Rmu_sc0003226.1_g000029

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003226.1
OG0000164
Physical Location & Seq
Forward (+)
138504 .. 139457
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003226.1_g000029.1.cds

Sequence Viewer

Length: 954 bp
atggagtcagatgaggaaaacagagtaacacggtgcttttgggataactcaatttcaagacgaggttacagcttttatggagatgtagttatctttgatactacatgcaacacaaattggtatggaatgatttttgcaccattcactggtactgttaacaatcatgggcagacaatcatctttgcttgtgcattcttgaatgatgagacagccgatacttttgtttggttattcaaggaatttctaaatgctatgccaggagatgcaccaaaaaatgcccccaagatggtcattacaaaccaagatcctgctatgactaaagccatttcagaagcactcccacaaacatttcatagatattgcagttggcacattcttaataaattttctgagaagctagatgcgattaaatatcgagattcctaccaagaatttcatagctgcatatggaattcaagtagtagagaggagtttgactcaagatggattgaaattattgagaagagtgggttgagtgataataagtggctggagtcgatatacgaaattcgttcatcatggatactagcatatgtcaatcatgttttctcagctggaatgtcaagtagtcaaagagcagagagtcaacattctttcttcaagaattatgtttctaagtggaattcattggtggactttatggttcagtttaagaggggacttcttcaccaacgacattatgagttagaggaggatcatattaatgttgatgagaaggcaaaaactatcatgtcccttgacatagaagatcatatggccaaggtttatacatgtaaactattttatgaagttcaagaacagttgagagagagcttcaaatataaacttgaacttgtgtttgaaaatgtcactcaagaacagtttaaggttatacgaaagaacattgacacttgtaagtctcgtgaacttacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

317

Amino Acids

37.46

Weight (kDa)

5.63

Isoelectric Point (pI)

