Rroxscaffold_2G00119980

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000164
Physical Location & Seq
Forward (+)
52068206 .. 52069065
860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119980.1

Sequence Viewer

Length: 774 bp
ATGCCAATAGAGGTCCAAATGTCTCAATTGTATACCAAAAAATACTTTCAGTACTTTCAAGCTCAGCTTCATGATGGTAATGGTTATATCGTAAATGCCGTAATGGAAGATGACAATCGTTGTGTTTACAAGACTGAAAGGGTGTTTGCTCAAAACTTAAGAATGCGGACGCTTGTACATGATAAGGTATCAAACATAGTGACATGCAGTTGTAAAATGTTTAAATTTGAAGGTATTCCTTGCAGGCATATTTTGGCTTTGTTACGACTAAAACAGATTATGGAATTGCCAAAGGAATATATTCTGCGAAGATGGACAAGGTTTTCAAGAATTTGTAGAGAAAGGTGTCAAGGGCAAGATGGTGCAGATAATTCATTAATAATGAGACACAACGGTATGTTCAAAATTGCATCCAATTTAATTGATGAGGCGGCAATTTCACCAGAGGGGACTGAACTTGTGCAAAAGGCATTTGAAGGACTTATGGAGCGAATTAAGAAACTAAATCTTTCTGTTGGGCAAGCTTCTATCAACAATTCCTTAATAGGAACTTCTGAAGAGAATCGTTTCCTAGATCCTTCTCAAGTGAAGACTAAAGGTAGTGGAAAATGCATAACAGCATGGAGAGACAGGAAAACAAAAGTTAGACATTGTTCTAAATGTCAAAGTACTAAACATACTAAAAAGACATGCACATTTGATAGGGTCGAGATTGTGGAAAATGAAGTAGACAAAGCATTAGGTGAACAAGATTACTTGGTTGATGAGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

257

Amino Acids

29.74

Weight (kDa)

