Rmu_sc0006326.1_g000034

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006326.1
OG0000164
Physical Location & Seq
Reverse (-)
105087 .. 105893
807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006326.1_g000034.1.cds

Sequence Viewer

Length: 807 bp
atgatcattaccgaccaagatcctgctatgactaaagccatttcagaagcactcccacaaacatttcatagatattgcagttggcacattcttaataaattttctgagaagctagatgcgattaaatatcgggattcctaccaagaatttcatagctgtatatggaattcaagtaatagagaggagtttgactccagatggattgaaattattgagaagagtgggttgagtgataacaagtggctggagtcgatatacgaaattcgttcaacatggataccagcatatgtcaatcatgttttctcagatggaatgtcaagtagtcaaagagcagagagtcaacattctttcttcaagaattatgtttctaagtggaattcattggtggaatttatggttcattttaagaggggacttcttcaccaacaacattatgagttagaggagaatcatattaatattgatgagaaggcaaaaactgtcatgtcccttggcataaaagatcatatggccaaggtttatacacgtaaactgttttatgaagttcaagaacagttgagagagagcttcaaatataaacttgaacttgtgtttgaaaatgtcactcaagaacaatttaaggttatacgaaagaacattaatacttgtaagtctcgtgaacttacttatgaaaagaaatctgattttgcatcatgcagctgtagaatgtttgacagtcaaggtttcccatgtcggcatgttttggcatgtttgattaagatccaagatgttgataaattgcctattcagtacatcttgaagagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

268

Amino Acids

32.05

Weight (kDa)

8.08

Isoelectric Point (pI)

