Rw4G008500

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000164
Physical Location & Seq
Reverse (-)
18680553 .. 18688662
8110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G008500.1

Sequence Viewer

Length: 1395 bp
ATGGAGATTGTGGCAGGTGGTATACAAAATGTTGGATGTATTGCCAGAGATTTGAGAAACTTTGAAAGAGATTCGAGGGAAGAAGTGAAGGGACATGATGCAACTATGTTACTTGAGTACTTAGAGTCAGAAAAGGAAAAGAAGCCATCTTTTTATTTTGAAGTTGACCTAGATGAAGAAAATAGGATGACTCGTTGCTTTTGGGCTGATCCTACCTCAAAAAAAGCATATTATTTCTTTAACGATGTTGTTATGTTTGATACCACGTACAACACAAACAAATATCGCATGATATTTGCTCCAATCAGAAGCGTCAACCATCATGGCCAGACAATTGTCTTTGGTTGTGGACTTTTAAGTGATGAGAAAACTGAGTCTTTTATTTGTGGTCCACCAAAAGTTATAATTACTGATCAAGATCCAGCAATTGCAAAAGCCATCGCTCAAGTTCTTCTACTTACACTCCACCGTTTTTGTCTTTGGCATATCATGTTTAAATTTCGAGATAAGCTTGGTCCTATGATTGCTCAAAGTTATTATGGACTCTTCAAAGCCAGTGTATATAACTCCTGGACTAAAGAAGAATTTGAAGCTAGTTGGAAGAATGTTGTGCAACAAAGCAAACAAGAAAATCATGTGTGGTTGAACACAATGTATGAACTACGAAGTATGCAAAGTAGTCAAAGAGTTGAAAGTAACCATTCATTCTTCAAATCATTTGTTTTAGTGGAAAATTCTTTATTGGATTTTGCTACAAGGATTAAAAGGGGGCTTAGACAACAAAGGCATGAAGCACTGATTCGTGATCATGTTGATACTAATGAAATTCCAAAGACAAGGACTTACTATCCCATAGAAAAGCAAATGTGTGAGGTGTACACAAAAGAAATATTTTTGAGGTTTCAAGATGAGGTTGTCAAGAGTACTGCTTACTTGAAATGTGAAACTTTGAAGGAGGATGATAATGAATGCGTGTATACTGTTTTAAGGGCTGCAGATGATGAACAAAGCTGGAAATTGCGACAAATTTTTCATGACAAACAAATACTCATTGAAGAACCATCTCAATCAAAGGTTAAAGGAAGTGAGAAGAGGTTGAAGTCATCTAAAGAAATTGCAATGAATAAGAAAAGAAAATTGTTATTGGCTTGTAGCAGAAGTCTTAACAATTCTGGTCTAAACACCCAAGTAAATAACACATATACAGTAAATACAATGGTAAATTTTATAGAAACACTTTCAAATCCCAAAACAGAACATAACAAATCCAATTGTAGATCTTGCGCAGATCTGACTTCTGATCAGTTGATTGTGGGCCAAGGAATGATCAATCTAGGCTGCAGGGTTCTCTCTGCCTTAAATGGAAAAACTTTAGCACGGATCGACCTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

464

Amino Acids

53.87

Weight (kDa)

8.31

Isoelectric Point (pI)

