FvH4_2g03921

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000164
Physical Location & Seq
Forward (+)
3107297 .. 3108478
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g03921.t1

Sequence Viewer

Length: 1182 bp
ATGGACTCACAACAGAGTTTCGATGATACTCCTATTTATTGTCCACAAGTGAAGGTTGATCTGATTCCTATAAAGAACCAAGAATTTCAAACACTACAAGATGTTGAGACGTTTTACAAAAGCTATGCAAAAGAAGCAAGGTTTAATGTCAAAAGTTCCGTTACCGAGAAGAAGAATGGCGTGATTGTACGAAAGGAGTATGTGTGCTCTAAAGAAGGAACATCGAAGGTAACAGGAAAGAAAAGAAATCGGAATCAAACAAGAGAAAATTGCAAGGCAAGAATAGCAGTTGTAAGACGTGCCAAGATCGGTAAATATGTTGTCACTATTTTTGTTGAGGATCACAGCCACCCTTTAACTAGCCCACGAAGACAGTATTTGACAAAAATTCACCGTAAGGTTTCTGCAGTTCATAAATCATTATCAAAGCAACTGACTGAAGTCAATGTGCCTACATGTACACAGTTTGACTTTCTTAGAGTAAACTCAAGAGGATTAAAAAACATCGTGTGCTTGCAGCAAGACATTTATAACTACAAAAGGGATTGTCACAAAGAGGTGAAGGGGCATGATGGAGATATGTTGTATGAGTACTTCTTGCATGAGAAAGAAAAAGATCCTTCATTCATTTTCAAAATAGAGGCTGACAACGAGAACAGGATCACTCGTATCTTTTGGGCTGATGCAATTTCTAGACGATCTTACAAGTTTTTTGGTGATGTTGTAATATTTGACACAACTTACAACACCAATACATATTCGTTGATCTTCGCACCTCTGGTAGGAGTAAATAATCATGGACAGACAATAATTTTGGCTTGTGCATTCTTAAACAATGAGACAACTGATTCTTTTACATGGTTCTTTAAAGAATTTTTGAAGGCAATGTCAGGCGATGCTCCGAGGATGATAATTACCGATCAAGATCCAGCAATGACGAAAGCTATCTCTGAAGTACTCCCACAGACATTTCACAGGTATTGTAGCTGGCATATTCTAAATAAATTCTCTAAAAAAATAGACCCAGGAAAATATACTCGTTATTATGATGAATTTCAAGATTGCATATGGAATTCAGAAAATGGAGATGAGTTTGATGCCAGGTGGACAACGATTGTTGAGAGTAGTGGTTTAAGTGATAATGGATGGTTACAAAGTATGTATGATATTCGGTCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

394

Amino Acids

45.86

Weight (kDa)

