Rroxscaffold_3G00222550

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
5581591 .. 5583354
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00222550.1

Sequence Viewer

Length: 453 bp
ATGAATATGGTACATTTGCCAAGTGAATACATCTTGGATAGGTGGACAAAAAATGCAAAAGTTGGAAGAGTTTGGGATGATGATGTGGGTGATAAGTCATTGATGATGAAATATATTCAATTATCTCAACTTTCACAAGTTGTAATTGATGAGACGTCTCTTTCACCAGAAACAACAAAATATTTCACAGATGGACTCCATTTGCTTCGTCTTGGTATTAAAGAACTTCTCTCCAGTCTGGGTGTTGAGGAACTTCCATCCACAAAGAAAAGAATACCTCAGCAAATACTCATTGAAGAACCATCTCAATCAAAGACTAAAGGAAGTGGGAAGAGGTTGAAGTCATCCAAAGAAATTGCAATGAATAAGCAGAGAAACTGTGGAAAATGTGGTAAAAGTGGGCACAACATAGAAACATGTGACAAGCACAATAGTGACAATACTAATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

150

Amino Acids

16.88

Weight (kDa)

8.94

Isoelectric Point (pI)

57.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 155
AfaI GTAC 1 cut(s) 12
AflIII ACRYGT 1 cut(s) 416
AgsI TTSAA 3 cut(s) 119, 296, 340
AleI CACNNNNGTG 1 cut(s) 432
Alw26I GTCTC 2 cut(s) 146, 162
AsuHPI GGTGA 2 cut(s) 101, 156
BaeGI GKGCMC 1 cut(s) 405
BbvCI CCTCAGC 1 cut(s) 279
BccI CCATC 3 cut(s) 185, 265, 310
BcoDI GTCTC 2 cut(s) 146, 162
BpmI CTGGAG 1 cut(s) 217
Bpu10I CCTNAGC 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 366
BseGI GGATG 3 cut(s) 82, 257, 344
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 405
BsmAI GTCTC 2 cut(s) 146, 162
BsmBI CGTCTC 2 cut(s) 146, 162
Bsp1286I GDGCHC 1 cut(s) 405
BspCNI CTCAG 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 234
BssNI GRCGYC 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 380
Bst6I CTCTTC 2 cut(s) 61, 326
BstACI GRCGYC 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 3 cut(s) 82, 257, 344
BstMAI GTCTC 2 cut(s) 146, 162
BstNSI RCATGY 1 cut(s) 420
BstSLI GKGCMC 1 cut(s) 405
BtsCI GGATG 3 cut(s) 82, 257, 344
Csp6I GTAC 1 cut(s) 11
CviAII CATG 1 cut(s) 417
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 1 cut(s) 279
Eam1104I CTCTTC 2 cut(s) 61, 326
EarI CTCTTC 2 cut(s) 61, 326
Esp3I CGTCTC 2 cut(s) 146, 162
FaeI CATG 1 cut(s) 420
FaiI YATR 4 cut(s) 8, 114, 410, 418
FatI CATG 1 cut(s) 416
FokI GGATG 3 cut(s) 89, 244, 331
GsuI CTGGAG 1 cut(s) 217
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 1 cut(s) 420
HinfI GANTC 1 cut(s) 195
HphI GGTGA 2 cut(s) 101, 156
Hpy166II GTNNAC 1 cut(s) 45
Hpy8I GTNNAC 1 cut(s) 45
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 2 cut(s) 56, 359
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 155
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 1 cut(s) 420
LpnPI CCDG 3 cut(s) 180, 224, 247
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 419, 434
MboII GAAGA 3 cut(s) 78, 308, 343
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 3 cut(s) 119, 144, 354
MlyI GAGTC 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 3 cut(s) 241, 288, 327
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 432
NlaIII CATG 1 cut(s) 420
NmuCI GTSAC 2 cut(s) 419, 434
NspI RCATGY 1 cut(s) 420
OliI CACNNNNGTG 1 cut(s) 432
PciI ACATGT 1 cut(s) 416
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PscI ACATGT 1 cut(s) 416
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 432
SaqAI TTAA 1 cut(s) 219
SchI GAGTC 1 cut(s) 189
SduI GDGCHC 1 cut(s) 405
SetI ASST 4 cut(s) 44, 158, 280, 338
SgeI CNNG 9 cut(s) 33, 46, 149, 179, 224, 246, 251, 429, 436
SmiMI CAYNNNNRTG 1 cut(s) 432
Sse9I AATT 3 cut(s) 119, 144, 354
SspI AATATT 1 cut(s) 182
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 1 cut(s) 158
TasI AATT 3 cut(s) 119, 144, 354
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseFI GTSAC 2 cut(s) 419, 434
Tsp45I GTSAC 2 cut(s) 419, 434
TspDTI ATGAA 3 cut(s) 17, 122, 377
XceI RCATGY 1 cut(s) 420
ZraI GACGTC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.