Rorug04G0027300

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000164
Physical Location & Seq
Forward (+)
3771089 .. 3795381
24293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0027300.1

Sequence Viewer

Length: 3243 bp
ATGGCTTCTCTGACCAACGAAGCAGTAGCCAGTTCTTCATCTTCTTCTCTCCAACTTTCTTCTACTGATTACCAAAATCATTACACATACGAGGTTTTCCTGAGTTTCCGAGGCTATGATTTTACAGATCATTTGTACAACGCTTTGTGTCTGAGGGGAATTAAGACCTTCAGAGATGATAAGCTTAGCAGAGGAGAAGACATATCACAAGAGCTCCTCAAAGCAATTGAGGAGTCCAGAGTTTCAATCGTCGTCTTTTCTCAAAATTATGCTTCCTCAAGGTGGTGCTTAGATGAACTGGTCAAGATACTTGAATGCAGAGAATCAAAAAGACAAGTGGTCAGACCGGTTTTCAACAAGGTGGATCCCTCAGATGTACGACACCAAAGATGTGCTTTCGGTGACGCATTTGCTAAAATTGATCAATGCAAATACAAGGATAGCATGGATAAATGGAAGGCAACTCTCAAGGAAGCAGCAGATTTGTCTGGATTGACTTTCGGGAAGGGCCGGTACGAGACTGAATTTATCAACGACATTGTTGGGGAGTTGTCTACCCGTGTAGTAAACCCTTCATGTGAGTGGCACGTTGCTGAATATCCAATTGGATTAGAGTCTTGTATACAAGATGTAGACAGTCTTTTAAAAGGCGAGGAAAATATTTTTCGCATGGTGGGCATATGGGGGACTGGTGGAATAGGAAAGACCACAATTGCAAAAGCTGTGTTTAATTCAATTCGCCATAAGTTTGAAGGTAACTGTTTCTTGGCGGATGTTAGATCAAAAAATTTTAGATCAAAAGGCCTAGCCCAACTGCAAGAGACACTTTTGTCTCATATTTTAAACTCAACTTTGCCGGTGAGCAGTGTTGATCAAGGAGTCAGTTTTATAAAGACAAGGATGCGACATAAAAAAGTTCTCATAATCCTTGATGACGTGAGTCATTCTAGTCAATTACAGAACTTAGTTCCATCCCCTGATTGTTTTGGGCCGGGCAGTAAAATTCTCATAACAACAAGAGATAAACGTTGGCTAATTGCTCATCAAGTTGATGAAGTATACGAGGTCAAAATGTTAGATGATGATCAATCTTTGGAGTTGTTTAGCTTGAATGCATTCAAAAGCAATGGACCTCCAGGCGATTATCTAGAACTTGCACAACGTGCAGTACGCTATGCCCAGGGCCTTCCATTAGCTTTGATAGTTTTAGGCTCTCATCTATTTCGTAGAAGCCAAGATGAGTGGGAAGCTACATTAGATAGTTGTAGGGGAGAAGATCCCCACAGAGAGATAAGAGACGTGCTCAAACTAAGTTATGATGCTCTAGGACGAGATTTAAAAGAACTATTTCTTGATATCGCTTGTTTCTTTAAAGGTAAGCATGTAGACCATGTGAAACCAATACTAGAAGCTTGCTACGACCACAAAACAATGGTGATTGGTATTGCACAACTGCAAGAAAAAGCCTTGATAAGAATTGACAAATTTGATCAGATTTGGATGCATGACTTGATAGAAGAAATGGGTAAAGACATAATGTATCAGGAGTCACCTGATGAACCTGGGAAACGCAGCAGAGTCTGGAGTGAAGAAGATGTCTACGACGTTCTAACAAAGAATACAGGTACAAATGAAGTTATAGGCATTCAGGTCCGGTGGCTATCATCTACAATATCTTTGAATGCTAAAAGCTTTTCAGAGATGAGGAATCTTAGATATATTTCTATGAGAGGAACATCCTTTTCTGGAGATATTGATTATCTCTCCGACCAGTTGAGGTGGCTCGATTGGCAAGAATGTCCGTTGCAATGTTTTCCATCTGATTTTGAAGCAAACAAACTTGTGAAACTCAACATTAGTAAAAGCAAAATCAGACGACTATGGAAGGGACGTAAGAATTTTTCAAGGCTAACATGTATGAATTTAAGTGACTGTGAATCCCTAAAGGAACTCCCAGACTTCTGTGGAATTCCTAACTTGAAAGAGTTGAAACTATATGGATGTATCAGTTTAGTTGCGGTTCCTGATTTTGTTGGATTGCTTGATAAGCTTGTTACCTTGGATGTTGGCCGTTGCTCTAACATTATGTTTCCAAGAAAAATCAACTTGAAATCTGTAGAAACAATCTCTATTAGCTATTGCAAGCTTGAAGAATTTTCAGAATTTGGGGAAGAGATGGTTTCCTTGAGAAGTTTGAATCTAATAAACACTTGCATTAAAGAATTGCATCCGTCCATTACAAGGCTTATTAGGCTGGAAGAGTTGGACCTAGTGAACTGTCAAAATCTTACAACCCTGCCGTATAATATTTATGAGTTGCACAATCTAAAGACTCTTTATGCGAGTGGATGCTCAAAACTGGCTACATTTCCAAAAATTCCAGTAAATATGGATTCCTTGAGACAACTCTCTCTTAAAGGCAGTGACATAAGAGAATTGGATGAGTCAATTGAAAATCTCATTGGGCTTGAACGGTTGGATCTTCGTGATTGCAAAAATCTCACAACTCTACCGTGCAGCATTTATGGGTTGCAAAATTTAATGGACCTTTATCTTCATAACTGCTCAAAACTCGCTAGATTTCCAACAAATACCAAAAGTTTGAATGTCGATGGTTGCTCACTATCACTTCCCAAGCTAAAGTGCTTGCATATGGGAGGATGCAGTTTATTATCAGATTGTGATTTCCTGATGACTCTTGATTGCTTGGAAACATTAGAGGAACTTAGTCTGTCAAGAAGCAATATTAGAGTCCGAGGAATTCCGGAGCTTCCACCAAACGTTAAACCACACACGTGGCTGTCAGATGAAGATGATTGTGAATCACTGGACACAGAGGCGGCGTGGCCGTCAATTGAAGAGATTGTCGACCAGTGGCTGTCTCACAACTCTCCGGAGCTTCCACCAAACGTTAAACCACACACGTGGCCGTCAGATGAAGATGATTGTGAATCACTGGACACAGAGGCGGCGTCGCCGTCAATTGAAGAGCCAACTCCGTCGTCATGGCTTTCTTTGTCTTCCGAAACTCCGAAACGACACCGCAGCGCGGAAGAACCATCACCAACACCAGTGAATCCTCCGAAACGACAACGCACTGCCGCCGGGGGGGGGGGGGGGGGCAAGCACCGGTGGTCCACTTTGCATATGAAATGGCTATCTCCCCAGTCCCCATGTTCCCTGACCTGCATAGCTCCCGTCACTCAACCACTTCCATCGATGAGAACAAAAGAGGCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

1080

Amino Acids

122.29

Weight (kDa)

5.66

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 30 - 188 2.6e-45 TIR domain
TIR_2 PF13676 32 - 123 1.9e-13 TIR domain
NB-ARC PF00931 213 - 375 1.9e-20 NB-ARC domain
WHD_ROQ1 PF23282 447 - 515 2.8e-16 Disease resistance protein Roq1-like, winged-helix domain
LRR_13 PF23286 703 - 787 1.8e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 725 - 804 1.9e-08 Leucine-rich repeat region
LRR_13 PF23286 784 - 916 1e-11 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 799 - 910 8.7e-08 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 890
AasI GACNNNNNNGTC 1 cut(s) 829
Acc36I ACCTGC 1 cut(s) 3194
AccI GTMKAC 7 cut(s) 554, 622, 633, 1059, 1386, 1599, 2868
AccII CGCG 1 cut(s) 3050
AccIII TCCGGA 2 cut(s) 2764, 2893
AciI CCGC 7 cut(s) 770, 2018, 2840, 2969, 3043, 3050, 3102
AclI AACGTT 3 cut(s) 1027, 2781, 2910
AclWI GGATC 4 cut(s) 359, 372, 1271, 2487
