Rw1G021000

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000164
Physical Location & Seq
Reverse (-)
44856263 .. 44857515
1253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G021000.1

Sequence Viewer

Length: 849 bp
ATGATAGAAGAATTTGATAAGAAGTGGAAGGAAGTTGTTGAGAAAAGTAGTTTAAGTGACAATGGATGGCTTCAATCAATTTATGACATTCGAGCATCATGGGTGCCTGCATACTGTAATCACATTTTCACGGCTGGAATGTCAAGTAGCCAACGTGCTGAAAGTTGTCATTCATTTTTCAAGAAGTATCATATGGACCTTGCTTCATGTACTTGCAAAAAATTTCAAAGTGAAGGAATCCCTTGTAGGCACATCTTGGAATATTTGCTAAAAGTTCAGGAAGTAGATTACTTGCTTGACCAATATATTTTAGAGAGATGGACTAAAGTTGCAAATGCTACTATAGTTAAGGACCTAGACGGGTTGGCCATAATAGATACAAATGCATTGGTGGTGAAGCGTAGTAAATTATTTCATCATGCTTCACTTGTTATTGACAAAGTCCTTACAAGTCCTGATGAAGCTCAGACCATGTTTATCGAAGCTCTTGACAGTGTGCTTGATAACCTCAAACAAATGCAAGTCAATAATAGTGAAAGTGAAAGTATCGGTAAGAAGTTGCCAAGTGATGTTCAACATAGGTATAACGAGTCAAAGATTATCAAAGCAAAGGGTTCTAGTAAAAGGCTTAAGAAAACAAAGGAGAAGACAGAGAGAAAGAAAAGTAGTACAAGGAAATGTCATGGATGTGGTTTGTATGGGCAATTACATGATAAACGGAACTGTCCAGCACTTAGTATGCCTAAAGATAGTTCTCTTCTTGACAAATATGTGGAAGAAGATGACGGGCCAATATTAACTGATGAAGGTGACAACTCCAGTTCCTTCGATGAAGATCATGACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

282

Amino Acids

32.16

Weight (kDa)

