Rmu_sc0005639.1_g000025

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005639.1
OG0000164
Physical Location & Seq
Forward (+)
114344 .. 118143
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005639.1_g000025.1.cds

Sequence Viewer

Length: 1020 bp
atgtttgttctaaagaaggggacactgatgagacgaggagaaaaaaaaaatgaaattgaggaaagagatcgagggaagactcgaacatggtgcaatgcaaaattaaccgtatgtaatgatggaagtaattatgtggtcaagactttcaatgaggaacgcaaccatcccccaacaacaccaagcaaagttcatttgttaagatcacagtgtactgtgtctactgcaaaaaagaatctgatacaagacttgaggcgggtggacattcctatataccagcaatttgaattattccagacacaagctggtgggcatgcaaatgttggctgcattgagagagatttaagaaatgcggtgcgagatgagagagaagaagtcaagggtcatgatgttgacattttatatgagcacttcaaagctgagcaagagaaggatccagatttcttttttgaattttatacggatgaagaaaacaggcttctcagatgttcctggattgattcaattggaaaaaaatcatatacatgttttgatgatgtggttgtatttgatacaacatacaacactaatcgttataagatgatttttgctaatacaatgcctaaaagtgccccgaatgttattatcaccgatcaagatcaagcaatgagtaaggcaattgctcatgttttgccaaacacaattcacaggtattgtgtgtggcatattctaaagaaatttccggagaagactaacgtagcttttatgcaagattactatgaacttttcaagacatgtatatgggattcggagtgtccagaagaatttgaaaagagatggtttgaagcattggaaaaaagtcaacagacaaataatgactggttagaaaagatgtatgaactgcgtggcgaggtcggcttcagaaagggtgaggcaaagtggtcgaaggtggggatggaggcggtggaggtggagcttcatgcagagatccccttgcactccagaccatacttctggagtttgcagtcttatcggaaatggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

339

Amino Acids

40.24

Weight (kDa)

6.58

Isoelectric Point (pI)