AcoI YGGCCR 3 cut(s) 2068, 2846, 2927
AcuI CTGAAG 1 cut(s) 154
AcvI CACGTG 2 cut(s) 2796, 2925
AcyI GRCGYC 1 cut(s) 2972
AdeI CACNNNGTG 1 cut(s) 1163
AfaI GTAC 5 cut(s) 137, 378, 515, 1170, 1627
AfiI CCNNNNNNNGG 5 cut(s) 282, 2241, 3049, 3108, 3111
AflIII ACRYGT 3 cut(s) 1913, 2793, 2922
AgeI ACCGGT 2 cut(s) 346, 3129
AhdI GACNNNNNGTC 1 cut(s) 338
AjiI CACGTC 2 cut(s) 937, 1300
AjnI CCWGG 3 cut(s) 1135, 1179, 1561
AjuI GAANNNNNNNTTGG 4 cut(s) 588, 620, 2445, 2477
AleI CACNNNNGTG 2 cut(s) 2794, 2923
Alw21I GWGCWC 2 cut(s) 216, 1305
Alw26I GTCTC 6 cut(s) 512, 815, 837, 1290, 2395, 2886
AlwI GGATC 4 cut(s) 359, 372, 1271, 2487
AlwNI CAGNNNCTG 2 cut(s) 1581, 2878
Aor13HI TCCGGA 2 cut(s) 2764, 2893
AoxI GGCC 8 cut(s) 508, 802, 989, 1183, 2068, 2846, 2927, 3234
ApeKI GCWGC 4 cut(s) 476, 1572, 2517, 3045
AsiGI ACCGGT 2 cut(s) 346, 3129
Asp700I GAANNNNTTC 2 cut(s) 1115, 1347
AspLEI GCGC 1 cut(s) 3050
AspS9I GGNCC 8 cut(s) 508, 989, 1130, 1183, 1651, 2266, 2545, 3135
AsuC2I CCSGG 2 cut(s) 993, 3106
AsuHPI GGTGA 5 cut(s) 413, 871, 1447, 1542, 3054
AvaII GGWCC 5 cut(s) 1130, 1651, 2266, 2545, 3135
BamHI GGATCC 1 cut(s) 364
BanII GRGCYC 1 cut(s) 216
BarI GAAGNNNNNNTAC 2 cut(s) 497, 529
BbrPI CACGTG 2 cut(s) 2796, 2925
BbsI GAAGAC 2 cut(s) 204, 3012
Bbv12I GWGCWC 2 cut(s) 216, 1305
BbvI GCAGC 4 cut(s) 488, 1584, 2529, 3057
BccI CCATC 6 cut(s) 979, 1825, 2170, 2606, 3067, 3223
BceAI ACGGC 5 cut(s) 2055, 2284, 2833, 2914, 2962
BciT130I CCWGG 3 cut(s) 1137, 1181, 1563
BclI TGATCA 4 cut(s) 421, 871, 1084, 1489
BcnI CCSGG 2 cut(s) 993, 3106
BcoDI GTCTC 6 cut(s) 512, 815, 837, 1290, 2395, 2886
BfaI CTAG 7 cut(s) 806, 948, 1148, 1325, 1406, 2270, 2577
BfmI CTRYAG 1 cut(s) 2115
BfuAI ACCTGC 1 cut(s) 3194
BisI GCNGC 7 cut(s) 477, 1573, 2518, 2841, 2970, 3046, 3102
BlpI GCTNAGC 1 cut(s) 185
BlsI GCNGC 7 cut(s) 478, 1574, 2519, 2842, 2971, 3047, 3103
Bme1390I CCNGG 5 cut(s) 993, 1137, 1181, 1563, 3106
Bme18I GGWCC 5 cut(s) 1130, 1651, 2266, 2545, 3135
BmeRI GACNNNNNGTC 1 cut(s) 338
BmgBI CACGTC 2 cut(s) 937, 1300
BmgT120I GGNCC 8 cut(s) 508, 989, 1130, 1183, 1651, 2266, 2545, 3135
BmiI GGNNCC 2 cut(s) 366, 2022
BmrFI CCNGG 5 cut(s) 993, 1137, 1181, 1563, 3106
BmrI ACTGGG 1 cut(s) 3160
BmsI GCATC 6 cut(s) 891, 1309, 1491, 2236, 2339, 2651