9.03

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 66 - 89 1.3e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 32, 729
AciI CCGC 2 cut(s) 166, 431
AclWI GGATC 1 cut(s) 569
AcsI RAATTY 2 cut(s) 224, 330
AcuI CTGAAG 1 cut(s) 576
AfaI GTAC 3 cut(s) 53, 177, 670
AflII CTTAAG 1 cut(s) 157
AgsI TTSAA 5 cut(s) 59, 230, 327, 403, 476
AluBI AGCT 4 cut(s) 62, 67, 524, 769
AluI AGCT 4 cut(s) 62, 67, 524, 769
Alw26I GTCTC 3 cut(s) 27, 379, 621
AlwI GGATC 1 cut(s) 569
ApoI RAATTY 2 cut(s) 224, 330
AseI ATTAAT 1 cut(s) 377
Asp700I GAANNNNTTC 3 cut(s) 234, 300, 566
AspS9I GGNCC 1 cut(s) 13
AsuHPI GGTGA 2 cut(s) 432, 755
AvaII GGWCC 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 596
BccI CCATC 3 cut(s) 68, 306, 353
BceAI ACGGC 1 cut(s) 83
BcoDI GTCTC 3 cut(s) 27, 379, 621
BfaI CTAG 1 cut(s) 572
BfrI CTTAAG 1 cut(s) 157
BisI GCNGC 1 cut(s) 432
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 433
BmcAI AGTACT 2 cut(s) 53, 670
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 13
BmsI GCATC 1 cut(s) 419
BpiI GAAGAC 1 cut(s) 596
Bpu1102I GCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 567
BsaBI GATNNNNATC 1 cut(s) 114
Bse8I GATNNNNATC 1 cut(s) 114
BseGI GGATG 1 cut(s) 410
BseJI GATNNNNATC 1 cut(s) 114
BseMII CTCAG 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 384
BslFI GGGAC 1 cut(s) 463
BsmAI GTCTC 3 cut(s) 27, 379, 621
BsmFI GGGAC 1 cut(s) 463
BsmI GAATGC 1 cut(s) 168
Bsp1407I TGTACA 1 cut(s) 175
Bsp143I GATC 1 cut(s) 574
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 2 cut(s) 166, 431
BspCNI CTCAG 1 cut(s) 76
BspHI TCATGA 1 cut(s) 70
BspPI GGATC 1 cut(s) 569
BspTI CTTAAG 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 175
BssMI GATC 1 cut(s) 574
BssNAI GTATAC 1 cut(s) 33
Bst1107I GTATAC 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 395
Bst6I CTCTTC 1 cut(s) 552
BstAFI CTTAAG 1 cut(s) 157
BstAUI TGTACA 1 cut(s) 175
BstC8I GCNNGC 2 cut(s) 245, 522
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 410
BstKTI GATC 1 cut(s) 577
BstMAI GTCTC 3 cut(s) 27, 379, 621
BstMBI GATC 1 cut(s) 574
BstNSI RCATGY 2 cut(s) 207, 693
BstV2I GAAGAC 1 cut(s) 596
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BstZ17I GTATAC 1 cut(s) 33
BtsCI GGATG 1 cut(s) 410
Cac8I GCNNGC 2 cut(s) 245, 522
CciI TCATGA 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 13
CseI GACGC 1 cut(s) 178
Csp6I GTAC 3 cut(s) 52, 176, 669
CviAII CATG 5 cut(s) 71, 179, 204, 621, 690
CviJI RGCY 5 cut(s) 62, 67, 257, 524, 769
CviKI_1 RGCY 5 cut(s) 62, 67, 257, 524, 769
CviQI GTAC 3 cut(s) 52, 176, 669
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 576
DpnII GATC 1 cut(s) 574
DraI TTTAAA 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Eco47I GGWCC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 576
EcoT22I ATGCAT 1 cut(s) 614
FaeI CATG 5 cut(s) 74, 182, 207, 624, 693
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 1 cut(s) 463
FatI CATG 5 cut(s) 70, 178, 203, 620, 689
FblI GTMKAC 2 cut(s) 32, 729
Fnu4HI GCNGC 1 cut(s) 432
FokI GGATG 1 cut(s) 397
Fsp4HI GCNGC 1 cut(s) 432
FspBI CTAG 1 cut(s) 572
GluI GCNGC 1 cut(s) 432
HgaI GACGC 1 cut(s) 178
Hin1II CATG 5 cut(s) 74, 182, 207, 624, 693
HindIII AAGCTT 1 cut(s) 522
HinfI GANTC 1 cut(s) 562
HphI GGTGA 2 cut(s) 432, 755
Hpy166II GTNNAC 4 cut(s) 33, 127, 730, 746
Hpy188I TCNGA 1 cut(s) 556
Hpy188III TCNNGA 3 cut(s) 71, 327, 709
Hpy8I GTNNAC 4 cut(s) 33, 127, 730, 746
HpyAV CCTTC 3 cut(s) 224, 470, 588
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4V TGCA 7 cut(s) 207, 243, 365, 410, 463, 612, 693
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 5 cut(s) 74, 182, 207, 624, 693
Kzo9I GATC 1 cut(s) 574
LmnI GCTCC 1 cut(s) 487
LpnPI CCDG 3 cut(s) 229, 456, 616
LweI GCATC 1 cut(s) 419
MaeI CTAG 1 cut(s) 572
MaeIII GTNAC 2 cut(s) 199, 261
MalI GATC 1 cut(s) 576
MboI GATC 1 cut(s) 574
MboII GAAGA 4 cut(s) 119, 321, 569, 601
MfeI CAATTG 1 cut(s) 26
MflI RGATCY 1 cut(s) 574
MnlI CCTC 3 cut(s) 4, 421, 439
Mph1103I ATGCAT 1 cut(s) 614
MroXI GAANNNNTTC 3 cut(s) 234, 300, 566
MseI TTAA 6 cut(s) 158, 222, 377, 419, 495, 542
MspCI CTTAAG 1 cut(s) 157
MunI CAATTG 1 cut(s) 26
Mva1269I GAATGC 1 cut(s) 168
NdeII GATC 1 cut(s) 574
NlaIII CATG 5 cut(s) 74, 182, 207, 624, 693
NmuCI GTSAC 1 cut(s) 199
NsiI ATGCAT 1 cut(s) 614
NspI RCATGY 2 cut(s) 207, 693
PagI TCATGA 1 cut(s) 70
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 168
PdmI GAANNNNTTC 3 cut(s) 234, 300, 566
PfeI GAWTC 1 cut(s) 562
PkrI GCNGC 1 cut(s) 433
PshBI ATTAAT 1 cut(s) 377
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 1 cut(s) 574
RsaI GTAC 3 cut(s) 53, 177, 670
RsaNI GTAC 3 cut(s) 52, 176, 669
SaqAI TTAA 6 cut(s) 158, 222, 377, 419, 495, 542
SatI GCNGC 1 cut(s) 432
Sau3AI GATC 1 cut(s) 574
Sau96I GGNCC 1 cut(s) 13
ScaI AGTACT 2 cut(s) 53, 670
SfaNI GCATC 1 cut(s) 419
SinI GGWCC 1 cut(s) 13
SmlI CTYRAG 2 cut(s) 157, 582
SmoI CTYRAG 2 cut(s) 157, 582
SsiI CCGC 2 cut(s) 166, 431
SspMI CTAG 1 cut(s) 572
TaaI ACNGT 1 cut(s) 395
TaqI TCGA 1 cut(s) 708
TatI WGTACW 3 cut(s) 51, 175, 668
TauI GCSGC 1 cut(s) 434
TfiI GAWTC 1 cut(s) 562
Tru1I TTAA 6 cut(s) 158, 222, 377, 419, 495, 542
Tru9I TTAA 6 cut(s) 158, 222, 377, 419, 495, 542
TseFI GTSAC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 3 cut(s) 59, 363, 738
Vha464I CTTAAG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 13
VspI ATTAAT 1 cut(s) 377
XapI RAATTY 2 cut(s) 224, 330
XceI RCATGY 2 cut(s) 207, 693
XmiI GTMKAC 2 cut(s) 32, 729
XmnI GAANNNNTTC 3 cut(s) 234, 300, 566
XspI CTAG 1 cut(s) 572
ZrmI AGTACT 2 cut(s) 53, 670
Zsp2I ATGCAT 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.