41.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 83 - 164 5e-18 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 404
AarI CACCTGC 1 cut(s) 5
Acc16I TGCGCA 1 cut(s) 1285
Acc36I ACCTGC 1 cut(s) 5
AccI GTMKAC 2 cut(s) 22, 977
AclWI GGATC 3 cut(s) 203, 413, 1388
AcoI YGGCCR 1 cut(s) 325
AcsI RAATTY 6 cut(s) 497, 584, 733, 825, 1026, 1222
AfaI GTAC 4 cut(s) 119, 269, 878, 925
AjnI CCWGG 1 cut(s) 569
AluBI AGCT 3 cut(s) 511, 593, 1011
AluI AGCT 3 cut(s) 511, 593, 1011
AlwI GGATC 3 cut(s) 203, 413, 1388
AoxI GGCC 2 cut(s) 325, 1315
ApeKI GCWGC 2 cut(s) 992, 1338
ApoI RAATTY 6 cut(s) 497, 584, 733, 825, 1026, 1222
AspLEI GCGC 1 cut(s) 1286
AspS9I GGNCC 3 cut(s) 389, 515, 1315
AvaII GGWCC 2 cut(s) 389, 515
BalI TGGCCA 1 cut(s) 327
BbvI GCAGC 2 cut(s) 979, 1325
BccI CCATC 4 cut(s) 154, 327, 446, 1069
BciT130I CCWGG 1 cut(s) 571
BclI TGATCA 4 cut(s) 412, 805, 1300, 1326
BfaI CTAG 3 cut(s) 170, 594, 1334
BfmI CTRYAG 2 cut(s) 993, 1339
BfuAI ACCTGC 1 cut(s) 5
BglII AGATCT 2 cut(s) 1277, 1288
BisI GCNGC 2 cut(s) 993, 1339
BlsI GCNGC 2 cut(s) 994, 1340
BmcAI AGTACT 2 cut(s) 119, 925
Bme1390I CCNGG 1 cut(s) 571
Bme18I GGWCC 2 cut(s) 389, 515
BmgT120I GGNCC 3 cut(s) 389, 515, 1315
BmrFI CCNGG 1 cut(s) 571
BmsI GCATC 1 cut(s) 88
BoxI GACNNNNGTC 1 cut(s) 335
BpuEI CTTGAG 2 cut(s) 134, 429
BsaAI YACGTR 1 cut(s) 267
BsaBI GATNNNNATC 1 cut(s) 417
BsaJI CCNNGG 1 cut(s) 1318
BsaXI ACNNNNNCTCC 2 cut(s) 447, 477
Bse1I ACTGG 1 cut(s) 555
Bse3DI GCAATG 1 cut(s) 1125
Bse8I GATNNNNATC 1 cut(s) 417
BseBI CCWGG 1 cut(s) 571
BseDI CCNNGG 1 cut(s) 1318
BseGI GGATG 3 cut(s) 41, 192, 964
BseJI GATNNNNATC 1 cut(s) 417
BseMI GCAATG 1 cut(s) 1125
BseMII CTCAG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 555
BseXI GCAGC 2 cut(s) 979, 1325
BshFI GGCC 2 cut(s) 327, 1317
BslFI GGGAC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 105
BsmI GAATGC 1 cut(s) 974
BsnI GGCC 2 cut(s) 327, 1317
Bsp1407I TGTACA 1 cut(s) 876
Bsp143I GATC 9 cut(s) 208, 412, 418, 805, 1277, 1288, 1300, 1326, 1380
BspANI GGCC 2 cut(s) 327, 1317
BspCNI CTCAG 1 cut(s) 364
BspHI TCATGA 1 cut(s) 1033
BspMAI CTGCAG 2 cut(s) 997, 1343
BspMI ACCTGC 1 cut(s) 5
BspPI GGATC 3 cut(s) 203, 413, 1388
BsrDI GCAATG 1 cut(s) 1125
BsrGI TGTACA 1 cut(s) 876
BsrI ACTGG 1 cut(s) 555
BssECI CCNNGG 1 cut(s) 1318
BssMI GATC 9 cut(s) 208, 412, 418, 805, 1277, 1288, 1300, 1326, 1380
BssNAI GTATAC 2 cut(s) 23, 978
BssT1I CCWWGG 1 cut(s) 1318
Bst1107I GTATAC 2 cut(s) 23, 978
Bst2UI CCWGG 1 cut(s) 571
Bst4CI ACNGT 3 cut(s) 470, 982, 1207
Bst6I CTCTTC 2 cut(s) 551, 1085
BstAUI TGTACA 1 cut(s) 876
BstBAI YACGTR 1 cut(s) 267
BstDEI CTNAG 3 cut(s) 121, 372, 773
BstF5I GGATG 3 cut(s) 41, 192, 964
BstHHI GCGC 1 cut(s) 1286