6.38

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 67 - 86 8.7e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 2 cut(s) 11, 221
AfaI GTAC 2 cut(s) 211, 670
AflII CTTAAG 1 cut(s) 629
AgsI TTSAA 4 cut(s) 74, 181, 227, 575
AluBI AGCT 2 cut(s) 464, 485
AluI AGCT 2 cut(s) 464, 485
AoxI GGCC 2 cut(s) 366, 788
ApoI RAATTY 2 cut(s) 11, 221
AspS9I GGNCC 3 cut(s) 196, 352, 788
AsuHPI GGTGA 2 cut(s) 406, 821
AvaII GGWCC 2 cut(s) 196, 352
BalI TGGCCA 1 cut(s) 368
BanI GGYRCC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 653
BccI CCATC 2 cut(s) 60, 312
BceAI ACGGC 1 cut(s) 147
BfaI CTAG 2 cut(s) 356, 618
BfmI CTRYAG 1 cut(s) 342
BfrI CTTAAG 1 cut(s) 629
Bme18I GGWCC 2 cut(s) 196, 352
BmgT120I GGNCC 3 cut(s) 196, 352, 788
BmiI GGNNCC 1 cut(s) 105
BmsI GCATC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 653
BpmI CTGGAG 1 cut(s) 802
BsaBI GATNNNNATC 1 cut(s) 834
Bse1I ACTGG 1 cut(s) 819
Bse8I GATNNNNATC 1 cut(s) 834
BseGI GGATG 2 cut(s) 71, 692
BseJI GATNNNNATC 1 cut(s) 834
BseMII CTCAG 1 cut(s) 479
BseNI ACTGG 1 cut(s) 819
BshFI GGCC 2 cut(s) 368, 790
BshNI GGYRCC 1 cut(s) 103
BsnI GGCC 2 cut(s) 368, 790
Bsp143I GATC 1 cut(s) 835
BspANI GGCC 2 cut(s) 368, 790
BspCNI CTCAG 1 cut(s) 478
BspHI TCATGA 1 cut(s) 838
BspLI GGNNCC 1 cut(s) 105
BspT107I GGYRCC 1 cut(s) 103
BspTI CTTAAG 1 cut(s) 629
BsrI ACTGG 1 cut(s) 819
BssMI GATC 1 cut(s) 835
Bst4CI ACNGT 3 cut(s) 116, 494, 725
Bst6I CTCTTC 1 cut(s) 762
BstAFI CTTAAG 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 465, 734
BstF5I GGATG 2 cut(s) 71, 692
BstKTI GATC 1 cut(s) 838
BstMBI GATC 1 cut(s) 835
BstSFI CTRYAG 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 653
BsuRI GGCC 2 cut(s) 368, 790
BtsCI GGATG 2 cut(s) 71, 692
BtsIMutI CAGTG 1 cut(s) 499
Cac8I GCNNGC 1 cut(s) 108
CciI TCATGA 1 cut(s) 838
Cfr13I GGNCC 3 cut(s) 196, 352, 788
Csp6I GTAC 2 cut(s) 210, 669
CviAII CATG 7 cut(s) 99, 207, 419, 472, 683, 710, 839
CviJI RGCY 8 cut(s) 70, 134, 150, 368, 464, 485, 628, 790
CviKI_1 RGCY 8 cut(s) 70, 134, 150, 368, 464, 485, 628, 790
CviQI GTAC 2 cut(s) 210, 669
DdeI CTNAG 2 cut(s) 465, 734
DpnI GATC 1 cut(s) 837
DpnII GATC 1 cut(s) 835
EaeI YGGCCR 1 cut(s) 366
Eam1104I CTCTTC 1 cut(s) 762
EarI CTCTTC 1 cut(s) 762
Eco47I GGWCC 2 cut(s) 196, 352
EcoO109I RGGNCCY 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 388
FaeI CATG 7 cut(s) 102, 210, 422, 475, 686, 713, 842
FatI CATG 7 cut(s) 98, 206, 418, 471, 682, 709, 838
FauNDI CATATG 1 cut(s) 192
FokI GGATG 2 cut(s) 78, 699
FspBI CTAG 2 cut(s) 356, 618
GsuI CTGGAG 1 cut(s) 802
HaeIII GGCC 2 cut(s) 368, 790
Hin1II CATG 7 cut(s) 102, 210, 422, 475, 686, 713, 842
HinfI GANTC 2 cut(s) 237, 590
HphI GGTGA 2 cut(s) 406, 821
Hpy188I TCNGA 1 cut(s) 468
Hpy188III TCNNGA 6 cut(s) 181, 278, 455, 488, 761, 839
HpyAV CCTTC 4 cut(s) 22, 227, 800, 835
HpyCH4III ACNGT 3 cut(s) 116, 494, 725
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 5 cut(s) 110, 216, 332, 386, 520
HpyF3I CTNAG 2 cut(s) 465, 734
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 7 cut(s) 102, 210, 422, 475, 686, 713, 842
Kzo9I GATC 1 cut(s) 835
LpnPI CCDG 6 cut(s) 120, 120, 263, 468, 741, 832
LweI GCATC 1 cut(s) 104
MaeI CTAG 2 cut(s) 356, 618
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 2 cut(s) 56, 809
MalI GATC 1 cut(s) 837
MboI GATC 1 cut(s) 835
MboII GAAGA 6 cut(s) 20, 658, 749, 788, 791, 845
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 6 cut(s) 11, 78, 221, 407, 704, 844
MluNI TGGCCA 1 cut(s) 368
MlyI GAGTC 1 cut(s) 599
MnlI CCTC 1 cut(s) 518
Mox20I TGGCCA 1 cut(s) 368
Mph1103I ATGCAT 1 cut(s) 388
MscI TGGCCA 1 cut(s) 368
MseI TTAA 5 cut(s) 53, 348, 630, 797, 847
MslI CAYNNNNRTG 1 cut(s) 687
Msp20I TGGCCA 1 cut(s) 368
MspCI CTTAAG 1 cut(s) 629
NdeI CATATG 1 cut(s) 192
NdeII GATC 1 cut(s) 835
NlaIII CATG 7 cut(s) 102, 210, 422, 475, 686, 713, 842
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 2 cut(s) 56, 809
NsiI ATGCAT 1 cut(s) 388
PagI TCATGA 1 cut(s) 838
PfeI GAWTC 1 cut(s) 237
PflFI GACNNNGTC 1 cut(s) 440
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
PpuMI RGGWCCY 1 cut(s) 352
Psp5II RGGWCCY 1 cut(s) 352
PspN4I GGNNCC 1 cut(s) 105
PspPI GGNCC 3 cut(s) 196, 352, 788
PspPPI RGGWCCY 1 cut(s) 352
PsyI GACNNNGTC 1 cut(s) 440
RsaI GTAC 2 cut(s) 211, 670
RsaNI GTAC 2 cut(s) 210, 669
RseI CAYNNNNRTG 1 cut(s) 687
SaqAI TTAA 5 cut(s) 53, 348, 630, 797, 847
Sau3AI GATC 1 cut(s) 835
Sau96I GGNCC 3 cut(s) 196, 352, 788
SchI GAGTC 1 cut(s) 599
SetI ASST 8 cut(s) 157, 201, 357, 466, 487, 510, 584, 811
SfaNI GCATC 1 cut(s) 104
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 2 cut(s) 196, 352
SmiMI CAYNNNNRTG 1 cut(s) 687
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 6 cut(s) 11, 78, 221, 407, 704, 844
SspI AATATT 2 cut(s) 263, 795
SspMI CTAG 2 cut(s) 356, 618
TaaI ACNGT 3 cut(s) 116, 494, 725
TaiI ACGT 1 cut(s) 157
TaqI TCGA 3 cut(s) 91, 480, 828
TasI AATT 6 cut(s) 11, 78, 221, 407, 704, 844
TatI WGTACW 2 cut(s) 209, 668
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 5 cut(s) 53, 348, 630, 797, 847
Tru9I TTAA 5 cut(s) 53, 348, 630, 797, 847
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 2 cut(s) 56, 809
Tsp45I GTSAC 2 cut(s) 56, 809
TspDTI ATGAA 6 cut(s) 162, 195, 404, 474, 819, 846
TspGWI ACGGA 1 cut(s) 733
TspRI CASTG 1 cut(s) 499
Tth111I GACNNNGTC 1 cut(s) 440
Vha464I CTTAAG 1 cut(s) 629
VpaK11BI GGWCC 2 cut(s) 196, 352
XapI RAATTY 2 cut(s) 11, 221
XspI CTAG 2 cut(s) 356, 618
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.