BmuI ACTGGG 1 cut(s) 3160
BoxI GACNNNNGTC 1 cut(s) 939
BpiI GAAGAC 2 cut(s) 204, 3012
BplI GAGNNNNNCTC 2 cut(s) 1287, 1319
BpmI CTGGAG 3 cut(s) 1119, 1603, 1767
Bpu1102I GCTNAGC 1 cut(s) 185
BpuEI CTTGAG 4 cut(s) 262, 452, 2206, 2419
BpuMI CCSGG 2 cut(s) 993, 3106
Bsa29I ATCGAT 1 cut(s) 3218
BsaAI YACGTR 2 cut(s) 2796, 2925
BsaBI GATNNNNATC 1 cut(s) 1083
BsaHI GRCGYC 1 cut(s) 2972
BsaJI CCNNGG 7 cut(s) 109, 1179, 1180, 1562, 2058, 2755, 3105
BsaWI WCCGGW 5 cut(s) 346, 1653, 2764, 2893, 3129
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 5 cut(s) 282, 2241, 3049, 3108, 3111
Bse118I RCCGGY 4 cut(s) 346, 510, 856, 3129
Bse3DI GCAATG 2 cut(s) 1132, 1814
Bse8I GATNNNNATC 1 cut(s) 1083
BseAI TCCGGA 2 cut(s) 2764, 2893
BseBI CCWGG 3 cut(s) 1137, 1181, 1563
BseCI ATCGAT 1 cut(s) 3218
BseDI CCNNGG 7 cut(s) 109, 1179, 1180, 1562, 2058, 2755, 3105
BseJI GATNNNNATC 1 cut(s) 1083
BseLI CCNNNNNNNGG 5 cut(s) 282, 2241, 3049, 3108, 3111
BseMI GCAATG 2 cut(s) 1132, 1814
BseMII CTCAG 3 cut(s) 92, 143, 384
BseRI GAGGAG 3 cut(s) 206, 207, 245
BseXI GCAGC 4 cut(s) 488, 1584, 2529, 3057
BsgI GTGCAG 2 cut(s) 1185, 2536
Bsh1236I CGCG 1 cut(s) 3050
BshFI GGCC 8 cut(s) 510, 804, 991, 1185, 2070, 2848, 2929, 3236
BshTI ACCGGT 2 cut(s) 346, 3129
BshVI ATCGAT 1 cut(s) 3218
BsiHKAI GWGCWC 2 cut(s) 216, 1305
BsiSI CCGG 9 cut(s) 347, 511, 857, 992, 1654, 2765, 2894, 3105, 3130
BslFI GGGAC 3 cut(s) 700, 1902, 3154
BslI CCNNNNNNNGG 5 cut(s) 282, 2241, 3049, 3108, 3111
BsmAI GTCTC 6 cut(s) 512, 815, 837, 1290, 2395, 2886
BsmBI CGTCTC 1 cut(s) 1290
BsmFI GGGAC 3 cut(s) 700, 1902, 3154
BsmI GAATGC 5 cut(s) 320, 1115, 1117, 1644, 1687
BsnI GGCC 8 cut(s) 510, 804, 991, 1185, 2070, 2848, 2929, 3236
Bsp1286I GDGCHC 2 cut(s) 216, 1305
Bsp13I TCCGGA 2 cut(s) 2764, 2893
Bsp1407I TGTACA 1 cut(s) 135
Bsp1720I GCTNAGC 1 cut(s) 185
BspACI CCGC 7 cut(s) 770, 2018, 2840, 2969, 3043, 3050, 3102
BspANI GGCC 8 cut(s) 510, 804, 991, 1185, 2070, 2848, 2929, 3236
BspCNI CTCAG 3 cut(s) 93, 144, 383
BspDI ATCGAT 1 cut(s) 3218
BspEI TCCGGA 2 cut(s) 2764, 2893
BspFNI CGCG 1 cut(s) 3050
BspLI GGNNCC 2 cut(s) 366, 2022
BspMI ACCTGC 1 cut(s) 3194
BspPI GGATC 4 cut(s) 359, 372, 1271, 2487
BspQI GCTCTTC 1 cut(s) 2982
BsrDI GCAATG 2 cut(s) 1132, 1814