59.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 14, 754
AcoI YGGCCR 1 cut(s) 510
AcsI RAATTY 6 cut(s) 98, 146, 166, 261, 376, 389
AfaI GTAC 1 cut(s) 791
AflIII ACRYGT 1 cut(s) 524
AgsI TTSAA 9 cut(s) 171, 206, 270, 355, 548, 571, 584, 596, 799
AluBI AGCT 4 cut(s) 112, 156, 567, 699
AluI AGCT 4 cut(s) 112, 156, 567, 699
Alw26I GTCTC 1 cut(s) 657
AlwI GGATC 2 cut(s) 14, 754
AoxI GGCC 1 cut(s) 510
ApeKI GCWGC 1 cut(s) 696
ApoI RAATTY 6 cut(s) 98, 146, 166, 261, 376, 389
AseI ATTAAT 2 cut(s) 456, 639
AsuHPI GGTGA 1 cut(s) 413
BalI TGGCCA 1 cut(s) 512
BauI CACGAG 1 cut(s) 654
BbvI GCAGC 1 cut(s) 708
BccI CCATC 2 cut(s) 192, 302
BciVI GTATCC 1 cut(s) 270
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 657
BfaI CTAG 1 cut(s) 113
BfmI CTRYAG 1 cut(s) 700
BfuI GTATCC 1 cut(s) 270
BisI GCNGC 1 cut(s) 697
BlsI GCNGC 1 cut(s) 698
BmsI GCATC 2 cut(s) 106, 698
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpmI CTGGAG 2 cut(s) 178, 266
BpuEI CTTGAG 1 cut(s) 591
BsaAI YACGTR 1 cut(s) 527
BsaBI GATNNNNATC 1 cut(s) 758
BsaJI CCNNGG 2 cut(s) 490, 513
Bse8I GATNNNNATC 1 cut(s) 758
BseDI CCNNGG 2 cut(s) 490, 513
BseJI GATNNNNATC 1 cut(s) 758
BseMII CTCAG 2 cut(s) 96, 318
BseRI GAGGAG 2 cut(s) 197, 458
BseXI GCAGC 1 cut(s) 708
BshFI GGCC 1 cut(s) 512
BslFI GGGAC 2 cut(s) 426, 472
BsmAI GTCTC 1 cut(s) 657
BsmFI GGGAC 2 cut(s) 426, 472
BsnI GGCC 1 cut(s) 512
Bsp143I GATC 4 cut(s) 3, 19, 502, 759
BspANI GGCC 1 cut(s) 512
BspCNI CTCAG 2 cut(s) 97, 317
BspPI GGATC 2 cut(s) 14, 754
BssECI CCNNGG 2 cut(s) 490, 513
BssMI GATC 4 cut(s) 3, 19, 502, 759
BssSI CACGAG 1 cut(s) 654
BssT1I CCWWGG 2 cut(s) 490, 513
Bst2BI CACGAG 1 cut(s) 654
Bst4CI ACNGT 4 cut(s) 481, 534, 555, 716
Bst6I CTCTTC 2 cut(s) 212, 794
BstBAI YACGTR 1 cut(s) 527
BstDEI CTNAG 3 cut(s) 105, 304, 369
BstKTI GATC 4 cut(s) 6, 22, 505, 762
BstMAI GTCTC 1 cut(s) 657
BstMBI GATC 4 cut(s) 3, 19, 502, 759
BstNSI RCATGY 2 cut(s) 740, 750
BstSFI CTRYAG 1 cut(s) 700
BstV1I GCAGC 1 cut(s) 708
BstX2I RGATCY 2 cut(s) 19, 759
BstYI RGATCY 2 cut(s) 19, 759
BsuI GTATCC 1 cut(s) 270
BsuRI GGCC 1 cut(s) 512
Csp6I GTAC 1 cut(s) 790
CviAII CATG 7 cut(s) 273, 296, 484, 693, 729, 737, 747
CviJI RGCY 7 cut(s) 38, 112, 156, 244, 512, 567, 699
CviKI_1 RGCY 7 cut(s) 38, 112, 156, 244, 512, 567, 699
CviQI GTAC 1 cut(s) 790
DdeI CTNAG 3 cut(s) 105, 304, 369
DpnI GATC 4 cut(s) 5, 21, 504, 761
DpnII GATC 4 cut(s) 3, 19, 502, 759
EaeI YGGCCR 1 cut(s) 510
Eam1104I CTCTTC 2 cut(s) 212, 794
EarI CTCTTC 2 cut(s) 212, 794
Eco130I CCWWGG 2 cut(s) 490, 513
EcoRI GAATTC 2 cut(s) 166, 376
EcoT14I CCWWGG 2 cut(s) 490, 513
ErhI CCWWGG 2 cut(s) 490, 513
FaeI CATG 7 cut(s) 276, 299, 487, 696, 732, 740, 750
FaqI GGGAC 2 cut(s) 426, 472
FatI CATG 7 cut(s) 272, 295, 483, 692, 728, 736, 746
FauNDI CATATG 2 cut(s) 286, 507
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 697
Fsp4HI GCNGC 1 cut(s) 697
FspBI CTAG 1 cut(s) 113
GluI GCNGC 1 cut(s) 697
GsuI CTGGAG 2 cut(s) 178, 266
HaeIII GGCC 1 cut(s) 512
Hin1II CATG 7 cut(s) 276, 299, 487, 696, 732, 740, 750
HincII GTYRAC 1 cut(s) 341
HindII GTYRAC 1 cut(s) 341
HinfI GANTC 5 cut(s) 134, 191, 248, 337, 448
HphI GGTGA 1 cut(s) 413
Hpy166II GTNNAC 3 cut(s) 341, 530, 659
Hpy188I TCNGA 4 cut(s) 46, 106, 307, 682
Hpy188III TCNNGA 7 cut(s) 131, 195, 355, 548, 608, 656, 796
Hpy8I GTNNAC 3 cut(s) 341, 530, 659
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 4 cut(s) 481, 534, 555, 716
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 3 cut(s) 78, 689, 696
HpyF3I CTNAG 3 cut(s) 105, 304, 369
HpySE526I ACGT 1 cut(s) 526
Hsp92II CATG 7 cut(s) 276, 299, 487, 696, 732, 740, 750
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 19, 502, 759
LpnPI CCDG 4 cut(s) 36, 208, 230, 294
Lsp1109I GCAGC 1 cut(s) 708
LweI GCATC 2 cut(s) 106, 698
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 1 cut(s) 601
MalI GATC 4 cut(s) 5, 21, 504, 761
MboI GATC 4 cut(s) 3, 19, 502, 759
MboII GAAGA 3 cut(s) 229, 343, 410
MflI RGATCY 2 cut(s) 19, 759
MlsI TGGCCA 1 cut(s) 512
MluNI TGGCCA 1 cut(s) 512
MlyI GAGTC 3 cut(s) 185, 257, 346
MnlI CCTC 3 cut(s) 175, 402, 436
Mox20I TGGCCA 1 cut(s) 512
MscI TGGCCA 1 cut(s) 512
MseI TTAA 7 cut(s) 93, 123, 405, 456, 618, 639, 756
Msp20I TGGCCA 1 cut(s) 512
MspA1I CMGCKG 1 cut(s) 699
NdeI CATATG 2 cut(s) 286, 507
NdeII GATC 4 cut(s) 3, 19, 502, 759
NlaIII CATG 7 cut(s) 276, 299, 487, 696, 732, 740, 750
NmuCI GTSAC 1 cut(s) 601
NspI RCATGY 2 cut(s) 740, 750
PfeI GAWTC 2 cut(s) 134, 448
PkrI GCNGC 1 cut(s) 698
PleI GAGTC 3 cut(s) 185, 256, 345
PpsI GAGTC 3 cut(s) 185, 256, 345
Ppu21I YACGTR 1 cut(s) 527
PshBI ATTAAT 2 cut(s) 456, 639
PsuI RGATCY 2 cut(s) 19, 759
PvuII CAGCTG 1 cut(s) 699
RsaI GTAC 1 cut(s) 791
RsaNI GTAC 1 cut(s) 790
SaqAI TTAA 7 cut(s) 93, 123, 405, 456, 618, 639, 756
SatI GCNGC 1 cut(s) 697
Sau3AI GATC 4 cut(s) 3, 19, 502, 759
SchI GAGTC 3 cut(s) 185, 257, 346
SetI ASST 8 cut(s) 114, 158, 519, 529, 569, 624, 701, 724
SfaNI GCATC 2 cut(s) 106, 698
SfcI CTRYAG 1 cut(s) 700
SmlI CTYRAG 1 cut(s) 606
SmoI CTYRAG 1 cut(s) 606
SspI AATATT 1 cut(s) 460
SspMI CTAG 1 cut(s) 113
StyI CCWWGG 2 cut(s) 490, 513
TaaI ACNGT 4 cut(s) 481, 534, 555, 716
TaiI ACGT 1 cut(s) 529
TaqI TCGA 1 cut(s) 251
TatI WGTACW 1 cut(s) 789
TfiI GAWTC 2 cut(s) 134, 448
Tru1I TTAA 7 cut(s) 93, 123, 405, 456, 618, 639, 756
Tru9I TTAA 7 cut(s) 93, 123, 405, 456, 618, 639, 756
TseFI GTSAC 1 cut(s) 601
TseI GCWGC 1 cut(s) 696
Tsp45I GTSAC 1 cut(s) 601
TspDTI ATGAA 6 cut(s) 56, 140, 369, 389, 555, 684
VspI ATTAAT 2 cut(s) 456, 639
XapI RAATTY 6 cut(s) 98, 146, 166, 261, 376, 389
XceI RCATGY 2 cut(s) 740, 750
XspI CTAG 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.