Rorug05G0473000

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
64974495 .. 64975529
1035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0473000.1

Sequence Viewer

Length: 519 bp
ATGAATGCATCTATTATATCCAATAAGGGACGCAATATTATTGCATCATCAAGAGATAATCCATTCACTCATAAGATAACTATGGTGTCTCAGGACACAACTCCTTCAGATATATCTTTTATACAACCAAGTCCCCCCCAACCACCAAGTGCCAAGCAACGTGCCAAACAGCAGAGGTCAACTCAAGATGTAGCAAATGCTCCAAATAATACTCGTAGAAAGGCAAGAGCTTTGGATGATATGGCTAAAAAATTTGGAGTGATCACTGAAGCCATTGCAGGAATGGCTCCAAAGTTTGAAGGCTTGATTAATGTTCTCTCAACAGATAAGGATCTTGCTAATATGCAAGGCAAACTTGGTGGTGAGTTGAGGAAAATGGATTTCCTATCTCCATTGCAGGTATTTCACGTCACCAACAAATTAGCTAAAGAGCATGACTTGTTGAGGGTCTTCTTTACCATGACTGATGAGGAAAAGAAGGATTACATAATCAACCTTCTGCAATATGGCCTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

172

Amino Acids

19.22

Weight (kDa)

9.62

Isoelectric Point (pI)

55.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 388
AclWI GGATC 1 cut(s) 339
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 2 cut(s) 90, 288
AdeI CACNNNGTG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 299
AjiI CACGTC 1 cut(s) 409
AluBI AGCT 2 cut(s) 230, 425
AluI AGCT 2 cut(s) 230, 425
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 339
AoxI GGCC 1 cut(s) 508
ApoI RAATTY 1 cut(s) 251
AseI ATTAAT 1 cut(s) 309
AsuHPI GGTGA 2 cut(s) 374, 403
BbsI GAAGAC 1 cut(s) 442
BclI TGATCA 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 512
BfuAI ACCTGC 1 cut(s) 388
BmgBI CACGTC 1 cut(s) 409
BmiI GGNNCC 1 cut(s) 288
BmsI GCATC 2 cut(s) 17, 53
BpiI GAAGAC 1 cut(s) 442
BplI GAGNNNNNCTC 2 cut(s) 166, 198
BpuEI CTTGAG 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 330
Bse3DI GCAATG 2 cut(s) 273, 392
Bse8I GATNNNNATC 1 cut(s) 330
BseGI GGATG 1 cut(s) 241
BseJI GATNNNNATC 1 cut(s) 330
BseMI GCAATG 2 cut(s) 273, 392
BseMII CTCAG 1 cut(s) 104
BshFI GGCC 1 cut(s) 510
BslFI GGGAC 2 cut(s) 42, 117
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 2 cut(s) 42, 117
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 1 cut(s) 510
Bsp143I GATC 2 cut(s) 261, 331
BspANI GGCC 1 cut(s) 510
BspCNI CTCAG 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 288
BspMI ACCTGC 1 cut(s) 388
BspPI GGATC 1 cut(s) 339
BsrDI GCAATG 2 cut(s) 273, 392
BssMI GATC 2 cut(s) 261, 331
Bst4CI ACNGT 1 cut(s) 516
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 2 cut(s) 264, 334
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 2 cut(s) 261, 331
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 512
BstV2I GAAGAC 1 cut(s) 442
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 1 cut(s) 510
BtrI CACGTC 1 cut(s) 409
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 264
BveI ACCTGC 1 cut(s) 388
CseI GACGC 1 cut(s) 39
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 2 cut(s) 434, 460
CviJI RGCY 7 cut(s) 230, 245, 272, 287, 303, 425, 510
CviKI_1 RGCY 7 cut(s) 230, 245, 272, 287, 303, 425, 510
DdeI CTNAG 1 cut(s) 90
DpnI GATC 2 cut(s) 263, 333
DpnII GATC 2 cut(s) 261, 331
DraIII CACNNNGTG 1 cut(s) 149
Eco57I CTGAAG 2 cut(s) 90, 288
EcoT22I ATGCAT 1 cut(s) 10
FaeI CATG 2 cut(s) 437, 463
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 2 cut(s) 42, 117
FatI CATG 2 cut(s) 433, 459
FbaI TGATCA 1 cut(s) 261
FokI GGATG 1 cut(s) 248
HaeIII GGCC 1 cut(s) 510
HgaI GACGC 1 cut(s) 39
Hin1II CATG 2 cut(s) 437, 463
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
HphI GGTGA 2 cut(s) 374, 403
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 1 cut(s) 109
Hpy188III TCNNGA 3 cut(s) 51, 92, 185
Hpy8I GTNNAC 1 cut(s) 180
HpyAV CCTTC 4 cut(s) 114, 293, 472, 506
HpyCH4III ACNGT 1 cut(s) 516
HpyCH4IV ACGT 2 cut(s) 160, 408
HpyCH4V TGCA 6 cut(s) 8, 44, 278, 346, 397, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 2 cut(s) 160, 408
Hsp92II CATG 2 cut(s) 437, 463
Ksp22I TGATCA 1 cut(s) 261
Kzo9I GATC 2 cut(s) 261, 331
LmnI GCTCC 2 cut(s) 205, 292
LpnPI CCDG 3 cut(s) 77, 264, 383
LweI GCATC 2 cut(s) 17, 53
MaeII ACGT 2 cut(s) 160, 408
MaeIII GTNAC 1 cut(s) 409
MalI GATC 2 cut(s) 263, 333
MboI GATC 2 cut(s) 261, 331
MboII GAAGA 1 cut(s) 442
MflI RGATCY 1 cut(s) 331
MluCI AATT 2 cut(s) 251, 419
MnlI CCTC 4 cut(s) 168, 363, 438, 463
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 1 cut(s) 309
Mva1269I GAATGC 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 284
NdeII GATC 2 cut(s) 261, 331
NlaIII CATG 2 cut(s) 437, 463
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 409
NsiI ATGCAT 1 cut(s) 10
PctI GAATGC 1 cut(s) 10
PshBI ATTAAT 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 288
PsuI RGATCY 1 cut(s) 331
SaqAI TTAA 1 cut(s) 309
Sau3AI GATC 2 cut(s) 261, 331
SetI ASST 7 cut(s) 163, 179, 232, 402, 411, 427, 498
SfaNI GCATC 2 cut(s) 17, 53
SfcI CTRYAG 1 cut(s) 512
SmlI CTYRAG 1 cut(s) 183
SmoI CTYRAG 1 cut(s) 183
Sse9I AATT 2 cut(s) 251, 419
SspI AATATT 1 cut(s) 37
TaaI ACNGT 1 cut(s) 516
TaiI ACGT 2 cut(s) 163, 411
TasI AATT 2 cut(s) 251, 419
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 1 cut(s) 271
TseFI GTSAC 1 cut(s) 409
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 271
VspI ATTAAT 1 cut(s) 309
XapI RAATTY 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.