BsrFI RCCGGY 4 cut(s) 346, 510, 856, 3129
BsrGI TGTACA 1 cut(s) 135
BssAI RCCGGY 4 cut(s) 346, 510, 856, 3129
BssECI CCNNGG 7 cut(s) 109, 1179, 1180, 1562, 2058, 2755, 3105
BssNAI GTATAC 2 cut(s) 623, 1060
BssNI GRCGYC 1 cut(s) 2972
BssT1I CCWWGG 1 cut(s) 2058
Bst1107I GTATAC 2 cut(s) 623, 1060
Bst2UI CCWGG 3 cut(s) 1137, 1181, 1563
Bst4CI ACNGT 6 cut(s) 638, 761, 1934, 2279, 2475, 2514
Bst6I CTCTTC 4 cut(s) 2166, 2253, 2853, 2982
BstACI GRCGYC 1 cut(s) 2972
BstAPI GCANNNNNTGC 1 cut(s) 1163
BstAUI TGTACA 1 cut(s) 135
BstBAI YACGTR 2 cut(s) 2796, 2925
BstC8I GCNNGC 4 cut(s) 1414, 2144, 2648, 3125
BstDEI CTNAG 9 cut(s) 101, 152, 185, 289, 370, 964, 1310, 1712, 2726
BstFNI CGCG 1 cut(s) 3050
BstHHI GCGC 1 cut(s) 3050
BstMAI GTCTC 6 cut(s) 512, 815, 837, 1290, 2395, 2886
BstMWI GCNNNNNNNGC 5 cut(s) 675, 1163, 1789, 2047, 2251
BstNI CCWGG 3 cut(s) 1137, 1181, 1563
BstNSI RCATGY 2 cut(s) 1385, 1917
BstPAI GACNNNNGTC 1 cut(s) 939
BstSCI CCNGG 5 cut(s) 991, 1135, 1179, 1561, 3104
BstSFI CTRYAG 1 cut(s) 2115
BstUI CGCG 1 cut(s) 3050
BstV1I GCAGC 4 cut(s) 488, 1584, 2529, 3057
BstV2I GAAGAC 2 cut(s) 204, 3012
BstX2I RGATCY 3 cut(s) 364, 1276, 2479
BstXI CCANNNNNNTGG 2 cut(s) 2796, 2925
BstYI RGATCY 3 cut(s) 364, 1276, 2479
BstZ17I GTATAC 2 cut(s) 623, 1060
Bsu15I ATCGAT 1 cut(s) 3218
BsuRI GGCC 8 cut(s) 510, 804, 991, 1185, 2070, 2848, 2929, 3236
BsuTUI ATCGAT 1 cut(s) 3218
BtrI CACGTC 2 cut(s) 937, 1300
BtsI GCAGTG 3 cut(s) 871, 2428, 3096
BtsIMutI CAGTG 7 cut(s) 871, 2428, 2825, 2879, 2954, 3078, 3096
BveI ACCTGC 1 cut(s) 3194
Cac8I GCNNGC 4 cut(s) 1414, 2144, 2648, 3125
CaiI CAGNNNCTG 2 cut(s) 1581, 2878
CfoI GCGC 1 cut(s) 3050
Cfr10I RCCGGY 4 cut(s) 346, 510, 856, 3129
Cfr13I GGNCC 8 cut(s) 508, 989, 1130, 1183, 1651, 2266, 2545, 3135
ClaI ATCGAT 1 cut(s) 3218
CseI GACGC 2 cut(s) 413, 2961
Csp6I GTAC 5 cut(s) 136, 377, 514, 1169, 1626
CspAI ACCGGT 2 cut(s) 346, 3129
CspCI CAANNNNNGTGG 2 cut(s) 1223, 1258
CviAII CATG 9 cut(s) 445, 576, 670, 1382, 1391, 1505, 1914, 3006, 3174
CviQI GTAC 5 cut(s) 136, 377, 514, 1169, 1626
DdeI CTNAG 9 cut(s) 101, 152, 185, 289, 370, 964, 1310, 1712, 2726
DraI TTTAAA 4 cut(s) 645, 843, 1338, 1372
DraIII CACNNNGTG 1 cut(s) 1163
DrdI GACNNNNNNGTC 1 cut(s) 829
