2 cut(s) 261, 500
Bse8I GATNNNNATC 1 cut(s) 83
BseDI CCNNGG 3 cut(s) 294, 369, 499
BseGI GGATG 4 cut(s) 10, 84, 304, 509
BseJI GATNNNNATC 1 cut(s) 83
BseMI GCAATG 2 cut(s) 261, 500
BseMII CTCAG 1 cut(s) 125
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 3 cut(s) 33, 127, 238
BshFI GGCC 1 cut(s) 519
BsmAI GTCTC 1 cut(s) 359
BsnI GGCC 1 cut(s) 519
Bso31I GGTCTC 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 406
Bsp19I CCATGG 1 cut(s) 499
BspANI GGCC 1 cut(s) 519
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 50
BspOI GCTAGC 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 359
BsrDI GCAATG 2 cut(s) 261, 500
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 3 cut(s) 294, 369, 499
BssMI GATC 1 cut(s) 406
BssT1I CCWWGG 3 cut(s) 294, 369, 499
Bst4CI ACNGT 1 cut(s) 482
Bst6I CTCTTC 2 cut(s) 119, 452
BstC8I GCNNGC 3 cut(s) 231, 274, 278
BstDEI CTNAG 1 cut(s) 111
BstDSI CCRYGG 1 cut(s) 499
BstF5I GGATG 4 cut(s) 10, 84, 304, 509
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 1 cut(s) 406
BstMWI GCNNNNNNNGC 2 cut(s) 203, 239
BstNSI RCATGY 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 25
BstV1I GCAGC 3 cut(s) 33, 127, 238
BstXI CCANNNNNNTGG 1 cut(s) 506
BsuRI GGCC 1 cut(s) 519
BtgI CCRYGG 1 cut(s) 499
BtsCI GGATG 4 cut(s) 10, 84, 304, 509
Cac8I GCNNGC 3 cut(s) 231, 274, 278
Csp6I GTAC 1 cut(s) 115
CviAII CATG 5 cut(s) 18, 230, 500, 527, 554
CviJI RGCY 9 cut(s) 24, 49, 140, 197, 272, 276, 280, 342, 519
CviKI_1 RGCY 9 cut(s) 24, 49, 140, 197, 272, 276, 280, 342, 519
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
EaeI YGGCCR 1 cut(s) 517
Eam1104I CTCTTC 2 cut(s) 119, 452
EarI CTCTTC 2 cut(s) 119, 452
Eco130I CCWWGG 3 cut(s) 294, 369, 499
Eco24I GRGCYC 1 cut(s) 51
Eco31I GGTCTC 1 cut(s) 359
EcoT14I CCWWGG 3 cut(s) 294, 369, 499
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 3 cut(s) 294, 369, 499
FaeI CATG 5 cut(s) 21, 233, 503, 530, 557
FaiI YATR 8 cut(s) 19, 73, 231, 287, 390, 501, 528, 555
FalI AAGNNNNNCTT 2 cut(s) 186, 218
FatI CATG 5 cut(s) 17, 229, 499, 526, 553
FblI GTMKAC 1 cut(s) 58
Fnu4HI GCNGC 3 cut(s) 22, 141, 227
FokI GGATG 4 cut(s) 17, 71, 311, 516
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 3 cut(s) 22, 141, 227
FspBI CTAG 2 cut(s) 273, 362
GluI GCNGC 3 cut(s) 22, 141, 227
HaeIII GGCC 1 cut(s) 519
Hin1II CATG 5 cut(s) 21, 233, 503, 530, 557
HincII GTYRAC 1 cut(s) 59
HindII GTYRAC 1 cut(s) 59
HindIII AAGCTT 1 cut(s) 195
HinfI GANTC 1 cut(s) 151
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 2 cut(s) 59, 509
