Rmu_sc0000998.1_g000003

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000998.1
OG0000164
Physical Location & Seq
Reverse (-)
7175 .. 9504
2330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000998.1_g000003.1.cds

Sequence Viewer

Length: 1629 bp
atggagtcgaaggatgatcatatttatattcctcaagtaaaggcagagttgatgcctatattgcaccaagagtttgaaacaatagatgatgttgctgctttctacaatagatatgcaaaagaagcagggtttagtatcagaagtcattctactgcaaccaacaaagataatacccaacttatgaggaaggagtacgtctgttataagcaaggaacttccaaagttgaaggagaaaaacgtaagagaggattaccaaaagtgggttgtaaagcaagaattgcagctatgagaaagaagaagtctaggagatatgcaatctttgtatttgtcgagggtcataaccacccattaacaaacccacctagagtacatttgttgagatctcaccgtcgtgtttcaaaagttaacacagttctatcacagcaactaagcttggtaaatgttcagaaacatacacagtttgaattctttggtgttcaggcaggtggcattgagaatattggttgtacacagcgtgatctgtataattatggaagaacttgttgtgaagcgaaaaaggggcatgatggagatctattgtacatgcattttcaaaatgagaaagaaaaagatccttcttttgtctatacaatggagtcggatgaggaaaacagagtaacaatgtgcttttgggctgactcaatttcaagacgagcttacagcttttatggagatgtcgttaagaagggacttcttcaccaacaccattatgagttagaggaggatcatattaatattgatgagaagccaaaaactgtcatgtcccttgacatagaagatcatatggctaaggtttatacatgtaagctattttatgaagttcaagaacaattgaaagagggcttcaaatataaactagaacttctaagagaaaatgccactcattgcgtgtttaaggttatgcgaaagaacattgatacttgtaaatctcgtgaattgacttatgaaaaagcttctgattttacatcatgtagctgtagaaagtttgagagtgaagggcttccatgtcggcatgttttgtcatatttgattaaaatccaagatgttgataaattgcctattcagtacatcttgaagagatggactaaagctgcaagacagagttttgtgttagattctgatggaatggaggtaaaagataaaaaagctttacttgcaaggagaactaaactattccagcatgctacagatgcaattgataaggcaatggtgagtaatgaggctagtcagctctttatggaatgcttggatgcgttcttggagaatattaaaacattgtttggtaatgaaagtggacaaagtgtagtagttttggagaccaagattgatgctattcagcatatttttaatgaaccaaatcaagtgagggccaaagggtgtgggaaaaggttgaaaaaaagaaaagagaagaggaaagttaaggtaaaggagagtcaaggtaggcaatgccatggatgtggactattaggtcagtcacatgacaaaagaaattgtctaacactgcatggaaaacctgctattaacaaagatggggagtcaagttccagcagtatggatgaggatggttgttcatcaacaggtgaactctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

542

Amino Acids

62.4

Weight (kDa)