8.84

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 37 - 120 1.1e-16 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 205 - 323 5.4e-13 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 241 - 334 2.5e-31 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
AclWI GGATC 4 cut(s) 348, 611, 668, 920
AcsI RAATTY 6 cut(s) 83, 387, 872, 1004, 1052, 1072
AcuI CTGAAG 2 cut(s) 459, 972
AfaI GTAC 4 cut(s) 189, 460, 593, 957
AfiI CCNNNNNNNGG 1 cut(s) 782
AflIII ACRYGT 1 cut(s) 455
AgsI TTSAA 4 cut(s) 89, 634, 880, 1058
AjiI CACGTC 1 cut(s) 299
AjnI CCWGG 2 cut(s) 1024, 1100
AluBI AGCT 3 cut(s) 123, 944, 987
AluI AGCT 3 cut(s) 123, 944, 987
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 101, 833
AlwI GGATC 4 cut(s) 348, 611, 668, 920
ApeKI GCWGC 1 cut(s) 517
ApoI RAATTY 6 cut(s) 83, 387, 872, 1004, 1052, 1072
ArsI GACNNNNNNTTYG 2 cut(s) 796, 828
AsuHPI GGTGA 3 cut(s) 383, 571, 728
BarI GAAGNNNNNNTAC 2 cut(s) 578, 610
BbsI GAAGAC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 529
BccI CCATC 2 cut(s) 566, 1140
BciT130I CCWGG 2 cut(s) 1026, 1102
BcoDI GTCTC 2 cut(s) 101, 833
BfaI CTAG 2 cut(s) 360, 693
BfmI CTRYAG 1 cut(s) 405
BisI GCNGC 1 cut(s) 518
BlsI GCNGC 1 cut(s) 519
BmcAI AGTACT 2 cut(s) 593, 957
Bme1390I CCNGG 2 cut(s) 1026, 1102
BmgBI CACGTC 1 cut(s) 299
BmrFI CCNGG 2 cut(s) 1026, 1102
BmsI GCATC 3 cut(s) 673, 886, 1087
BoxI GACNNNNGTC 1 cut(s) 440
BpiI GAAGAC 1 cut(s) 376
BpuEI CTTGAG 1 cut(s) 472
BsaBI GATNNNNATC 1 cut(s) 924
BsaJI CCNNGG 2 cut(s) 902, 1024
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 782
Bse3DI GCAATG 2 cut(s) 891, 939
Bse8I GATNNNNATC 1 cut(s) 924
BseBI CCWGG 2 cut(s) 1026, 1102
BseDI CCNNGG 2 cut(s) 902, 1024
BseGI GGATG 2 cut(s) 912, 1151
BseJI GATNNNNATC 1 cut(s) 924
BseLI CCNNNNNNNGG 1 cut(s) 782
BseMI GCAATG 2 cut(s) 891, 939
BseXI GCAGC 1 cut(s) 529
BsiHKAI GWGCWC 1 cut(s) 209
BslI CCNNNNNNNGG 1 cut(s) 782
BsmAI GTCTC 2 cut(s) 101, 833
BsmBI CGTCTC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 824
Bsp1286I GDGCHC 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 458
Bsp143I GATC 9 cut(s) 58, 306, 340, 616, 660, 698, 765, 919, 925
BspMAI CTGCAG 1 cut(s) 409
BspPI GGATC 4 cut(s) 348, 611, 668, 920
BsrDI GCAATG 2 cut(s) 891, 939
BsrGI TGTACA 1 cut(s) 458
BssECI CCNNGG 2 cut(s) 902, 1024
BssMI GATC 9 cut(s) 58, 306, 340, 616, 660, 698, 765, 919, 925
Bst2UI CCWGG 2 cut(s) 1026, 1102
Bst4CI ACNGT 3 cut(s) 375, 395, 465
BstAUI TGTACA 1 cut(s) 458
BstC8I GCNNGC 2 cut(s) 515, 989
BstDEI CTNAG 1 cut(s) 476
BstENI CCTNNNNNAGG 1 cut(s) 780
BstF5I GGATG 2 cut(s) 912, 1151
BstKTI GATC 9 cut(s) 61, 309, 343, 619, 663, 701, 768, 922, 928
BstMAI GTCTC 2 cut(s) 101, 833
BstMBI GATC 9 cut(s) 58, 306, 340, 616, 660, 698, 765, 919, 925
BstMWI GCNNNNNNNGC 2 cut(s) 134, 284
BstNI CCWGG 2 cut(s) 1026, 1102
BstNSI RCATGY 1 cut(s) 459
BstPAI GACNNNNGTC 1 cut(s) 440
BstSCI CCNGG 2 cut(s) 1024, 1100
BstSFI CTRYAG 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 529
BstV2I GAAGAC 1 cut(s) 376
BstX2I RGATCY 2 cut(s) 616, 925
BstYI RGATCY 2 cut(s) 616, 925
BtgZI GCGATG 1 cut(s) 909
BtrI CACGTC 1 cut(s) 299
BtsCI GGATG 2 cut(s) 912, 1151
Cac8I GCNNGC 2 cut(s) 515, 989
Csp6I GTAC 4 cut(s) 188, 459, 592, 956
CviAII CATG 5 cut(s) 456, 569, 602, 797, 858
CviJI RGCY 8 cut(s) 123, 348, 363, 644, 680, 818, 944, 987
CviKI_1 RGCY 8 cut(s) 123, 348, 363, 644, 680, 818, 944, 987
CviQI GTAC 4 cut(s) 188, 459, 592, 956
DdeI CTNAG 1 cut(s) 476
DpnI GATC 9 cut(s) 60, 308, 342, 618, 662, 700, 767, 921, 927
