FvH4_6g01982

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000164
Physical Location & Seq
Forward (+)
1142571 .. 1145807
3237 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01982.t1

Sequence Viewer

Length: 759 bp
ATGGAGGTCCAAATGGTTCATTTGTATACTAAAAAGTACTTTCAGTACTTTCAAGTTCAGCTTCATGATGGTAATGGCTATTTTGTAGATGTCGTAATAGAGGATGACATTCGTTGTGTTTACAAAACTAAAAGGGTGTTTGCTAAAAACCTTAGAATGCGGACGCTTGTACATGATAAGATTATGGAGTTGCCCAAAGATTATATATTGAGAAGATGGACAAGGTTTTCAAGAGTTCATAAACAAACAAGTCAAGGCCAAGATGGTGCAGATAGTTCATTGATAATGAGACACAATGGTATGTTCAAAATTGCTTCCAGCTTAATTGATGAGGCTGCTATTTCAACTGAGGGGACTGAACTTGTGAAGAAGTCATTTGAAGGGCTATTGGAGCAAATTAAGAAGCTAAATCTTTCTGTTGGGCAATCTTCTACAAAAAATTCCACAGCTGGAACTTCTCAAGAAAATCGTTTCCTGGATCCTTTTCAAGTGAAGACTAAAGGCAGTGGATTATGCCTAACATCATGGAGAGATAGGAAAGGAAAATCTTCCATCTCCGGCGATACGAGTCTGGGTCTCCGGCGAAACGAGTTTGGTTTAATCTCCAGAGGGTCTTTTGGAAACGACGGAGAAGAGGAGAAGAATCAGGCACGACAGTCGTCCTCTCCGGCGATAGAAGTTTGGGTGCTGGTTATGTCTGTGAGAAAGACGATGAGCAGAAGTGGAGAAGACGAGAAGGAGACGTCTTGGGTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

253

Amino Acids

28.79

Weight (kDa)

