Rmu_sc0025564.1_g000001

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0025564.1
OG0000164
Physical Location & Seq
Forward (+)
37 .. 1472
1436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0025564.1_g000001.1.cds

Sequence Viewer

Length: 1326 bp
atgaggaaggagtatgtctgttataagcaaggaacttccaaagttcaaggagaaaaacgaaagagaggattaccaaaagtgggttgtaaagcaagaattgcagctgtgagaaggaaggagtatggaagatatgcaatctctgtatttgtggagggtcacaaccacccattaacaagcccgcctagagtacatttgttgagatctcaccgtcgtgtttcaagagttaacacagttctatcacagcaactaagcttggtaaatgttcagaaacataaacagtttgaattctttggtgttcaagcaggtggcattcaaaatattggttgtacagagcgtgatctgtataattatggaagaacttgtcgtgaagagaagaaggggcatgatggagatctattgtacatgcattttcaaaatgagaaagaaaaagattcttcttttgtttatacaatggagtcagatgaggaaaccagagtaacaatatgcttttgggctgactcaatttcaagacgagcttacagcttttatggagatgtagttatctttgatactacatacaacacaaatcggtatggaatgatttttgcaccattcactggtgttaataatcatgggcagacaatcatctttgcttgtgcattcttaaatgatgagacaaccgattcttttgtttggttattcaaggaatttctaaatgctatgccaggaaatgcaccagaaaatgcccccaaaatgattattactgaccaagatcctgctatgactaaagccatttcagaagctctcccacaaacatttcatagatattgcagttggcacattctaaataaattttctgagaagctagatgcaattaaatatcgggattactaccaagactttcatagctgcatatggaattcaagtagtagagaggagtttgactcaagatggattgaaattactgaaaagagtaggttgagtgataacaagtggttggagtcaatatatgaaattcgttcgtcatggataccagcacacgtaaatcatgttttctcagcaggaatgtcaagtagtcaaagagcagagggtcaacattctttcttcaagaattatgtttctgctcagaattcgttggtggaatttatggttcagtttaagagggcacttcttcaccaacgccattatgagttagaggaggatcatatgaatattgatgagaagccaaaaacggtcatgtcccttgacatagaagatcatatggctaaagtttatacacggaagctattttatgaagttcaagaacagttgaaagagagcttcaaatataaactagaacttctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

441

Amino Acids

51.8

Weight (kDa)

8.43

Isoelectric Point (pI)