8.96

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AarI CACCTGC 1 cut(s) 473
AasI GACNNNNNNGTC 1 cut(s) 1506
Acc36I ACCTGC 2 cut(s) 473, 1561
AclWI GGATC 2 cut(s) 605, 771
AcsI RAATTY 1 cut(s) 464
AdeI CACNNNGTG 1 cut(s) 515
AfaI GTAC 5 cut(s) 194, 369, 508, 581, 1106
AfiI CCNNNNNNNGG 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 839
AleI CACNNNNGTG 1 cut(s) 390
Alw26I GTCTC 1 cut(s) 1349
AlwI GGATC 2 cut(s) 605, 771
AoxI GGCC 1 cut(s) 1407
ApeKI GCWGC 3 cut(s) 95, 281, 1130
ApoI RAATTY 1 cut(s) 464
AseI ATTAAT 1 cut(s) 771
Asp700I GAANNNNTTC 2 cut(s) 145, 1038
AspS9I GGNCC 1 cut(s) 1407
AsuHPI GGTGA 3 cut(s) 377, 728, 1261
BarI GAAGNNNNNNTAC 2 cut(s) 133, 165
BauI CACGAG 1 cut(s) 969
BbvI GCAGC 3 cut(s) 82, 293, 1117
BccI CCATC 5 cut(s) 560, 1113, 1154, 1562, 1595
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 1349
BfaI CTAG 4 cut(s) 303, 363, 896, 1263
BfmI CTRYAG 2 cut(s) 1015, 1224
BfuAI ACCTGC 2 cut(s) 473, 1561
BglII AGATCT 2 cut(s) 380, 571
BisI GCNGC 3 cut(s) 96, 282, 1131
BlsI GCNGC 3 cut(s) 97, 283, 1132
BmgT120I GGNCC 1 cut(s) 1407
BmsI GCATC 4 cut(s) 42, 1219, 1279, 1357
Bpu10I CCTNAGC 1 cut(s) 828
BpuEI CTTGAG 1 cut(s) 18
BsaBI GATNNNNATC 2 cut(s) 570, 1073
BsaI GGTCTC 1 cut(s) 1349
BsaJI CCNNGG 1 cut(s) 1489
BsaXI ACNNNNNCTCC 2 cut(s) 702, 732
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse3DI GCAATG 3 cut(s) 922, 1251, 1490
Bse8I GATNNNNATC 2 cut(s) 570, 1073
BseDI CCNNGG 1 cut(s) 1489
BseGI GGATG 6 cut(s) 19, 646, 1294, 1499, 1600, 1606
BseJI GATNNNNATC 2 cut(s) 570, 1073
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 3 cut(s) 922, 1251, 1490
BseRI GAGGAG 1 cut(s) 773
BseXI GCAGC 3 cut(s) 82, 293, 1117
BshFI GGCC 1 cut(s) 1409
BslFI GGGAC 2 cut(s) 741, 787
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 1349
BsmFI GGGAC 2 cut(s) 741, 787
BsmI GAATGC 1 cut(s) 1286
BsnI GGCC 1 cut(s) 1409
Bso31I GGTCTC 1 cut(s) 1349
Bsp1407I TGTACA 2 cut(s) 506, 579
Bsp143I GATC 7 cut(s) 16, 380, 517, 571, 610, 763, 817
Bsp19I CCATGG 1 cut(s) 1489
BspANI GGCC 1 cut(s) 1409
BspMI ACCTGC 2 cut(s) 473, 1561
BspPI GGATC 2 cut(s) 605, 771
BspTNI GGTCTC 1 cut(s) 1349
BsrDI GCAATG 3 cut(s) 922, 1251, 1490
BsrGI TGTACA 2 cut(s) 506, 579
BssECI CCNNGG 1 cut(s) 1489
BssMI GATC 7 cut(s) 16, 380, 517, 571, 610, 763, 817
BssSI CACGAG 1 cut(s) 969
BssT1I CCWWGG 1 cut(s) 1489
Bst2BI CACGAG 1 cut(s) 969
Bst4CI ACNGT 4 cut(s) 389, 412, 459, 796
Bst6I CTCTTC 2 cut(s) 1109, 1442
BstAPI GCANNNNNTGC 1 cut(s) 278
BstAUI TGTACA 2 cut(s) 506, 579
BstC8I GCNNGC 1 cut(s) 1221
BstDEI CTNAG 3 cut(s) 428, 828, 905