9.41

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 746
AccI GTMKAC 1 cut(s) 26
AciI CCGC 1 cut(s) 160
AclWI GGATC 2 cut(s) 473, 486
AcsI RAATTY 1 cut(s) 439
AcyI GRCGYC 1 cut(s) 743
AfaI GTAC 3 cut(s) 38, 47, 171
AgsI TTSAA 6 cut(s) 53, 231, 307, 345, 380, 488
AjnI CCWGG 1 cut(s) 474
AluBI AGCT 4 cut(s) 61, 321, 406, 449
AluI AGCT 4 cut(s) 61, 321, 406, 449
Alw26I GTCTC 3 cut(s) 283, 581, 734
AlwI GGATC 2 cut(s) 473, 486
AoxI GGCC 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 1 cut(s) 439
Asp700I GAANNNNTTC 1 cut(s) 547
AspS9I GGNCC 1 cut(s) 7
AvaII GGWCC 1 cut(s) 7
BamHI GGATCC 1 cut(s) 478
BbsI GAAGAC 2 cut(s) 500, 735
BbvI GCAGC 1 cut(s) 322
BccI CCATC 4 cut(s) 62, 210, 257, 560
BcgI CGANNNNNNTGC 2 cut(s) 639, 673
BciT130I CCWGG 1 cut(s) 476
BcoDI GTCTC 3 cut(s) 283, 581, 734
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
BmcAI AGTACT 2 cut(s) 38, 47
Bme1390I CCNGG 1 cut(s) 476
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 480
BmrFI CCNGG 1 cut(s) 476
BoxI GACNNNNGTC 1 cut(s) 658
BpiI GAAGAC 2 cut(s) 500, 735
BpmI CTGGAG 1 cut(s) 589
BpuEI CTTGAG 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 743
BsaI GGTCTC 1 cut(s) 581
BseBI CCWGG 1 cut(s) 476
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 650
BseXI GCAGC 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 1 cut(s) 258
BsiSI CCGG 3 cut(s) 558, 580, 668
BslFI GGGAC 1 cut(s) 367
BsmAI GTCTC 3 cut(s) 283, 581, 734
BsmBI CGTCTC 1 cut(s) 734
BsmFI GGGAC 1 cut(s) 367
BsmI GAATGC 1 cut(s) 162
BsnI GGCC 1 cut(s) 258
Bso31I GGTCTC 1 cut(s) 581
Bsp1407I TGTACA 1 cut(s) 169
Bsp143I GATC 1 cut(s) 478
BspACI CCGC 1 cut(s) 160
BspANI GGCC 1 cut(s) 258
BspCNI CTCAG 1 cut(s) 340
BspHI TCATGA 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 480
BspPI GGATC 2 cut(s) 473, 486
BspTNI GGTCTC 1 cut(s) 581
BsrGI TGTACA 1 cut(s) 169
BssMI GATC 1 cut(s) 478
BssNAI GTATAC 1 cut(s) 27
BssNI GRCGYC 1 cut(s) 743
Bst1107I GTATAC 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 1 cut(s) 657
Bst6I CTCTTC 1 cut(s) 627
BstACI GRCGYC 1 cut(s) 743
BstAUI TGTACA 1 cut(s) 169
BstDEI CTNAG 2 cut(s) 152, 348
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 1 cut(s) 481
BstMAI GTCTC 3 cut(s) 283, 581, 734
BstMBI GATC 1 cut(s) 478
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstNI CCWGG 1 cut(s) 476
BstPAI GACNNNNGTC 1 cut(s) 658
BstSCI CCNGG 1 cut(s) 474
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 2 cut(s) 500, 735
BstX2I RGATCY 1 cut(s) 478
BstYI RGATCY 1 cut(s) 478
BstZ17I GTATAC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 1 cut(s) 511
BtsIMutI CAGTG 1 cut(s) 511
CciI TCATGA 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 172
Csp6I GTAC 3 cut(s) 37, 46, 170
CviAII CATG 3 cut(s) 65, 173, 525
CviJI RGCY 8 cut(s) 61, 78, 258, 321, 335, 385, 406, 449
CviKI_1 RGCY 8 cut(s) 61, 78, 258, 321, 335, 385, 406, 449
CviQI GTAC 3 cut(s) 37, 46, 170
DdeI CTNAG 2 cut(s) 152, 348
DpnI GATC 1 cut(s) 480
DpnII GATC 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
Eco31I GGTCTC 1 cut(s) 581
Eco47I GGWCC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 474
Esp3I CGTCTC 1 cut(s) 734
FaeI CATG 3 cut(s) 68, 176, 528
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 1 cut(s) 367
FatI CATG 3 cut(s) 64, 172, 524
FblI GTMKAC 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 336
GluI GCNGC 1 cut(s) 336
GsuI CTGGAG 1 cut(s) 589
HaeIII GGCC 1 cut(s) 258
HapII CCGG 3 cut(s) 558, 580, 668
HgaI GACGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 743
Hin1II CATG 3 cut(s) 68, 176, 528
HinfI GANTC 2 cut(s) 568, 643
HpaII CCGG 3 cut(s) 558, 580, 668
Hpy166II GTNNAC 2 cut(s) 27, 121
Hpy188III TCNNGA 4 cut(s) 65, 231, 461, 606
Hpy8I GTNNAC 2 cut(s) 27, 121
Hpy99I CGWCG 1 cut(s) 629
HpyAV CCTTC 2 cut(s) 374, 730
HpyCH4III ACNGT 1 cut(s) 657
HpyCH4IV ACGT 1 cut(s) 743
HpyCH4V TGCA 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpyF3I CTNAG 2 cut(s) 152, 348
HpySE526I ACGT 1 cut(s) 743
Hsp92I GRCGYC 1 cut(s) 743
Hsp92II CATG 3 cut(s) 68, 176, 528
Kzo9I GATC 1 cut(s) 478
LmnI GCTCC 1 cut(s) 391
Lsp1109I GCAGC 1 cut(s) 322
MaeII ACGT 1 cut(s) 743
MalI GATC 1 cut(s) 480
MboI GATC 1 cut(s) 478
MboII GAAGA 8 cut(s) 225, 379, 420, 505, 540, 644, 652, 740
MflI RGATCY 1 cut(s) 478
MluCI AATT 4 cut(s) 309, 324, 396, 439
MlyI GAGTC 1 cut(s) 577
MnlI CCTC 6 cut(s) 94, 325, 343, 602, 628, 673
MroXI GAANNNNTTC 1 cut(s) 547
MseI TTAA 3 cut(s) 323, 399, 599
MspA1I CMGCKG 1 cut(s) 449
MspI CCGG 3 cut(s) 558, 580, 668
MspR9I CCNGG 1 cut(s) 476
Mva1269I GAATGC 1 cut(s) 162
MvaI CCWGG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 391
NdeII GATC 1 cut(s) 478
NlaIII CATG 3 cut(s) 68, 176, 528
NlaIV GGNNCC 1 cut(s) 480
PagI TCATGA 1 cut(s) 64
PctI GAATGC 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 547
PfeI GAWTC 1 cut(s) 643
PfoI TCCNGGA 1 cut(s) 474
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
PshAI GACNNNNGTC 1 cut(s) 658
Psp6I CCWGG 1 cut(s) 474
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 1 cut(s) 480
PspPI GGNCC 1 cut(s) 7
PsuI RGATCY 1 cut(s) 478
PvuII CAGCTG 1 cut(s) 449
RsaI GTAC 3 cut(s) 38, 47, 171
RsaNI GTAC 3 cut(s) 37, 46, 170
SaqAI TTAA 3 cut(s) 323, 399, 599
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 1 cut(s) 478
Sau96I GGNCC 1 cut(s) 7
ScaI AGTACT 2 cut(s) 38, 47
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 1 cut(s) 476
SetI ASST 8 cut(s) 9, 63, 153, 227, 323, 408, 451, 746
SinI GGWCC 1 cut(s) 7
SmlI CTYRAG 1 cut(s) 459
SmoI CTYRAG 1 cut(s) 459
Sse9I AATT 4 cut(s) 309, 324, 396, 439
SsiI CCGC 1 cut(s) 160
StyD4I CCNGG 1 cut(s) 474
TaaI ACNGT 1 cut(s) 657
TaiI ACGT 1 cut(s) 746
TasI AATT 4 cut(s) 309, 324, 396, 439
TatI WGTACW 3 cut(s) 36, 45, 169
TfiI GAWTC 1 cut(s) 643
Tru1I TTAA 3 cut(s) 323, 399, 599
Tru9I TTAA 3 cut(s) 323, 399, 599
TscAI CASTG 1 cut(s) 511
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 4 cut(s) 8, 53, 227, 267
TspGWI ACGGA 1 cut(s) 642
TspRI CASTG 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 1 cut(s) 439
XmiI GTMKAC 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 547
ZraI GACGTC 1 cut(s) 744
ZrmI AGTACT 2 cut(s) 38, 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.