54.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 146
AclWI GGATC 2 cut(s) 299, 741
AcoI YGGCCR 1 cut(s) 795
AcsI RAATTY 6 cut(s) 239, 383, 431, 451, 546, 661
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 2 cut(s) 146, 286
AflIII ACRYGT 1 cut(s) 809
AjnI CCWGG 1 cut(s) 256
AluBI AGCT 5 cut(s) 72, 397, 441, 593, 852
AluI AGCT 5 cut(s) 72, 397, 441, 593, 852
Alw26I GTCTC 2 cut(s) 200, 942
AlwI GGATC 2 cut(s) 299, 741
AoxI GGCC 1 cut(s) 795
ApeKI GCWGC 1 cut(s) 441
ApoI RAATTY 6 cut(s) 239, 383, 431, 451, 546, 661
AseI ATTAAT 1 cut(s) 741
AsuHPI GGTGA 1 cut(s) 698
BaeI ACNNNNGTAYC 2 cut(s) 207, 240
BalI TGGCCA 1 cut(s) 797
BauI CACGAG 1 cut(s) 939
BbvI GCAGC 1 cut(s) 428
BccI CCATC 2 cut(s) 280, 477
BciT130I CCWGG 1 cut(s) 258
BciVI GTATCC 1 cut(s) 555
BcoDI GTCTC 2 cut(s) 200, 942
BfaI CTAG 2 cut(s) 398, 566
BfuI GTATCC 1 cut(s) 555
BisI GCNGC 1 cut(s) 442
BlsI GCNGC 1 cut(s) 443
Bme1390I CCNGG 1 cut(s) 258
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 2 cut(s) 253, 391
BplI GAGNNNNNCTC 2 cut(s) 461, 493
BpmI CTGGAG 1 cut(s) 551
BpuEI CTTGAG 2 cut(s) 463, 876
BsaJI CCNNGG 1 cut(s) 798
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 286
Bse1I ACTGG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 798
BseLI CCNNNNNNNGG 2 cut(s) 146, 286
BseMII CTCAG 2 cut(s) 381, 603
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 2 cut(s) 482, 743
BseXI GCAGC 1 cut(s) 428
BshFI GGCC 1 cut(s) 797
BslFI GGGAC 2 cut(s) 711, 757
BslI CCNNNNNNNGG 2 cut(s) 146, 286
BsmAI GTCTC 2 cut(s) 200, 942
BsmFI GGGAC 2 cut(s) 711, 757
BsmI GAATGC 1 cut(s) 191
BsnI GGCC 1 cut(s) 797
Bsp143I GATC 3 cut(s) 304, 733, 787
BspANI GGCC 1 cut(s) 797
BspCNI CTCAG 2 cut(s) 382, 602
BspPI GGATC 2 cut(s) 299, 741
BsrI ACTGG 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 798
BssMI GATC 3 cut(s) 304, 733, 787
BssSI CACGAG 1 cut(s) 939
BssT1I CCWWGG 1 cut(s) 798
Bst2BI CACGAG 1 cut(s) 939
Bst2UI CCWGG 1 cut(s) 258
Bst4CI ACNGT 4 cut(s) 33, 154, 840, 900
Bst6I CTCTTC 1 cut(s) 497
BstDEI CTNAG 3 cut(s) 390, 589, 654
BstKTI GATC 3 cut(s) 307, 736, 790
BstMAI GTCTC 2 cut(s) 200, 942
BstMBI GATC 3 cut(s) 304, 733, 787
BstNI CCWGG 1 cut(s) 258
BstNSI RCATGY 2 cut(s) 108, 813
BstSCI CCNGG 1 cut(s) 256
BstV1I GCAGC 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 304
BstYI RGATCY 1 cut(s) 304
BsuI GTATCC 1 cut(s) 555
BsuRI GGCC 1 cut(s) 797
BtsIMutI CAGTG 1 cut(s) 144
Csp6I GTAC 1 cut(s) 150
CviAII CATG 6 cut(s) 105, 164, 558, 581, 769, 810
CviJI RGCY 9 cut(s) 72, 212, 323, 397, 441, 529, 593, 797, 852
CviKI_1 RGCY 9 cut(s) 72, 212, 323, 397, 441, 529, 593, 797, 852
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 3 cut(s) 390, 589, 654
DpnI GATC 3 cut(s) 306, 735, 789
DpnII GATC 3 cut(s) 304, 733, 787
EaeI YGGCCR 1 cut(s) 795
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
Eco130I CCWWGG 1 cut(s) 798
EcoRI GAATTC 2 cut(s) 451, 661
EcoRII CCWGG 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 798
ErhI CCWWGG 1 cut(s) 798
FaeI CATG 6 cut(s) 108, 167, 561, 584, 772, 813
FaqI GGGAC 2 cut(s) 711, 757
FatI CATG 6 cut(s) 104, 163, 557, 580, 768, 809
FauNDI CATATG 3 cut(s) 446, 571, 792
Fnu4HI GCNGC 1 cut(s) 442
Fsp4HI GCNGC 1 cut(s) 442