43.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 573
AccI GTMKAC 1 cut(s) 218
AccIII TCCGGA 1 cut(s) 718
AciI CCGC 3 cut(s) 253, 350, 938
AclWI GGATC 3 cut(s) 425, 438, 958
AcsI RAATTY 3 cut(s) 449, 713, 800
AcuI CTGAAG 1 cut(s) 880
AfaI GTAC 1 cut(s) 211
AflIII ACRYGT 2 cut(s) 521, 770
AgsI TTSAA 8 cut(s) 148, 284, 412, 449, 501, 766, 806, 821
AjnI CCWGG 1 cut(s) 488
AluBI AGCT 4 cut(s) 302, 416, 737, 952
AluI AGCT 4 cut(s) 302, 416, 737, 952
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 3 cut(s) 425, 438, 958
Aor13HI TCCGGA 1 cut(s) 718
ApeKI GCWGC 1 cut(s) 324
ApoI RAATTY 3 cut(s) 449, 713, 800
AsuHPI GGTGA 2 cut(s) 616, 917
BaeGI GKGCMC 1 cut(s) 610
BamHI GGATCC 1 cut(s) 430
BbsI GAAGAC 2 cut(s) 83, 731
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 1 cut(s) 311
BccI CCATC 4 cut(s) 113, 171, 807, 925
BcgI CGANNNNNNTGC 5 cut(s) 72, 106, 900, 934, 989
BciT130I CCWGG 1 cut(s) 490
BcoDI GTCTC 1 cut(s) 25
BisI GCNGC 1 cut(s) 325
BlpI GCTNAGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 326
Bme1390I CCNGG 1 cut(s) 490
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 1 cut(s) 490
BpiI GAAGAC 2 cut(s) 83, 731
BpmI CTGGAG 2 cut(s) 961, 1012
Bpu1102I GCTNAGC 1 cut(s) 417
BpuEI CTTGAG 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 633
BsaWI WCCGGW 1 cut(s) 718
Bse1I ACTGG 1 cut(s) 860
Bse3DI GCAATG 2 cut(s) 100, 648
Bse8I GATNNNNATC 1 cut(s) 633
BseAI TCCGGA 1 cut(s) 718
BseBI CCWGG 1 cut(s) 490
BseGI GGATG 3 cut(s) 163, 466, 936
BseJI GATNNNNATC 1 cut(s) 633
BseMI GCAATG 2 cut(s) 100, 648
BseMII CTCAG 2 cut(s) 408, 493
BseNI ACTGG 1 cut(s) 860
BseRI GAGGAG 1 cut(s) 51
BseSI GKGCMC 1 cut(s) 610
BseXI GCAGC 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 408
BsiSI CCGG 1 cut(s) 719
BslFI GGGAC 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 25
BsmBI CGTCTC 1 cut(s) 25
BsmFI GGGAC 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 408, 610
Bsp13I TCCGGA 1 cut(s) 718
Bsp143I GATC 6 cut(s) 67, 200, 430, 628, 634, 963
Bsp1720I GCTNAGC 1 cut(s) 417
BspACI CCGC 3 cut(s) 253, 350, 938
BspCNI CTCAG 2 cut(s) 409, 492
BspEI TCCGGA 1 cut(s) 718
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 432
BspPI GGATC 3 cut(s) 425, 438, 958
BsrDI GCAATG 2 cut(s) 100, 648
BsrI ACTGG 1 cut(s) 860
BssMI GATC 6 cut(s) 67, 200, 430, 628, 634, 963
Bst2UI CCWGG 1 cut(s) 490
Bst4CI ACNGT 3 cut(s) 109, 207, 214
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 2 cut(s) 417, 479
BstF5I GGATG 3 cut(s) 163, 466, 936
BstKTI GATC 6 cut(s) 70, 203, 433, 631, 637, 966
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 6 cut(s) 67, 200, 430, 628, 634, 963
BstMWI GCNNNNNNNGC 1 cut(s) 891
BstNI CCWGG 1 cut(s) 490
BstNSI RCATGY 3 cut(s) 314, 525, 774
BstSCI CCNGG 1 cut(s) 488
BstSLI GKGCMC 1 cut(s) 610
BstV1I GCAGC 1 cut(s) 311
BstV2I GAAGAC 2 cut(s) 83, 731
BstX2I RGATCY 2 cut(s) 430, 963
BstXI CCANNNNNNTGG 1 cut(s) 990
BstYI RGATCY 2 cut(s) 430, 963
BtsCI GGATG 3 cut(s) 163, 466, 936
BtsIMutI CAGTG 2 cut(s) 23, 212
Cac8I GCNNGC 1 cut(s) 312
CciI TCATGA 1 cut(s) 382
Csp6I GTAC 1 cut(s) 210
CviAII CATG 7 cut(s) 87, 311, 383, 522, 662, 771, 956
CviJI RGCY 7 cut(s) 302, 324, 416, 475, 737, 894, 952
CviKI_1 RGCY 7 cut(s) 302, 324, 416, 475, 737, 894, 952
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 2 cut(s) 417, 479
DpnI GATC 6 cut(s) 69, 202, 432, 630, 636, 965
DpnII GATC 6 cut(s) 67, 200, 430, 628, 634, 963