55.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 24
AarI CACCTGC 1 cut(s) 293
Acc36I ACCTGC 1 cut(s) 293
AccB7I CCANNNNNTGG 1 cut(s) 596
AciI CCGC 1 cut(s) 179
AclWI GGATC 2 cut(s) 746, 1188
AcsI RAATTY 7 cut(s) 284, 686, 830, 898, 993, 1108, 1121
AfaI GTAC 3 cut(s) 189, 328, 401
AfiI CCNNNNNNNGG 2 cut(s) 80, 596
AflIII ACRYGT 1 cut(s) 1018
AjnI CCWGG 1 cut(s) 703
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 9 cut(s) 104, 252, 515, 522, 782, 844, 888, 1264, 1299
AluI AGCT 9 cut(s) 104, 252, 515, 522, 782, 844, 888, 1264, 1299
Alw26I GTCTC 1 cut(s) 647
AlwI GGATC 2 cut(s) 746, 1188
ApeKI GCWGC 2 cut(s) 101, 888
ApoI RAATTY 7 cut(s) 284, 686, 830, 898, 993, 1108, 1121
AsuHPI GGTGA 2 cut(s) 197, 1145
BaeGI GKGCMC 1 cut(s) 1147
BbvI GCAGC 2 cut(s) 113, 875
BccI CCATC 2 cut(s) 380, 924
BciT130I CCWGG 1 cut(s) 705
BciVI GTATCC 1 cut(s) 1002
BcoDI GTCTC 1 cut(s) 647
BfaI CTAG 3 cut(s) 183, 845, 1313
BfmI CTRYAG 1 cut(s) 1322
BfuAI ACCTGC 1 cut(s) 293
BfuI GTATCC 1 cut(s) 1002
BglII AGATCT 2 cut(s) 200, 391
BisI GCNGC 2 cut(s) 102, 889
BlsI GCNGC 2 cut(s) 103, 890
Bme1390I CCNGG 1 cut(s) 705
BmrFI CCNGG 1 cut(s) 705
BmsI GCATC 1 cut(s) 838
BplI GAGNNNNNCTC 2 cut(s) 908, 940
BpuEI CTTGAG 1 cut(s) 910
BsaAI YACGTR 1 cut(s) 1021
BsaBI GATNNNNATC 1 cut(s) 390
BsaXI ACNNNNNCTCC 2 cut(s) 522, 552
Bsc4I CCNNNNNNNGG 2 cut(s) 80, 596
Bse1I ACTGG 1 cut(s) 601
Bse8I GATNNNNATC 1 cut(s) 390
BseBI CCWGG 1 cut(s) 705
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 2 cut(s) 80, 596
BseMII CTCAG 3 cut(s) 828, 1050, 1118
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 2 cut(s) 929, 1190
BseSI GKGCMC 1 cut(s) 1147
BseXI GCAGC 2 cut(s) 113, 875
BslFI GGGAC 1 cut(s) 1204
BslI CCNNNNNNNGG 2 cut(s) 80, 596
BsmAI GTCTC 1 cut(s) 647
BsmFI GGGAC 1 cut(s) 1204
BsmI GAATGC 2 cut(s) 309, 638
Bsp1286I GDGCHC 1 cut(s) 1147
Bsp1407I TGTACA 2 cut(s) 326, 399
Bsp143I GATC 6 cut(s) 200, 337, 391, 751, 1180, 1234
BspACI CCGC 1 cut(s) 179
BspCNI CTCAG 3 cut(s) 829, 1049, 1117
BspMI ACCTGC 1 cut(s) 293
BspPI GGATC 2 cut(s) 746, 1188
BsrGI TGTACA 2 cut(s) 326, 399
BsrI ACTGG 1 cut(s) 601
BssMI GATC 6 cut(s) 200, 337, 391, 751, 1180, 1234
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 5 cut(s) 209, 232, 279, 1213, 1287
Bst6I CTCTTC 1 cut(s) 363
BstAPI GCANNNNNTGC 1 cut(s) 98
BstAUI TGTACA 2 cut(s) 326, 399
BstBAI YACGTR 1 cut(s) 1021
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 4 cut(s) 248, 837, 1036, 1104
BstKTI GATC 6 cut(s) 203, 340, 394, 754, 1183, 1237
BstMAI GTCTC 1 cut(s) 647
BstMBI GATC 6 cut(s) 200, 337, 391, 751, 1180, 1234
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 705
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 1 cut(s) 703
BstSFI CTRYAG 1 cut(s) 1322
BstSLI GKGCMC 1 cut(s) 1147
BstV1I GCAGC 2 cut(s) 113, 875
BstX2I RGATCY 3 cut(s) 200, 391, 751
BstYI RGATCY 3 cut(s) 200, 391, 751
BsuI GTATCC 1 cut(s) 1002
BtsIMutI CAGTG 1 cut(s) 594
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 1 cut(s) 179
Csp6I GTAC 3 cut(s) 188, 327, 400
CviAII CATG 6 cut(s) 383, 403, 611, 1005, 1028, 1216
CviQI GTAC 3 cut(s) 188, 327, 400
DdeI CTNAG 4 cut(s) 248, 837, 1036, 1104
DpnI GATC 6 cut(s) 202, 339, 393, 753, 1182, 1236
DpnII GATC 6 cut(s) 200, 337, 391, 751, 1180, 1234
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
EcoRI GAATTC 3 cut(s) 284, 898, 1108
EcoRII CCWGG 1 cut(s) 703
EcoT22I ATGCAT 1 cut(s) 408
FaeI CATG 6 cut(s) 386, 406, 614, 1008, 1031, 1219
FalI AAGNNNNNCTT 2 cut(s) 499, 531
FaqI GGGAC 1 cut(s) 1204
FatI CATG 6 cut(s) 382, 402, 610, 1004, 1027, 1215
FauI CCCGC 1 cut(s) 186
FauNDI CATATG 3 cut(s) 893, 1185, 1239
Fnu4HI GCNGC 2 cut(s) 102, 889
Fsp4HI GCNGC 2 cut(s) 102, 889