DriI GACNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 829
EaeI YGGCCR 3 cut(s) 2068, 2846, 2927
Eam1104I CTCTTC 4 cut(s) 2166, 2253, 2853, 2982
Eam1105I GACNNNNNGTC 1 cut(s) 338
EarI CTCTTC 4 cut(s) 2166, 2253, 2853, 2982
EciI GGCGGA 1 cut(s) 785
Ecl136II GAGCTC 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 2058
Eco147I AGGCCT 2 cut(s) 804, 3236
Eco24I GRGCYC 1 cut(s) 216
Eco32I GATATC 1 cut(s) 1357
Eco47I GGWCC 5 cut(s) 1130, 1651, 2266, 2545, 3135
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 154
Eco72I CACGTG 2 cut(s) 2796, 2925
EcoICRI GAGCTC 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 1183
EcoRI GAATTC 2 cut(s) 1968, 2760
EcoRII CCWGG 3 cut(s) 1135, 1179, 1561
EcoRV GATATC 1 cut(s) 1357
EcoT14I CCWWGG 1 cut(s) 2058
EcoT22I ATGCAT 2 cut(s) 1117, 1506
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 2058
Esp3I CGTCTC 1 cut(s) 1290
FaeI CATG 9 cut(s) 448, 579, 673, 1385, 1394, 1508, 1917, 3009, 3177
FalI AAGNNNNNCTT 4 cut(s) 379, 411, 810, 842
FaqI GGGAC 3 cut(s) 700, 1902, 3154
FatI CATG 9 cut(s) 444, 575, 669, 1381, 1390, 1504, 1913, 3005, 3173
FauNDI CATATG 3 cut(s) 680, 2652, 3147
FbaI TGATCA 4 cut(s) 421, 871, 1084, 1489
FblI GTMKAC 7 cut(s) 554, 622, 633, 1059, 1386, 1599, 2868
Fnu4HI GCNGC 7 cut(s) 477, 1573, 2518, 2841, 2970, 3046, 3102
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 7 cut(s) 477, 1573, 2518, 2841, 2970, 3046, 3102
FspBI CTAG 7 cut(s) 806, 948, 1148, 1325, 1406, 2270, 2577
GlaI GCGC 1 cut(s) 3049
GluI GCNGC 7 cut(s) 477, 1573, 2518, 2841, 2970, 3046, 3102
GsuI CTGGAG 3 cut(s) 1119, 1603, 1767
HaeIII GGCC 8 cut(s) 510, 804, 991, 1185, 2070, 2848, 2929, 3236
HapII CCGG 9 cut(s) 347, 511, 857, 992, 1654, 2765, 2894, 3105, 3130
HgaI GACGC 2 cut(s) 413, 2961
HhaI GCGC 1 cut(s) 3050
Hin1I GRCGYC 1 cut(s) 2972
Hin1II CATG 9 cut(s) 448, 579, 673, 1385, 1394, 1508, 1917, 3009, 3177
Hin6I GCGC 1 cut(s) 3048
HinP1I GCGC 1 cut(s) 3048
HincII GTYRAC 1 cut(s) 2869
HindII GTYRAC 1 cut(s) 2869
HindIII AAGCTT 5 cut(s) 182, 1410, 1690, 2048, 2144
HpaII CCGG 9 cut(s) 347, 511, 857, 992, 1654, 2765, 2894, 3105, 3130
HphI GGTGA 5 cut(s) 413, 871, 1447, 1542, 3054
Hpy99I CGWCG 4 cut(s) 254, 1607, 2977, 3004
HpyAV CCTTC 7 cut(s) 178, 451, 499, 582, 746, 1196, 1879
