Rmu_sc0003023.1_g000001

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003023.1
OG0000164
Physical Location & Seq
Reverse (-)
6931 .. 8619
1689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003023.1_g000001.1.cds

Sequence Viewer

Length: 720 bp
atggatggagatgaggaaaacagagtaacacggtgcttttgggctgactcaatttcaagacgagcttatagcttttatggagatgtagttatctttgatactacatacaacacaaatcgctgtagaaagtttgacagtgaagggctcccatgtcggcatgttttggcatatttgattaagatccaagatgttgataaattgcctattcagtacatcttgaagagatggactaaagctgcaagacagagagttgtgttagatgctgatggaatggagataaaagataacaaagctttacttgcaaggaggactaaactattccagcatggtacatatgcaatggataaggttatggtgagtgatgaggctacccagctctttatggaagcattggatgcttttttggagaatattaaaccattaattagtaatgaaagtggacaaagtgcagtaggtttagagaccaagactgatactattcagcatgtttttaatgaaccagatcaagtgagagcaaaagggtgtgggagaaggttgaagaaagttaaggtaaaggacagtcaaggtaggcaatgccatggatgtggattatttggtcagtcacatgacaaaagaaattgtccaactcttcatggaagacctgctattgataaagatagggattcaagttccactagtatggatgaggatagttgttcatcatctcatttcgcagaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

239

Amino Acids

27.16

Weight (kDa)