BstDSI CCRYGG 1 cut(s) 1489
BstF5I GGATG 6 cut(s) 19, 646, 1294, 1499, 1600, 1606
BstKTI GATC 7 cut(s) 19, 383, 520, 574, 613, 766, 820
BstMAI GTCTC 1 cut(s) 1349
BstMBI GATC 7 cut(s) 16, 380, 517, 571, 610, 763, 817
BstMWI GCNNNNNNNGC 5 cut(s) 61, 122, 278, 1193, 1229
BstNSI RCATGY 4 cut(s) 586, 843, 1055, 1223
BstSFI CTRYAG 2 cut(s) 1015, 1224
BstV1I GCAGC 3 cut(s) 82, 293, 1117
BstX2I RGATCY 3 cut(s) 380, 571, 610
BstXI CCANNNNNNTGG 2 cut(s) 1496, 1591
BstYI RGATCY 3 cut(s) 380, 571, 610
BsuRI GGCC 1 cut(s) 1409
BtgI CCRYGG 1 cut(s) 1489
BtsCI GGATG 6 cut(s) 19, 646, 1294, 1499, 1600, 1606
BtsI GCAGTG 1 cut(s) 1538
BtsIMutI CAGTG 1 cut(s) 1538
BveI ACCTGC 2 cut(s) 473, 1561
Cac8I GCNNGC 1 cut(s) 1221
Cfr13I GGNCC 1 cut(s) 1407
Csp6I GTAC 5 cut(s) 193, 368, 507, 580, 1105
CspCI CAANNNNNGTGG 2 cut(s) 1399, 1434
CviQI GTAC 5 cut(s) 193, 368, 507, 580, 1105
DdeI CTNAG 3 cut(s) 428, 828, 905
DpnI GATC 7 cut(s) 18, 382, 519, 573, 612, 765, 819
DpnII GATC 7 cut(s) 16, 380, 517, 571, 610, 763, 817
DraIII CACNNNGTG 1 cut(s) 515
DrdI GACNNNNNNGTC 1 cut(s) 1506
DseDI GACNNNNNNGTC 1 cut(s) 1506
Eam1104I CTCTTC 2 cut(s) 1109, 1442
EarI CTCTTC 2 cut(s) 1109, 1442
Eco130I CCWWGG 1 cut(s) 1489
Eco31I GGTCTC 1 cut(s) 1349
EcoRI GAATTC 1 cut(s) 464
EcoT14I CCWWGG 1 cut(s) 1489
EcoT22I ATGCAT 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 1489
FalI AAGNNNNNCTT 4 cut(s) 679, 711, 1176, 1208
FaqI GGGAC 2 cut(s) 741, 787
FauNDI CATATG 1 cut(s) 822
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 3 cut(s) 96, 282, 1131
FokI GGATG 6 cut(s) 26, 653, 1301, 1506, 1607, 1613
Fsp4HI GCNGC 3 cut(s) 96, 282, 1131
FspBI CTAG 4 cut(s) 303, 363, 896, 1263
GluI GCNGC 3 cut(s) 96, 282, 1131
HaeIII GGCC 1 cut(s) 1409
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 3 cut(s) 430, 990, 1185
HinfI GANTC 6 cut(s) 5, 635, 677, 1154, 1471, 1574
HpaI GTTAAC 1 cut(s) 406
HphI GGTGA 3 cut(s) 377, 728, 1261
Hpy166II GTNNAC 5 cut(s) 406, 509, 1334, 1499, 1622
Hpy188I TCNGA 5 cut(s) 140, 447, 640, 997, 1159
Hpy188III TCNNGA 4 cut(s) 687, 863, 971, 1111
Hpy8I GTNNAC 5 cut(s) 406, 509, 1334, 1499, 1622
Hpy99I CGWCG 1 cut(s) 393
HpyAV CCTTC 6 cut(s) 4, 181, 221, 624, 718, 1028
HpyCH4III ACNGT 4 cut(s) 389, 412, 459, 796
HpyCH4IV ACGT 2 cut(s) 195, 238
HpyF10VI GCNNNNNNNGC 5 cut(s) 61, 122, 278, 1193, 1229
HpyF3I CTNAG 3 cut(s) 428, 828, 905
HpySE526I ACGT 2 cut(s) 195, 238
Ksp22I TGATCA 1 cut(s) 16
KspAI GTTAAC 1 cut(s) 406
Kzo9I GATC 7 cut(s) 16, 380, 517, 571, 610, 763, 817
LpnPI CCDG 7 cut(s) 111, 464, 468, 1229, 1566, 1597, 1602
Lsp1109I GCAGC 3 cut(s) 82, 293, 1117
