Rorug01G0198900

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
27832678 .. 27833662
985 bp
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UTR
Exon/CDS
Intron
Rorug01G0198900.1

Sequence Viewer

Length: 705 bp
ATGAGCTGTCTTGTCTTTAGCTACAAAAGAAGAAAAGAAGATGCGCTTAAAGAGGCTGTTTATGATGCTGAGGACTTGCTGGAGGAGATCAAGACAGAAGTGTTGAAGGGGAAGCTCGAAGCCGAACCAGGGAGTAGCACAAGTAAGGTACGAAACCTCTTCCCTTCTTCTGACGCAACACTAAACACCAGGATAGAGGAAATTCTTGTGAGACTAGAGTTCATTGCAAAACAAAAAGATGTCCTTGATTTAAAAGTAGGTGCTCCACAGAGAGTGGCACAGGCTCCGCCTTCAACTTCTTTGGTGGAAGACTCCGGTGTATATGGAAGAGACGAGGAGAAGGAGAGATTGATTAGATTATTGCTATCGGACGATGTGACTGGCAATAAGATAAGTGTGATGCCAATTGTGGGCATGGGTGGGATCGGAAAGACCACTCTTGCTCAGCTCATATACAATGATGTTAGAGTGAAACAACAGTTTAACCTTCATGCATGGGTTTGTGTTTCGGACGAATTTAACATTCTTAGAATAACACAAACAATCTATGAGTGTGTTGTTTCGAGGACTTGTGATATTAGGAACCTAGATTTGCTTCAATCTGAACTGAAGGAGGTCTTGACAGGGAAGAAGTTCTTATTTGTTCTTGATGATGTGTGGAACCAAAATTATATGCATTGGGATTTTTTTAAGGCGTCCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

234

Amino Acids

26.62

Weight (kDa)