FspBI CTAG 2 cut(s) 398, 566
GluI GCNGC 1 cut(s) 442
GsuI CTGGAG 1 cut(s) 551
HaeIII GGCC 1 cut(s) 797
Hin1II CATG 6 cut(s) 108, 167, 561, 584, 772, 813
HincII GTYRAC 2 cut(s) 157, 626
HindII GTYRAC 2 cut(s) 157, 626
HinfI GANTC 5 cut(s) 5, 419, 476, 533, 622
HpaI GTTAAC 1 cut(s) 157
HphI GGTGA 1 cut(s) 698
Hpy166II GTNNAC 5 cut(s) 157, 626, 673, 815, 944
Hpy188I TCNGA 3 cut(s) 10, 331, 391
Hpy188III TCNNGA 8 cut(s) 57, 196, 416, 480, 640, 833, 893, 941
Hpy8I GTNNAC 5 cut(s) 157, 626, 673, 815, 944
HpyAV CCTTC 1 cut(s) 748
HpyCH4III ACNGT 4 cut(s) 33, 154, 840, 900
HpyCH4V TGCA 6 cut(s) 108, 137, 191, 266, 363, 444
HpyF3I CTNAG 3 cut(s) 390, 589, 654
Hsp92II CATG 6 cut(s) 108, 167, 561, 584, 772, 813
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 3 cut(s) 304, 733, 787
LpnPI CCDG 6 cut(s) 132, 243, 270, 321, 515, 579
Lsp1109I GCAGC 1 cut(s) 428
LweI GCATC 2 cut(s) 253, 391
MaeI CTAG 2 cut(s) 398, 566
MaeIII GTNAC 3 cut(s) 25, 65, 886
MalI GATC 3 cut(s) 306, 735, 789
MboI GATC 3 cut(s) 304, 733, 787
MboII GAAGA 4 cut(s) 514, 628, 695, 797
MflI RGATCY 1 cut(s) 304
MlsI TGGCCA 1 cut(s) 797
MluNI TGGCCA 1 cut(s) 797
MlyI GAGTC 4 cut(s) 14, 470, 542, 631
MnlI CCTC 6 cut(s) 7, 56, 460, 687, 721, 724
Mox20I TGGCCA 1 cut(s) 797
MscI TGGCCA 1 cut(s) 797
MseI TTAA 7 cut(s) 156, 378, 408, 690, 741, 903, 952
MslI CAYNNNNRTG 1 cut(s) 741
Msp20I TGGCCA 1 cut(s) 797
MspA1I CMGCKG 1 cut(s) 593
MspR9I CCNGG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 191
MvaI CCWGG 1 cut(s) 258
NdeI CATATG 3 cut(s) 446, 571, 792
NdeII GATC 3 cut(s) 304, 733, 787
NlaIII CATG 6 cut(s) 108, 167, 561, 584, 772, 813
NmuCI GTSAC 1 cut(s) 886
NspI RCATGY 2 cut(s) 108, 813
PciI ACATGT 1 cut(s) 809
PctI GAATGC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 419
PflMI CCANNNNNTGG 1 cut(s) 146
PkrI GCNGC 1 cut(s) 443
PleI GAGTC 4 cut(s) 13, 470, 541, 630
PpsI GAGTC 4 cut(s) 13, 470, 541, 630
PscI ACATGT 1 cut(s) 809
PshBI ATTAAT 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 256
PspGI CCWGG 1 cut(s) 256
PsuI RGATCY 1 cut(s) 304
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
RseI CAYNNNNRTG 1 cut(s) 741
SaqAI TTAA 7 cut(s) 156, 378, 408, 690, 741, 903, 952
SatI GCNGC 1 cut(s) 442
Sau3AI GATC 3 cut(s) 304, 733, 787
SchI GAGTC 4 cut(s) 14, 470, 542, 631
ScrFI CCNGG 1 cut(s) 258
SetI ASST 8 cut(s) 67, 74, 399, 443, 595, 804, 854, 909
SfaNI GCATC 2 cut(s) 253, 391
SmiMI CAYNNNNRTG 1 cut(s) 741
SmlI CTYRAG 2 cut(s) 478, 891
SmoI CTYRAG 2 cut(s) 478, 891
SspMI CTAG 2 cut(s) 398, 566
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 1 cut(s) 798
TaaI ACNGT 4 cut(s) 33, 154, 840, 900
TaqI TCGA 2 cut(s) 415, 536
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 7 cut(s) 156, 378, 408, 690, 741, 903, 952
Tru9I TTAA 7 cut(s) 156, 378, 408, 690, 741, 903, 952
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 886
TseI GCWGC 1 cut(s) 441
Tsp45I GTSAC 1 cut(s) 886
TspDTI ATGAA 5 cut(s) 341, 425, 543, 654, 840
TspRI CASTG 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 146
VspI ATTAAT 1 cut(s) 741
XapI RAATTY 6 cut(s) 239, 383, 431, 451, 546, 661
XceI RCATGY 2 cut(s) 108, 813
XspI CTAG 2 cut(s) 398, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.