DpnII GATC 9 cut(s) 58, 306, 340, 616, 660, 698, 765, 919, 925
DraI TTTAAA 1 cut(s) 868
Eco57I CTGAAG 2 cut(s) 459, 972
EcoNI CCTNNNNNAGG 1 cut(s) 780
EcoRI GAATTC 1 cut(s) 1072
EcoRII CCWGG 2 cut(s) 1024, 1100
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 5 cut(s) 459, 572, 605, 800, 861
FatI CATG 5 cut(s) 455, 568, 601, 796, 857
FauNDI CATATG 1 cut(s) 1067
Fnu4HI GCNGC 1 cut(s) 518
FokI GGATG 2 cut(s) 919, 1158
Fsp4HI GCNGC 1 cut(s) 518
FspBI CTAG 2 cut(s) 360, 693
GluI GCNGC 1 cut(s) 518
Hin1II CATG 5 cut(s) 459, 572, 605, 800, 861
HinfI GANTC 4 cut(s) 5, 64, 253, 848
HphI GGTGA 3 cut(s) 383, 571, 728
Hpy166II GTNNAC 4 cut(s) 44, 461, 484, 1107
Hpy188I TCNGA 5 cut(s) 63, 252, 903, 952, 1078
Hpy188III TCNNGA 4 cut(s) 489, 693, 923, 1058
Hpy8I GTNNAC 4 cut(s) 44, 461, 484, 1107
HpyAV CCTTC 6 cut(s) 46, 209, 220, 556, 630, 874
HpyCH4III ACNGT 3 cut(s) 375, 395, 465
HpyCH4IV ACGT 2 cut(s) 110, 298
HpyCH4V TGCA 8 cut(s) 128, 273, 407, 517, 601, 686, 824, 1065
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 284
HpyF3I CTNAG 1 cut(s) 476
HpySE526I ACGT 2 cut(s) 110, 298
Hsp92II CATG 5 cut(s) 459, 572, 605, 800, 861
Kzo9I GATC 9 cut(s) 58, 306, 340, 616, 660, 698, 765, 919, 925
LmnI GCTCC 1 cut(s) 904
Lsp1109I GCAGC 1 cut(s) 529
LweI GCATC 3 cut(s) 673, 886, 1087
MaeI CTAG 2 cut(s) 360, 693
MaeII ACGT 2 cut(s) 110, 298
MaeIII GTNAC 5 cut(s) 160, 229, 322, 548, 1149
MalI GATC 9 cut(s) 60, 308, 342, 618, 662, 700, 767, 921, 927
MboI GATC 9 cut(s) 58, 306, 340, 616, 660, 698, 765, 919, 925
MboII GAAGA 4 cut(s) 181, 184, 381, 760
MflI RGATCY 2 cut(s) 616, 925
MhlI GDGCHC 1 cut(s) 209
MnlI CCTC 6 cut(s) 331, 485, 550, 634, 786, 897
MseI TTAA 6 cut(s) 144, 356, 497, 830, 867, 1133
MspR9I CCNGG 2 cut(s) 1026, 1102
Mva1269I GAATGC 1 cut(s) 824
MvaI CCWGG 2 cut(s) 1026, 1102
MwoI GCNNNNNNNGC 2 cut(s) 134, 284
NdeI CATATG 1 cut(s) 1067
NdeII GATC 9 cut(s) 58, 306, 340, 616, 660, 698, 765, 919, 925
NlaIII CATG 5 cut(s) 459, 572, 605, 800, 861
NmuCI GTSAC 2 cut(s) 322, 548
NspI RCATGY 1 cut(s) 459
PciI ACATGT 1 cut(s) 455
PctI GAATGC 1 cut(s) 824
PfeI GAWTC 3 cut(s) 64, 253, 848
PkrI GCNGC 1 cut(s) 519
PscI ACATGT 1 cut(s) 455
PshAI GACNNNNGTC 1 cut(s) 440
PsiI TTATAA 1 cut(s) 531
Psp6I CCWGG 2 cut(s) 1024, 1100
PspGI CCWGG 2 cut(s) 1024, 1100
PstI CTGCAG 1 cut(s) 409
PsuI RGATCY 2 cut(s) 616, 925
RsaI GTAC 4 cut(s) 189, 460, 593, 957
RsaNI GTAC 4 cut(s) 188, 459, 592, 956
SaqAI TTAA 6 cut(s) 144, 356, 497, 830, 867, 1133
SatI GCNGC 1 cut(s) 518
Sau3AI GATC 9 cut(s) 58, 306, 340, 616, 660, 698, 765, 919, 925
ScaI AGTACT 2 cut(s) 593, 957
ScrFI CCNGG 2 cut(s) 1026, 1102
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 3 cut(s) 673, 886, 1087
SfcI CTRYAG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
SspI AATATT 1 cut(s) 729
SspMI CTAG 2 cut(s) 360, 693
StyD4I CCNGG 2 cut(s) 1024, 1100
TaaI ACNGT 3 cut(s) 375, 395, 465
TaiI ACGT 2 cut(s) 113, 301
TaqI TCGA 2 cut(s) 21, 224
TaqII GACCGA 1 cut(s) 1161
TatI WGTACW 3 cut(s) 458, 591, 955
TfiI GAWTC 3 cut(s) 64, 253, 848
Tru1I TTAA 6 cut(s) 144, 356, 497, 830, 867, 1133
Tru9I TTAA 6 cut(s) 144, 356, 497, 830, 867, 1133
TseFI GTSAC 2 cut(s) 322, 548
TseI GCWGC 1 cut(s) 517
Tsp45I GTSAC 2 cut(s) 322, 548
TspDTI ATGAA 4 cut(s) 401, 612, 616, 1065
TspGWI ACGGA 1 cut(s) 148
XagI CCTNNNNNAGG 1 cut(s) 780
XapI RAATTY 6 cut(s) 83, 387, 872, 1004, 1052, 1072
XbaI TCTAGA 1 cut(s) 692
XceI RCATGY 1 cut(s) 459
XspI CTAG 2 cut(s) 360, 693
ZrmI AGTACT 2 cut(s) 593, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.