BstKTI GATC 9 cut(s) 211, 415, 421, 808, 1280, 1291, 1303, 1329, 1383
BstMBI GATC 9 cut(s) 208, 412, 418, 805, 1277, 1288, 1300, 1326, 1380
BstNI CCWGG 1 cut(s) 571
BstPAI GACNNNNGTC 1 cut(s) 335
BstSCI CCNGG 1 cut(s) 569
BstSFI CTRYAG 2 cut(s) 993, 1339
BstV1I GCAGC 2 cut(s) 979, 1325
BstX2I RGATCY 3 cut(s) 418, 1277, 1288
BstYI RGATCY 3 cut(s) 418, 1277, 1288
BstZ17I GTATAC 2 cut(s) 23, 978
BsuRI GGCC 2 cut(s) 327, 1317
BtgZI GCGATG 1 cut(s) 424
BtsCI GGATG 3 cut(s) 41, 192, 964
BtsIMutI CAGTG 2 cut(s) 562, 794
BveI ACCTGC 1 cut(s) 5
CciI TCATGA 1 cut(s) 1033
CfoI GCGC 1 cut(s) 1286
Cfr13I GGNCC 3 cut(s) 389, 515, 1315
CseI GACGC 1 cut(s) 301
Csp6I GTAC 4 cut(s) 118, 268, 877, 924
CspCI CAANNNNNGTGG 2 cut(s) 455, 490
CviAII CATG 8 cut(s) 95, 289, 323, 490, 635, 788, 809, 1034
CviQI GTAC 4 cut(s) 118, 268, 877, 924
DdeI CTNAG 3 cut(s) 121, 372, 773
DpnI GATC 9 cut(s) 210, 414, 420, 807, 1279, 1290, 1302, 1328, 1382
DpnII GATC 9 cut(s) 208, 412, 418, 805, 1277, 1288, 1300, 1326, 1380
DraI TTTAAA 1 cut(s) 496
EaeI YGGCCR 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 551, 1085
EarI CTCTTC 2 cut(s) 551, 1085
Eco130I CCWWGG 1 cut(s) 1318
Eco47I GGWCC 2 cut(s) 389, 515
EcoRII CCWGG 1 cut(s) 569
EcoT14I CCWWGG 1 cut(s) 1318
ErhI CCWWGG 1 cut(s) 1318
FaeI CATG 8 cut(s) 98, 292, 326, 493, 638, 791, 812, 1037
FaqI GGGAC 1 cut(s) 105
FatI CATG 8 cut(s) 94, 288, 322, 489, 634, 787, 808, 1033
FbaI TGATCA 4 cut(s) 412, 805, 1300, 1326
FblI GTMKAC 2 cut(s) 22, 977
Fnu4HI GCNGC 2 cut(s) 993, 1339
FokI GGATG 3 cut(s) 48, 199, 971
Fsp4HI GCNGC 2 cut(s) 993, 1339
FspBI CTAG 3 cut(s) 170, 594, 1334
FspI TGCGCA 1 cut(s) 1285
GlaI GCGC 1 cut(s) 1285
GluI GCNGC 2 cut(s) 993, 1339
HaeIII GGCC 2 cut(s) 327, 1317
HgaI GACGC 1 cut(s) 301
HhaI GCGC 1 cut(s) 1286
Hin1II CATG 8 cut(s) 98, 292, 326, 493, 638, 791, 812, 1037
Hin6I GCGC 1 cut(s) 1284
HinP1I GCGC 1 cut(s) 1284
HincII GTYRAC 2 cut(s) 166, 316
HindII GTYRAC 2 cut(s) 166, 316
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 6 cut(s) 71, 125, 190, 374, 543, 799
Hpy166II GTNNAC 8 cut(s) 23, 166, 316, 350, 392, 877, 879, 978
Hpy188I TCNGA 4 cut(s) 130, 308, 1293, 1300
Hpy188III TCNNGA 6 cut(s) 416, 503, 803, 905, 919, 1034
Hpy8I GTNNAC 8 cut(s) 23, 166, 316, 350, 392, 877, 879, 978
HpyAV CCTTC 2 cut(s) 82, 946
HpyCH4III ACNGT 3 cut(s) 470, 982, 1207
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 7 cut(s) 101, 431, 613, 673, 995, 1118, 1341
HpyF3I CTNAG 3 cut(s) 121, 372, 773
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 8 cut(s) 98, 292, 326, 493, 638, 791, 812, 1037
HspAI GCGC 1 cut(s) 1284
Ksp22I TGATCA 4 cut(s) 412, 805, 1300, 1326
Kzo9I GATC 9 cut(s) 208, 412, 418, 805, 1277, 1288, 1300, 1326, 1380