8.08

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 649
AclWI GGATC 1 cut(s) 175
AfaI GTAC 2 cut(s) 212, 331
AgsI TTSAA 4 cut(s) 57, 220, 538, 666
AhlI ACTAGT 1 cut(s) 674
AluBI AGCT 5 cut(s) 65, 72, 236, 293, 376
AluI AGCT 5 cut(s) 65, 72, 236, 293, 376
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 1 cut(s) 175
ApeKI GCWGC 1 cut(s) 236
AseI ATTAAT 1 cut(s) 422
AsuHPI GGTGA 1 cut(s) 367
BanII GRGCYC 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 643
BbvI GCAGC 1 cut(s) 223
BccI CCATC 2 cut(s) 219, 260
BcoDI GTCTC 1 cut(s) 455
BcuI ACTAGT 1 cut(s) 674
BfaI CTAG 1 cut(s) 675
BfmI CTRYAG 1 cut(s) 121
BfuAI ACCTGC 1 cut(s) 649
BisI GCNGC 1 cut(s) 237
BlsI GCNGC 1 cut(s) 238
BmiI GGNNCC 1 cut(s) 146
BmsI GCATC 2 cut(s) 250, 385
BpiI GAAGAC 1 cut(s) 643
BsaBI GATNNNNATC 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 1 cut(s) 577
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bse3DI GCAATG 2 cut(s) 345, 578
Bse8I GATNNNNATC 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 577
BseGI GGATG 4 cut(s) 10, 400, 587, 688
BseJI GATNNNNATC 1 cut(s) 179
BseMI GCAATG 2 cut(s) 345, 578
BseXI GCAGC 1 cut(s) 223
BseYI CCCAGC 1 cut(s) 372
BsgI GTGCAG 1 cut(s) 468
BsmAI GTCTC 1 cut(s) 455
Bso31I GGTCTC 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 180, 502
Bsp19I CCATGG 1 cut(s) 577
BspLI GGNNCC 1 cut(s) 146
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 455
BsrDI GCAATG 2 cut(s) 345, 578
BssECI CCNNGG 1 cut(s) 577
BssMI GATC 2 cut(s) 180, 502
BssT1I CCWWGG 1 cut(s) 577
Bst4CI ACNGT 3 cut(s) 33, 137, 560
Bst6I CTCTTC 2 cut(s) 215, 633
BstAPI GCANNNNNTGC 1 cut(s) 395
BstDSI CCRYGG 1 cut(s) 577
BstF5I GGATG 4 cut(s) 10, 400, 587, 688
BstKTI GATC 2 cut(s) 183, 505
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 2 cut(s) 180, 502
BstMWI GCNNNNNNNGC 2 cut(s) 299, 395
BstNSI RCATGY 2 cut(s) 161, 488
BstSFI CTRYAG 1 cut(s) 121
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 643
BstX2I RGATCY 1 cut(s) 180
BstXI CCANNNNNNTGG 2 cut(s) 584, 679
BstYI RGATCY 1 cut(s) 180
BtgI CCRYGG 1 cut(s) 577
BtsCI GGATG 4 cut(s) 10, 400, 587, 688
BtsIMutI CAGTG 1 cut(s) 142
BveI ACCTGC 1 cut(s) 649
Csp6I GTAC 2 cut(s) 211, 330
CviAII CATG 7 cut(s) 150, 158, 326, 485, 578, 605, 632
CviJI RGCY 8 cut(s) 44, 65, 72, 145, 236, 293, 368, 376
CviKI_1 RGCY 8 cut(s) 44, 65, 72, 145, 236, 293, 368, 376
CviQI GTAC 2 cut(s) 211, 330
DpnI GATC 2 cut(s) 182, 504
DpnII GATC 2 cut(s) 180, 502
Eam1104I CTCTTC 2 cut(s) 215, 633
EarI CTCTTC 2 cut(s) 215, 633
Eco130I CCWWGG 1 cut(s) 577
Eco24I GRGCYC 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 455
EcoT14I CCWWGG 1 cut(s) 577
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 577
FaeI CATG 7 cut(s) 153, 161, 329, 488, 581, 608, 635
FalI AAGNNNNNCTT 4 cut(s) 49, 81, 282, 314
FatI CATG 7 cut(s) 149, 157, 325, 484, 577, 604, 631
FauNDI CATATG 1 cut(s) 334
Fnu4HI GCNGC 1 cut(s) 237
FokI GGATG 4 cut(s) 17, 407, 594, 695
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 1 cut(s) 237
FspBI CTAG 1 cut(s) 675
GluI GCNGC 1 cut(s) 237
GsaI CCCAGC 1 cut(s) 376
Hin1II CATG 7 cut(s) 153, 161, 329, 488, 581, 608, 635
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 2 cut(s) 47, 662
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 1 cut(s) 440
Hpy188III TCNNGA 2 cut(s) 57, 217
Hpy8I GTNNAC 1 cut(s) 440
HpyAV CCTTC 2 cut(s) 134, 525
HpyCH4III ACNGT 3 cut(s) 33, 137, 560
HpyCH4V TGCA 4 cut(s) 239, 302, 338, 449
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 395
Hsp92II CATG 7 cut(s) 153, 161, 329, 488, 581, 608, 635
Kzo9I GATC 2 cut(s) 180, 502
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 4 cut(s) 335, 386, 513, 654
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 2 cut(s) 250, 385
MaeI CTAG 1 cut(s) 675
MaeIII GTNAC 2 cut(s) 25, 600
MalI GATC 2 cut(s) 182, 504
MboI GATC 2 cut(s) 180, 502
MboII GAAGA 4 cut(s) 232, 550, 620, 648
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 147
MluCI AATT 4 cut(s) 51, 197, 423, 616
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 647
MnlI CCTC 4 cut(s) 7, 300, 358, 679
MseI TTAA 5 cut(s) 177, 414, 422, 492, 546
MslI CAYNNNNRTG 2 cut(s) 582, 677
MwoI GCNNNNNNNGC 2 cut(s) 299, 395
NcoI CCATGG 1 cut(s) 577
NdeI CATATG 1 cut(s) 334
NdeII GATC 2 cut(s) 180, 502
NlaIII CATG 7 cut(s) 153, 161, 329, 488, 581, 608, 635
NlaIV GGNNCC 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 600
NspI RCATGY 2 cut(s) 161, 488
PfeI GAWTC 1 cut(s) 662
PkrI GCNGC 1 cut(s) 238
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PshBI ATTAAT 1 cut(s) 422
PspFI CCCAGC 1 cut(s) 372
PspN4I GGNNCC 1 cut(s) 146
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 2 cut(s) 212, 331
RsaNI GTAC 2 cut(s) 211, 330
RseI CAYNNNNRTG 2 cut(s) 582, 677
SaqAI TTAA 5 cut(s) 177, 414, 422, 492, 546
SatI GCNGC 1 cut(s) 237
Sau3AI GATC 2 cut(s) 180, 502
SchI GAGTC 1 cut(s) 41
SduI GDGCHC 1 cut(s) 147
SfaNI GCATC 2 cut(s) 250, 385
SfcI CTRYAG 1 cut(s) 121
SmiMI CAYNNNNRTG 2 cut(s) 582, 677
SpeI ACTAGT 1 cut(s) 674
Sse9I AATT 4 cut(s) 51, 197, 423, 616
SspI AATATT 1 cut(s) 412
SspMI CTAG 1 cut(s) 675
StyI CCWWGG 1 cut(s) 577
TaaI ACNGT 3 cut(s) 33, 137, 560
TasI AATT 4 cut(s) 51, 197, 423, 616
TatI WGTACW 1 cut(s) 210
TfiI GAWTC 1 cut(s) 662
Tru1I TTAA 5 cut(s) 177, 414, 422, 492, 546
Tru9I TTAA 5 cut(s) 177, 414, 422, 492, 546
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 600
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 1 cut(s) 600
TspDTI ATGAA 4 cut(s) 447, 510, 620, 687
TspRI CASTG 1 cut(s) 142
VspI ATTAAT 1 cut(s) 422
XceI RCATGY 2 cut(s) 161, 488
XspI CTAG 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.