HpyCH4III ACNGT 6 cut(s) 638, 761, 1934, 2279, 2475, 2514
HpyF10VI GCNNNNNNNGC 5 cut(s) 675, 1163, 1789, 2047, 2251
HpyF3I CTNAG 9 cut(s) 101, 152, 185, 289, 370, 964, 1310, 1712, 2726
Hsp92I GRCGYC 1 cut(s) 2972
Hsp92II CATG 9 cut(s) 448, 579, 673, 1385, 1394, 1508, 1917, 3009, 3177
HspAI GCGC 1 cut(s) 3048
Kpn2I TCCGGA 2 cut(s) 2764, 2893
Ksp22I TGATCA 4 cut(s) 421, 871, 1084, 1489
LguI GCTCTTC 1 cut(s) 2982
LmnI GCTCC 4 cut(s) 219, 2767, 2896, 3199
Lsp1109I GCAGC 4 cut(s) 488, 1584, 2529, 3057
LweI GCATC 6 cut(s) 891, 1309, 1491, 2236, 2339, 2651
MaeI CTAG 7 cut(s) 806, 948, 1148, 1325, 1406, 2270, 2577
MaeIII GTNAC 7 cut(s) 401, 755, 1548, 1928, 2053, 2423, 3199
MfeI CAATTG 6 cut(s) 225, 603, 711, 2448, 2853, 2982
MflI RGATCY 3 cut(s) 364, 1276, 2479
MhlI GDGCHC 2 cut(s) 216, 1305
MmeI TCCRAC 6 cut(s) 76, 1791, 2014, 2244, 2457, 2609
Mph1103I ATGCAT 2 cut(s) 1117, 1506
MroI TCCGGA 2 cut(s) 2764, 2893
MroXI GAANNNNTTC 2 cut(s) 1115, 1347
MslI CAYNNNNRTG 3 cut(s) 580, 2794, 2923
MspI CCGG 9 cut(s) 347, 511, 857, 992, 1654, 2765, 2894, 3105, 3130
MspR9I CCNGG 5 cut(s) 993, 1137, 1181, 1563, 3106
MunI CAATTG 6 cut(s) 225, 603, 711, 2448, 2853, 2982
Mva1269I GAATGC 5 cut(s) 320, 1115, 1117, 1644, 1687
MvaI CCWGG 3 cut(s) 1137, 1181, 1563
MvnI CGCG 1 cut(s) 3050
MwoI GCNNNNNNNGC 5 cut(s) 675, 1163, 1789, 2047, 2251
NciI CCSGG 2 cut(s) 993, 3106
NdeI CATATG 3 cut(s) 680, 2652, 3147
NlaIII CATG 9 cut(s) 448, 579, 673, 1385, 1394, 1508, 1917, 3009, 3177
NlaIV GGNNCC 2 cut(s) 366, 2022
NmuCI GTSAC 5 cut(s) 401, 1548, 1928, 2423, 3199
NsiI ATGCAT 2 cut(s) 1117, 1506
NspI RCATGY 2 cut(s) 1385, 1917
OliI CACNNNNGTG 2 cut(s) 2794, 2923
PasI CCCWGGG 1 cut(s) 1180
PceI AGGCCT 2 cut(s) 804, 3236
PciI ACATGT 1 cut(s) 1913
PciSI GCTCTTC 1 cut(s) 2982
PctI GAATGC 5 cut(s) 320, 1115, 1117, 1644, 1687
PdmI GAANNNNTTC 2 cut(s) 1115, 1347
PfeI GAWTC 8 cut(s) 323, 1708, 1937, 2197, 2393, 2822, 2951, 3076
PinAI ACCGGT 2 cut(s) 346, 3129
PkrI GCNGC 7 cut(s) 478, 1574, 2519, 2842, 2971, 3047, 3103
PmaCI CACGTG 2 cut(s) 2796, 2925
PmlI CACGTG 2 cut(s) 2796, 2925
Ppu21I YACGTR 2 cut(s) 2796, 2925
PscI ACATGT 1 cut(s) 1913
PshAI GACNNNNGTC 1 cut(s) 939
PsiI TTATAA 1 cut(s) 890
Psp124BI GAGCTC 1 cut(s) 216