5.29

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 111 - 228 3e-26 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 287
AclWI GGATC 1 cut(s) 431
AcsI RAATTY 2 cut(s) 201, 515
AcuI CTGAAG 1 cut(s) 629
AcyI GRCGYC 1 cut(s) 695
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 2 cut(s) 129, 410
AgsI TTSAA 3 cut(s) 106, 294, 599
AjnI CCWGG 2 cut(s) 127, 188
AluBI AGCT 4 cut(s) 6, 21, 115, 448
AluI AGCT 4 cut(s) 6, 21, 115, 448
Alw21I GWGCWC 1 cut(s) 265
Alw26I GTCTC 2 cut(s) 205, 324
AlwI GGATC 1 cut(s) 431
ApoI RAATTY 2 cut(s) 201, 515
Asp700I GAANNNNTTC 1 cut(s) 632
AspLEI GCGC 1 cut(s) 46
BbsI GAAGAC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 265
BbvCI CCTCAGC 1 cut(s) 69
BciT130I CCWGG 2 cut(s) 129, 190
BcoDI GTCTC 2 cut(s) 205, 324
BfaI CTAG 2 cut(s) 215, 587
BlpI GCTNAGC 1 cut(s) 444
Bme1390I CCNGG 2 cut(s) 129, 190
BmiI GGNNCC 3 cut(s) 285, 584, 662
BmrFI CCNGG 2 cut(s) 129, 190
BmsI GCATC 3 cut(s) 31, 55, 390
BpiI GAAGAC 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 695
BsaJI CCNNGG 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 2 cut(s) 129, 410
Bse1I ACTGG 1 cut(s) 385
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 2 cut(s) 129, 190
BseDI CCNNGG 1 cut(s) 128
BseLI CCNNNNNNNGG 2 cut(s) 129, 410
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 2 cut(s) 60, 458
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 2 cut(s) 98, 350
BsiHKAI GWGCWC 1 cut(s) 265
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 1 cut(s) 682
BslI CCNNNNNNNGG 2 cut(s) 129, 410
BsmAI GTCTC 2 cut(s) 205, 324
BsmBI CGTCTC 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 682
Bsp1286I GDGCHC 1 cut(s) 265
Bsp143I GATC 2 cut(s) 87, 423
Bsp1720I GCTNAGC 1 cut(s) 444
BspACI CCGC 1 cut(s) 287
BspCNI CTCAG 2 cut(s) 61, 457
BspLI GGNNCC 3 cut(s) 285, 584, 662
BspPI GGATC 1 cut(s) 431
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 1 cut(s) 385
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 2 cut(s) 87, 423
BssNI GRCGYC 1 cut(s) 695
Bst2UI CCWGG 2 cut(s) 129, 190
Bst4CI ACNGT 1 cut(s) 480
Bst6I CTCTTC 2 cut(s) 164, 322
BstACI GRCGYC 1 cut(s) 695
BstDEI CTNAG 3 cut(s) 69, 444, 527
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 2 cut(s) 90, 426
BstMAI GTCTC 2 cut(s) 205, 324
BstMBI GATC 2 cut(s) 87, 423
BstNI CCWGG 2 cut(s) 129, 190
BstSCI CCNGG 2 cut(s) 127, 188
BstV2I GAAGAC 1 cut(s) 315
CfoI GCGC 1 cut(s) 46
CseI GACGC 2 cut(s) 182, 684
Csp6I GTAC 1 cut(s) 149
CviAII CATG 3 cut(s) 415, 491, 495
CviJI RGCY 7 cut(s) 6, 21, 56, 115, 122, 284, 448
CviKI_1 RGCY 7 cut(s) 6, 21, 56, 115, 122, 284, 448
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 3 cut(s) 69, 444, 527
DpnI GATC 2 cut(s) 89, 425
DpnII GATC 2 cut(s) 87, 423
DraI TTTAAA 1 cut(s) 252
Eam1104I CTCTTC 2 cut(s) 164, 322
EarI CTCTTC 2 cut(s) 164, 322
EciI GGCGGA 1 cut(s) 276
Eco57I CTGAAG 1 cut(s) 629
EcoRII CCWGG 2 cut(s) 127, 188
EcoT22I ATGCAT 2 cut(s) 496, 678
Esp3I CGTCTC 1 cut(s) 324
FaeI CATG 3 cut(s) 418, 494, 498
FalI AAGNNNNNCTT 8 cut(s) 30, 62, 228, 260, 602, 634, 620, 652
FaqI GGGAC 1 cut(s) 682
FatI CATG 3 cut(s) 414, 490, 494
FspBI CTAG 2 cut(s) 215, 587
GlaI GCGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 101
HapII CCGG 1 cut(s) 315
HgaI GACGC 2 cut(s) 182, 684
HhaI GCGC 1 cut(s) 46
Hin1I GRCGYC 1 cut(s) 695
Hin1II CATG 3 cut(s) 418, 494, 498
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 1 cut(s) 311
HpaII CCGG 1 cut(s) 315
Hpy188I TCNGA 5 cut(s) 172, 370, 428, 511, 604
Hpy188III TCNNGA 3 cut(s) 91, 619, 647
HpyAV CCTTC 6 cut(s) 100, 174, 300, 334, 497, 604
HpyCH4III ACNGT 1 cut(s) 480
HpyCH4V TGCA 3 cut(s) 227, 494, 676
HpyF3I CTNAG 3 cut(s) 69, 444, 527
Hsp92I GRCGYC 1 cut(s) 695
Hsp92II CATG 3 cut(s) 418, 494, 498
HspAI GCGC 1 cut(s) 44
Kzo9I GATC 2 cut(s) 87, 423
LmnI GCTCC 2 cut(s) 268, 289
LpnPI CCDG 9 cut(s) 65, 114, 141, 175, 202, 266, 328, 366, 609
LweI GCATC 3 cut(s) 31, 55, 390
MaeI CTAG 2 cut(s) 215, 587
MaeIII GTNAC 1 cut(s) 376
MalI GATC 2 cut(s) 89, 425
MboI GATC 2 cut(s) 87, 423
MboII GAAGA 7 cut(s) 42, 50, 151, 159, 320, 339, 640
MfeI CAATTG 1 cut(s) 405
MhlI GDGCHC 1 cut(s) 265
MluCI AATT 4 cut(s) 201, 405, 515, 667
MlyI GAGTC 1 cut(s) 305
MnlI CCTC 8 cut(s) 46, 64, 76, 167, 190, 328, 558, 607
Mph1103I ATGCAT 2 cut(s) 496, 678
MroXI GAANNNNTTC 1 cut(s) 632
MseI TTAA 5 cut(s) 48, 251, 483, 519, 690
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 2 cut(s) 129, 190
MunI CAATTG 1 cut(s) 405
MvaI CCWGG 2 cut(s) 129, 190
NdeII GATC 2 cut(s) 87, 423
NlaIII CATG 3 cut(s) 418, 494, 498
NlaIV GGNNCC 3 cut(s) 285, 584, 662
NmuCI GTSAC 1 cut(s) 376
NsiI ATGCAT 2 cut(s) 496, 678
PdmI GAANNNNTTC 1 cut(s) 632
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
Psp6I CCWGG 2 cut(s) 127, 188
PspGI CCWGG 2 cut(s) 127, 188
PspN4I GGNNCC 3 cut(s) 285, 584, 662
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SaqAI TTAA 5 cut(s) 48, 251, 483, 519, 690
Sau3AI GATC 2 cut(s) 87, 423
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 2 cut(s) 129, 190
SduI GDGCHC 1 cut(s) 265
SfaNI GCATC 3 cut(s) 31, 55, 390
Sse9I AATT 4 cut(s) 201, 405, 515, 667
SsiI CCGC 1 cut(s) 287
SspMI CTAG 2 cut(s) 215, 587
StyD4I CCNGG 2 cut(s) 127, 188
TaaI ACNGT 1 cut(s) 480
TaqI TCGA 2 cut(s) 117, 563
TasI AATT 4 cut(s) 201, 405, 515, 667
Tru1I TTAA 5 cut(s) 48, 251, 483, 519, 690
Tru9I TTAA 5 cut(s) 48, 251, 483, 519, 690
TseFI GTSAC 1 cut(s) 376
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 2 cut(s) 211, 479
XapI RAATTY 2 cut(s) 201, 515
XmnI GAANNNNTTC 1 cut(s) 632
XspI CTAG 2 cut(s) 215, 587
Zsp2I ATGCAT 2 cut(s) 496, 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.