Hpy188III TCNNGA 2 cut(s) 121, 362
Hpy8I GTNNAC 2 cut(s) 59, 509
HpyAV CCTTC 1 cut(s) 429
HpyCH4III ACNGT 1 cut(s) 482
HpyCH4V TGCA 6 cut(s) 14, 21, 143, 206, 226, 242
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 239
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 5 cut(s) 21, 233, 503, 530, 557
Kzo9I GATC 1 cut(s) 406
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 4 cut(s) 75, 290, 417, 533
Lsp1109I GCAGC 3 cut(s) 33, 127, 238
LweI GCATC 2 cut(s) 23, 289
MaeI CTAG 2 cut(s) 273, 362
MaeIII GTNAC 2 cut(s) 332, 522
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 4 cut(s) 136, 444, 454, 469
MfeI CAATTG 1 cut(s) 243
MhlI GDGCHC 1 cut(s) 51
MlsI TGGCCA 1 cut(s) 519
MluCI AATT 4 cut(s) 101, 180, 243, 538
MluNI TGGCCA 1 cut(s) 519
MlyI GAGTC 1 cut(s) 160
MnlI CCTC 5 cut(s) 204, 259, 262, 408, 453
Mox20I TGGCCA 1 cut(s) 519
MscI TGGCCA 1 cut(s) 519
MseI TTAA 5 cut(s) 81, 183, 318, 396, 468
MslI CAYNNNNRTG 1 cut(s) 504
Msp20I TGGCCA 1 cut(s) 519
MspA1I CMGCKG 1 cut(s) 24
MunI CAATTG 1 cut(s) 243
MwoI GCNNNNNNNGC 2 cut(s) 203, 239
NcoI CCATGG 1 cut(s) 499
NdeII GATC 1 cut(s) 406
NheI GCTAGC 1 cut(s) 272
NlaIII CATG 5 cut(s) 21, 233, 503, 530, 557
NlaIV GGNNCC 1 cut(s) 50
NmuCI GTSAC 1 cut(s) 522
NspI RCATGY 1 cut(s) 233
PaeI GCATGC 1 cut(s) 233
PflFI GACNNNGTC 1 cut(s) 150
PkrI GCNGC 3 cut(s) 23, 142, 228
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
PspN4I GGNNCC 1 cut(s) 50
PsyI GACNNNGTC 1 cut(s) 150
PvuII CAGCTG 1 cut(s) 24
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
RseI CAYNNNNRTG 1 cut(s) 504
SalI GTCGAC 1 cut(s) 57
SaqAI TTAA 5 cut(s) 81, 183, 318, 396, 468
SatI GCNGC 3 cut(s) 22, 141, 227
Sau3AI GATC 1 cut(s) 406
SchI GAGTC 1 cut(s) 160
SduI GDGCHC 1 cut(s) 51
SetI ASST 9 cut(s) 26, 64, 142, 199, 282, 375, 440, 474, 490
SfaNI GCATC 2 cut(s) 23, 289
SfcI CTRYAG 1 cut(s) 25
SmiMI CAYNNNNRTG 1 cut(s) 504
SphI GCATGC 1 cut(s) 233
Sse9I AATT 4 cut(s) 101, 180, 243, 538
SspI AATATT 1 cut(s) 316
SspMI CTAG 2 cut(s) 273, 362
StyI CCWWGG 3 cut(s) 294, 369, 499
TaaI ACNGT 1 cut(s) 482
TaqI TCGA 1 cut(s) 58
TasI AATT 4 cut(s) 101, 180, 243, 538
TatI WGTACW 1 cut(s) 114
Tru1I TTAA 5 cut(s) 81, 183, 318, 396, 468
Tru9I TTAA 5 cut(s) 81, 183, 318, 396, 468
TseFI GTSAC 1 cut(s) 522
TseI GCWGC 3 cut(s) 21, 140, 226
Tsp45I GTSAC 1 cut(s) 522
TspDTI ATGAA 4 cut(s) 60, 302, 414, 542
Tth111I GACNNNGTC 1 cut(s) 150
XbaI TCTAGA 1 cut(s) 361
XceI RCATGY 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 58
XspI CTAG 2 cut(s) 273, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.