Eco57I CTGAAG 1 cut(s) 880
EcoRII CCWGG 1 cut(s) 488
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 7 cut(s) 90, 314, 386, 525, 665, 774, 959
FaqI GGGAC 1 cut(s) 34
FatI CATG 7 cut(s) 86, 310, 382, 521, 661, 770, 955
FauI CCCGC 1 cut(s) 246
FblI GTMKAC 1 cut(s) 218
Fnu4HI GCNGC 1 cut(s) 325
FokI GGATG 3 cut(s) 150, 473, 943
Fsp4HI GCNGC 1 cut(s) 325
GluI GCNGC 1 cut(s) 325
GsuI CTGGAG 2 cut(s) 961, 1012
HapII CCGG 1 cut(s) 719
Hin1II CATG 7 cut(s) 90, 314, 386, 525, 665, 774, 959
HincII GTYRAC 2 cut(s) 391, 839
HindII GTYRAC 2 cut(s) 391, 839
HinfI GANTC 4 cut(s) 79, 232, 497, 782
HpaII CCGG 1 cut(s) 719
HphI GGTGA 2 cut(s) 616, 917
Hpy166II GTNNAC 5 cut(s) 210, 219, 259, 391, 839
Hpy188I TCNGA 5 cut(s) 237, 482, 787, 899, 1011
Hpy8I GTNNAC 5 cut(s) 210, 219, 259, 391, 839
HpyAV CCTTC 3 cut(s) 10, 421, 916
HpyCH4III ACNGT 3 cut(s) 109, 207, 214
HpyCH4IV ACGT 1 cut(s) 732
HpyCH4V TGCA 9 cut(s) 93, 98, 224, 314, 327, 745, 959, 973, 1000
HpyF10VI GCNNNNNNNGC 1 cut(s) 891
HpyF3I CTNAG 2 cut(s) 417, 479
HpySE526I ACGT 1 cut(s) 732
Hsp92II CATG 7 cut(s) 90, 314, 386, 525, 665, 774, 959
Kpn2I TCCGGA 1 cut(s) 718
Kzo9I GATC 6 cut(s) 67, 200, 430, 628, 634, 963
LmnI GCTCC 1 cut(s) 949
Lsp1109I GCAGC 1 cut(s) 311
MaeII ACGT 1 cut(s) 732
MalI GATC 6 cut(s) 69, 202, 432, 630, 636, 965
MboI GATC 6 cut(s) 67, 200, 430, 628, 634, 963
MboII GAAGA 5 cut(s) 88, 380, 476, 736, 809
MfeI CAATTG 2 cut(s) 501, 654
MflI RGATCY 2 cut(s) 430, 963
MhlI GDGCHC 2 cut(s) 408, 610
MlyI GAGTC 1 cut(s) 73
MnlI CCTC 9 cut(s) 29, 52, 65, 145, 243, 880, 901, 928, 937
MroI TCCGGA 1 cut(s) 718
MseI TTAA 3 cut(s) 104, 197, 341
MslI CAYNNNNRTG 3 cut(s) 315, 520, 775
MspI CCGG 1 cut(s) 719
MspR9I CCNGG 1 cut(s) 490
MunI CAATTG 2 cut(s) 501, 654
MvaI CCWGG 1 cut(s) 490
MwoI GCNNNNNNNGC 1 cut(s) 891
NdeII GATC 6 cut(s) 67, 200, 430, 628, 634, 963
NlaIII CATG 7 cut(s) 90, 314, 386, 525, 665, 774, 959
NlaIV GGNNCC 1 cut(s) 432
NspI RCATGY 3 cut(s) 314, 525, 774
PaeI GCATGC 1 cut(s) 314
PagI TCATGA 1 cut(s) 382
PciI ACATGT 2 cut(s) 521, 770
PfeI GAWTC 3 cut(s) 232, 497, 782
PfoI TCCNGGA 1 cut(s) 488
PkrI GCNGC 1 cut(s) 326
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PscI ACATGT 2 cut(s) 521, 770
PsiI TTATAA 1 cut(s) 573
Psp6I CCWGG 1 cut(s) 488
PspGI CCWGG 1 cut(s) 488
PspN4I GGNNCC 1 cut(s) 432
PsuI RGATCY 2 cut(s) 430, 963
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
RseI CAYNNNNRTG 3 cut(s) 315, 520, 775
SaqAI TTAA 3 cut(s) 104, 197, 341
SatI GCNGC 1 cut(s) 325
Sau3AI GATC 6 cut(s) 67, 200, 430, 628, 634, 963
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 490
SduI GDGCHC 2 cut(s) 408, 610
SetI ASST 9 cut(s) 304, 418, 689, 735, 739, 891, 927, 948, 954
SmiMI CAYNNNNRTG 3 cut(s) 315, 520, 775
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
SphI GCATGC 1 cut(s) 314
SsiI CCGC 3 cut(s) 253, 350, 938
StyD4I CCNGG 1 cut(s) 488
TaaI ACNGT 3 cut(s) 109, 207, 214
TaiI ACGT 1 cut(s) 735
TaqI TCGA 3 cut(s) 70, 82, 920
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 3 cut(s) 232, 497, 782
Tru1I TTAA 3 cut(s) 104, 197, 341
Tru9I TTAA 3 cut(s) 104, 197, 341
TscAI CASTG 2 cut(s) 30, 212
TseI GCWGC 1 cut(s) 324
TspDTI ATGAA 6 cut(s) 66, 179, 477, 771, 888, 944
TspGWI ACGGA 1 cut(s) 473
TspRI CASTG 2 cut(s) 30, 212
XapI RAATTY 3 cut(s) 449, 713, 800
XceI RCATGY 3 cut(s) 314, 525, 774
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.