Rh7CG104500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000164
Physical Location & Seq
Reverse (-)
7932594 .. 7936777
4184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG104500.1

Sequence Viewer

Length: 303 bp
ATGGAGACTAATGGGATTATTGTACCTGCGGAAATGGAAACTGAACCTATTCAAGCTATCCCTCCGTCAGAAGAAAATGTCTCTACTTCAACTTTCTATCCTCAACCTAACATCATATCAGCAAAAACAAAGAGAAAAGGTATACACTTTAGGAACAAACATCCACTAGGGGACAAACATAGGCTATGTTTATATCACAACTCGATAGCTGGTACTGGAAAAGCAAGAGTCTTCACGGAACCTATCCTTGTGGCTCTGAGAACATCTCTTCCAATCAATGGCGGTAGGATTGCTGTGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.0

Weight (kDa)

9.3

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 34
AccB7I CCANNNNNTGG 1 cut(s) 278
AccI GTMKAC 1 cut(s) 142
AciI CCGC 2 cut(s) 29, 282
AfaI GTAC 2 cut(s) 24, 214
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 2 cut(s) 53, 90
AloI GAACNNNNNNTCC 2 cut(s) 253, 285
AluBI AGCT 2 cut(s) 56, 209
AluI AGCT 2 cut(s) 56, 209
Alw26I GTCTC 1 cut(s) 85
Asp700I GAANNNNTTC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 1 cut(s) 167
BfuAI ACCTGC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 240
BpiI GAAGAC 1 cut(s) 223
BplI GAGNNNNNCTC 2 cut(s) 250, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 220
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 185
BspACI CCGC 2 cut(s) 29, 282
BspCNI CTCAG 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 240
BspMI ACCTGC 1 cut(s) 34
BsrI ACTGG 1 cut(s) 220
BssNAI GTATAC 1 cut(s) 143
Bst1107I GTATAC 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 273
BstDEI CTNAG 1 cut(s) 257
BstF5I GGATG 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 85
BstV2I GAAGAC 1 cut(s) 223
BstZ17I GTATAC 1 cut(s) 143
BtsCI GGATG 1 cut(s) 160
BveI ACCTGC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 23, 213
CviJI RGCY 4 cut(s) 56, 184, 209, 254
CviKI_1 RGCY 4 cut(s) 56, 184, 209, 254
CviQI GTAC 2 cut(s) 23, 213
DdeI CTNAG 1 cut(s) 257
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
FaiI YATR 5 cut(s) 116, 143, 180, 187, 193
FaqI GGGAC 1 cut(s) 185
FblI GTMKAC 1 cut(s) 142
FokI GGATG 1 cut(s) 147
FspBI CTAG 1 cut(s) 167
HinfI GANTC 1 cut(s) 228
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 2 cut(s) 70, 258
Hpy8I GTNNAC 1 cut(s) 143
HpyF3I CTNAG 1 cut(s) 257
LpnPI CCDG 3 cut(s) 39, 195, 201
MaeI CTAG 1 cut(s) 167
MboII GAAGA 3 cut(s) 83, 223, 260
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 2 cut(s) 72, 111
MroXI GAANNNNTTC 1 cut(s) 48
NlaIV GGNNCC 1 cut(s) 240
PdmI GAANNNNTTC 1 cut(s) 48
PflMI CCANNNNNTGG 1 cut(s) 278
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PspN4I GGNNCC 1 cut(s) 240
RsaI GTAC 2 cut(s) 24, 214
RsaNI GTAC 2 cut(s) 23, 213
SchI GAGTC 1 cut(s) 237
SetI ASST 7 cut(s) 28, 49, 58, 109, 142, 211, 244
SgeI CNNG 9 cut(s) 38, 65, 179, 214, 222, 228, 237, 247, 260
SsiI CCGC 2 cut(s) 29, 282
SspMI CTAG 1 cut(s) 167
TaqI TCGA 1 cut(s) 203
TspGWI ACGGA 2 cut(s) 54, 251
Van91I CCANNNNNTGG 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.