Psp1406I AACGTT 3 cut(s) 1027, 2781, 2910
Psp6I CCWGG 3 cut(s) 1135, 1179, 1561
PspCI CACGTG 2 cut(s) 2796, 2925
PspGI CCWGG 3 cut(s) 1135, 1179, 1561
PspN4I GGNNCC 2 cut(s) 366, 2022
PspPI GGNCC 8 cut(s) 508, 989, 1130, 1183, 1651, 2266, 2545, 3135
PstNI CAGNNNCTG 2 cut(s) 1581, 2878
PsuI RGATCY 3 cut(s) 364, 1276, 2479
RsaI GTAC 5 cut(s) 137, 378, 515, 1170, 1627
RsaNI GTAC 5 cut(s) 136, 377, 514, 1169, 1626
RseI CAYNNNNRTG 3 cut(s) 580, 2794, 2923
SacI GAGCTC 1 cut(s) 216
SalI GTCGAC 1 cut(s) 2867
SapI GCTCTTC 1 cut(s) 2982
SatI GCNGC 7 cut(s) 477, 1573, 2518, 2841, 2970, 3046, 3102
Sau96I GGNCC 8 cut(s) 508, 989, 1130, 1183, 1651, 2266, 2545, 3135
ScrFI CCNGG 5 cut(s) 993, 1137, 1181, 1563, 3106
SduI GDGCHC 2 cut(s) 216, 1305
SfaNI GCATC 6 cut(s) 891, 1309, 1491, 2236, 2339, 2651
SfcI CTRYAG 1 cut(s) 2115
SgrAI CRCCGGYG 1 cut(s) 3129
SinI GGWCC 5 cut(s) 1130, 1651, 2266, 2545, 3135
SmiMI CAYNNNNRTG 3 cut(s) 580, 2794, 2923
SmlI CTYRAG 4 cut(s) 277, 467, 2185, 2398
SmoI CTYRAG 4 cut(s) 277, 467, 2185, 2398
SseBI AGGCCT 2 cut(s) 804, 3236
SsiI CCGC 7 cut(s) 770, 2018, 2840, 2969, 3043, 3050, 3102
SspI AATATT 3 cut(s) 661, 2308, 2746
SspMI CTAG 7 cut(s) 806, 948, 1148, 1325, 1406, 2270, 2577
SstI GAGCTC 1 cut(s) 216
StuI AGGCCT 2 cut(s) 804, 3236
StyD4I CCNGG 5 cut(s) 991, 1135, 1179, 1561, 3104
StyI CCWWGG 1 cut(s) 2058
TaaI ACNGT 6 cut(s) 638, 761, 1934, 2279, 2475, 2514
TaqI TCGA 4 cut(s) 1785, 2610, 2868, 3218
TatI WGTACW 1 cut(s) 135
TauI GCSGC 3 cut(s) 2843, 2972, 3104
TfiI GAWTC 8 cut(s) 323, 1708, 1937, 2197, 2393, 2822, 2951, 3076
TscAI CASTG 7 cut(s) 871, 2428, 2832, 2879, 2961, 3078, 3103
TseFI GTSAC 5 cut(s) 401, 1548, 1928, 2423, 3199
TseI GCWGC 4 cut(s) 476, 1572, 2517, 3045
Tsp45I GTSAC 5 cut(s) 401, 1548, 1928, 2423, 3199
TspGWI ACGGA 3 cut(s) 1791, 2220, 2988
TspRI CASTG 7 cut(s) 871, 2428, 2832, 2879, 2961, 3078, 3103
VpaK11BI GGWCC 5 cut(s) 1130, 1651, 2266, 2545, 3135
XbaI TCTAGA 1 cut(s) 1147
XceI RCATGY 2 cut(s) 1385, 1917
XmiI GTMKAC 7 cut(s) 554, 622, 633, 1059, 1386, 1599, 2868
XmnI GAANNNNTTC 2 cut(s) 1115, 1347
XspI CTAG 7 cut(s) 806, 948, 1148, 1325, 1406, 2270, 2577
Zsp2I ATGCAT 2 cut(s) 1117, 1506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.