FspBI CTAG 3 cut(s) 183, 845, 1313
GluI GCNGC 2 cut(s) 102, 889
Hin1II CATG 6 cut(s) 386, 406, 614, 1008, 1031, 1219
HincII GTYRAC 2 cut(s) 226, 1073
HindII GTYRAC 2 cut(s) 226, 1073
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 6 cut(s) 431, 455, 497, 662, 923, 980
HpaI GTTAAC 1 cut(s) 226
HphI GGTGA 2 cut(s) 197, 1145
Hpy166II GTNNAC 2 cut(s) 226, 1073
Hpy188I TCNGA 5 cut(s) 267, 460, 778, 838, 1107
Hpy188III TCNNGA 7 cut(s) 219, 365, 507, 863, 927, 1087, 1280
Hpy8I GTNNAC 2 cut(s) 226, 1073
Hpy99I CGWCG 1 cut(s) 213
HpyAV CCTTC 3 cut(s) 105, 109, 370
HpyCH4III ACNGT 5 cut(s) 209, 232, 279, 1213, 1287
HpyCH4IV ACGT 1 cut(s) 1020
HpyCH4V TGCA 9 cut(s) 101, 134, 406, 587, 638, 713, 810, 851, 891
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 4 cut(s) 248, 837, 1036, 1104
HpySE526I ACGT 1 cut(s) 1020
Hsp92II CATG 6 cut(s) 386, 406, 614, 1008, 1031, 1219
KspAI GTTAAC 1 cut(s) 226
Kzo9I GATC 6 cut(s) 200, 337, 391, 751, 1180, 1234
LpnPI CCDG 9 cut(s) 288, 484, 582, 690, 717, 729, 768, 1026, 1026
Lsp1109I GCAGC 2 cut(s) 113, 875
LweI GCATC 1 cut(s) 838
MaeI CTAG 3 cut(s) 183, 845, 1313
MaeII ACGT 1 cut(s) 1020
MaeIII GTNAC 2 cut(s) 155, 475
MalI GATC 6 cut(s) 202, 339, 393, 753, 1182, 1236
MboI GATC 6 cut(s) 200, 337, 391, 751, 1180, 1234
MboII GAAGA 8 cut(s) 138, 366, 380, 385, 426, 1075, 1142, 1244
MflI RGATCY 3 cut(s) 200, 391, 751
MhlI GDGCHC 1 cut(s) 1147
MlyI GAGTC 4 cut(s) 464, 491, 917, 989
MmeI TCCRAC 1 cut(s) 957
MnlI CCTC 8 cut(s) 59, 145, 457, 907, 1060, 1134, 1168, 1171
Mph1103I ATGCAT 1 cut(s) 408
MseI TTAA 6 cut(s) 170, 225, 603, 644, 855, 1137
MslI CAYNNNNRTG 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 705
Mva1269I GAATGC 2 cut(s) 309, 638
MvaI CCWGG 1 cut(s) 705
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeI CATATG 3 cut(s) 893, 1185, 1239
NdeII GATC 6 cut(s) 200, 337, 391, 751, 1180, 1234
NlaIII CATG 6 cut(s) 386, 406, 614, 1008, 1031, 1219
NmuCI GTSAC 1 cut(s) 155
NsiI ATGCAT 1 cut(s) 408
NspI RCATGY 1 cut(s) 406
OliI CACNNNNGTG 1 cut(s) 210
PaqCI CACCTGC 1 cut(s) 293
PctI GAATGC 2 cut(s) 309, 638
PfeI GAWTC 2 cut(s) 431, 662
PflMI CCANNNNNTGG 1 cut(s) 596
PkrI GCNGC 2 cut(s) 103, 890
PleI GAGTC 4 cut(s) 463, 491, 917, 988
PpsI GAGTC 4 cut(s) 463, 491, 917, 988
Ppu21I YACGTR 1 cut(s) 1021
PsiI TTATAA 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 703
PspGI CCWGG 1 cut(s) 703
PsuI RGATCY 3 cut(s) 200, 391, 751
PvuII CAGCTG 1 cut(s) 104
RsaI GTAC 3 cut(s) 189, 328, 401
RsaNI GTAC 3 cut(s) 188, 327, 400
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 6 cut(s) 170, 225, 603, 644, 855, 1137
SatI GCNGC 2 cut(s) 102, 889
Sau3AI GATC 6 cut(s) 200, 337, 391, 751, 1180, 1234
SchI GAGTC 4 cut(s) 464, 491, 917, 989
ScrFI CCNGG 1 cut(s) 705
SduI GDGCHC 1 cut(s) 1147
SfaNI GCATC 1 cut(s) 838
SfcI CTRYAG 1 cut(s) 1322
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 925
SmoI CTYRAG 1 cut(s) 925
SsiI CCGC 1 cut(s) 179
SspI AATATT 2 cut(s) 319, 1192
SspMI CTAG 3 cut(s) 183, 845, 1313
StyD4I CCNGG 1 cut(s) 703
TaaI ACNGT 5 cut(s) 209, 232, 279, 1213, 1287
TaiI ACGT 1 cut(s) 1023
TatI WGTACW 3 cut(s) 187, 326, 399
TfiI GAWTC 2 cut(s) 431, 662
Tru1I TTAA 6 cut(s) 170, 225, 603, 644, 855, 1137
Tru9I TTAA 6 cut(s) 170, 225, 603, 644, 855, 1137
TscAI CASTG 1 cut(s) 601
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 2 cut(s) 101, 888
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 5 cut(s) 788, 872, 1005, 1202, 1287
TspGWI ACGGA 1 cut(s) 1273
TspRI CASTG 1 cut(s) 601
Van91I CCANNNNNTGG 1 cut(s) 596
XapI RAATTY 7 cut(s) 284, 686, 830, 898, 993, 1108, 1121
XceI RCATGY 1 cut(s) 406
XspI CTAG 3 cut(s) 183, 845, 1313
Zsp2I ATGCAT 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.