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 9 cut(s) 58, 341, 435, 556, 568, 583, 997, 1158, 1327
Lsp1109I GCAGC 2 cut(s) 979, 1325
LweI GCATC 1 cut(s) 88
MaeI CTAG 3 cut(s) 170, 594, 1334
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 2 cut(s) 108, 695
MalI GATC 9 cut(s) 210, 414, 420, 807, 1279, 1290, 1302, 1328, 1382
MboI GATC 9 cut(s) 208, 412, 418, 805, 1277, 1288, 1300, 1326, 1380
MboII GAAGA 9 cut(s) 92, 188, 443, 538, 593, 613, 700, 1067, 1102
MfeI CAATTG 3 cut(s) 333, 426, 1270
MflI RGATCY 3 cut(s) 418, 1277, 1288
MlsI TGGCCA 1 cut(s) 327
MluNI TGGCCA 1 cut(s) 327
MlyI GAGTC 4 cut(s) 134, 184, 383, 537
MmeI TCCRAC 2 cut(s) 13, 578
MnlI CCTC 7 cut(s) 69, 226, 865, 891, 904, 949, 1086
Mox20I TGGCCA 1 cut(s) 327
MscI TGGCCA 1 cut(s) 327
Msp20I TGGCCA 1 cut(s) 327
MspR9I CCNGG 1 cut(s) 571
MunI CAATTG 3 cut(s) 333, 426, 1270
Mva1269I GAATGC 1 cut(s) 974
MvaI CCWGG 1 cut(s) 571
NdeII GATC 9 cut(s) 208, 412, 418, 805, 1277, 1288, 1300, 1326, 1380
NlaIII CATG 8 cut(s) 98, 292, 326, 493, 638, 791, 812, 1037
NsbI TGCGCA 1 cut(s) 1285
PacI TTAATTAA 1 cut(s) 1393
PagI TCATGA 1 cut(s) 1033
PaqCI CACCTGC 1 cut(s) 5
PctI GAATGC 1 cut(s) 974
PfeI GAWTC 2 cut(s) 71, 799
PfoI TCCNGGA 1 cut(s) 569
PkrI GCNGC 2 cut(s) 994, 1340
PleI GAGTC 4 cut(s) 133, 184, 382, 537
PpsI GAGTC 4 cut(s) 133, 184, 382, 537
Ppu21I YACGTR 1 cut(s) 267
PshAI GACNNNNGTC 1 cut(s) 335
PsiI TTATAA 1 cut(s) 404
Psp6I CCWGG 1 cut(s) 569
PspGI CCWGG 1 cut(s) 569
PspPI GGNCC 3 cut(s) 389, 515, 1315
PstI CTGCAG 2 cut(s) 997, 1343
PsuI RGATCY 3 cut(s) 418, 1277, 1288
RsaI GTAC 4 cut(s) 119, 269, 878, 925
RsaNI GTAC 4 cut(s) 118, 268, 877, 924
SatI GCNGC 2 cut(s) 993, 1339
Sau3AI GATC 9 cut(s) 208, 412, 418, 805, 1277, 1288, 1300, 1326, 1380
Sau96I GGNCC 3 cut(s) 389, 515, 1315
ScaI AGTACT 2 cut(s) 119, 925
SchI GAGTC 4 cut(s) 134, 184, 383, 537
ScrFI CCNGG 1 cut(s) 571
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 2 cut(s) 993, 1339
SinI GGWCC 2 cut(s) 389, 515
SmlI CTYRAG 2 cut(s) 113, 444
SmoI CTYRAG 2 cut(s) 113, 444
SspI AATATT 1 cut(s) 891
SspMI CTAG 3 cut(s) 170, 594, 1334
StyD4I CCNGG 1 cut(s) 569
StyI CCWWGG 1 cut(s) 1318
TaaI ACNGT 3 cut(s) 470, 982, 1207
TaiI ACGT 1 cut(s) 269
TaqI TCGA 3 cut(s) 74, 502, 1383
TatI WGTACW 3 cut(s) 117, 876, 923
TfiI GAWTC 2 cut(s) 71, 799
TscAI CASTG 2 cut(s) 562, 801
TseI GCWGC 2 cut(s) 992, 1338
TspDTI ATGAA 9 cut(s) 189, 672, 693, 804, 837, 981, 1017, 1022, 1136
TspGWI ACGGA 1 cut(s) 1393
TspRI CASTG 2 cut(s) 562, 801
VpaK11BI GGWCC 2 cut(s) 389, 515
XapI RAATTY 6 cut(s) 497, 584, 733, 825, 1026, 1222
XmiI GTMKAC 2 cut(s) 22, 977
XspI CTAG 3 cut(s) 170, 594, 1334
ZrmI AGTACT 2 cut(s) 119, 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.