LweI GCATC 4 cut(s) 42, 1219, 1279, 1357
MaeI CTAG 4 cut(s) 303, 363, 896, 1263
MaeII ACGT 2 cut(s) 195, 238
MaeIII GTNAC 2 cut(s) 655, 1512
MalI GATC 7 cut(s) 18, 382, 519, 573, 612, 765, 819
MboI GATC 7 cut(s) 16, 380, 517, 571, 610, 763, 817
MboII GAAGA 6 cut(s) 307, 546, 725, 827, 1126, 1459
MfeI CAATTG 2 cut(s) 869, 1233
MflI RGATCY 3 cut(s) 380, 571, 610
MluCI AATT 9 cut(s) 276, 464, 526, 681, 869, 974, 1091, 1233, 1528
MlyI GAGTC 5 cut(s) 14, 644, 671, 1480, 1583
MmeI TCCRAC 1 cut(s) 618
Mph1103I ATGCAT 1 cut(s) 588
MroXI GAANNNNTTC 2 cut(s) 145, 1038
MslI CAYNNNNRTG 3 cut(s) 390, 747, 1494
MunI CAATTG 2 cut(s) 869, 1233
Mva1269I GAATGC 1 cut(s) 1286
MwoI GCNNNNNNNGC 5 cut(s) 61, 122, 278, 1193, 1229
NcoI CCATGG 1 cut(s) 1489
NdeI CATATG 1 cut(s) 822
NdeII GATC 7 cut(s) 16, 380, 517, 571, 610, 763, 817
NmuCI GTSAC 1 cut(s) 1512
NsiI ATGCAT 1 cut(s) 588
NspI RCATGY 4 cut(s) 586, 843, 1055, 1223
OliI CACNNNNGTG 1 cut(s) 390
PaeI GCATGC 1 cut(s) 1223
PaqCI CACCTGC 1 cut(s) 473
PciI ACATGT 1 cut(s) 839
PctI GAATGC 1 cut(s) 1286
PdmI GAANNNNTTC 2 cut(s) 145, 1038
PfeI GAWTC 1 cut(s) 1154
PkrI GCNGC 3 cut(s) 97, 283, 1132
PleI GAGTC 5 cut(s) 13, 643, 671, 1479, 1582
PpsI GAGTC 5 cut(s) 13, 643, 671, 1479, 1582
PscI ACATGT 1 cut(s) 839
PshBI ATTAAT 1 cut(s) 771
PsiI TTATAA 1 cut(s) 204
PspPI GGNCC 1 cut(s) 1407
PsuI RGATCY 3 cut(s) 380, 571, 610
RsaI GTAC 5 cut(s) 194, 369, 508, 581, 1106
RsaNI GTAC 5 cut(s) 193, 368, 507, 580, 1105
RseI CAYNNNNRTG 3 cut(s) 390, 747, 1494
SatI GCNGC 3 cut(s) 96, 282, 1131
Sau3AI GATC 7 cut(s) 16, 380, 517, 571, 610, 763, 817
Sau96I GGNCC 1 cut(s) 1407
SchI GAGTC 5 cut(s) 14, 644, 671, 1480, 1583
SfaNI GCATC 4 cut(s) 42, 1219, 1279, 1357
SfcI CTRYAG 2 cut(s) 1015, 1224
SmiMI CAYNNNNRTG 3 cut(s) 390, 747, 1494
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
SphI GCATGC 1 cut(s) 1223
Sse9I AATT 9 cut(s) 276, 464, 526, 681, 869, 974, 1091, 1233, 1528
SspI AATATT 3 cut(s) 499, 775, 1306
SspMI CTAG 4 cut(s) 303, 363, 896, 1263
StyI CCWWGG 1 cut(s) 1489
TaaI ACNGT 4 cut(s) 389, 412, 459, 796
TaiI ACGT 2 cut(s) 198, 241
TaqI TCGA 2 cut(s) 8, 330
TasI AATT 9 cut(s) 276, 464, 526, 681, 869, 974, 1091, 1233, 1528
TatI WGTACW 4 cut(s) 367, 506, 579, 1104
TfiI GAWTC 1 cut(s) 1154
TscAI CASTG 1 cut(s) 1545
TseFI GTSAC 1 cut(s) 1512
TseI GCWGC 3 cut(s) 95, 281, 1130
Tsp45I GTSAC 1 cut(s) 1512
TspDTI ATGAA 5 cut(s) 870, 999, 1341, 1404, 1599
TspRI CASTG 1 cut(s) 1545
VspI ATTAAT 1 cut(s) 771
XapI RAATTY 1 cut(s) 464
XceI RCATGY 4 cut(s) 586, 843, 1055, 1223
XmnI GAANNNNTTC 2 cut(s) 145, 1038
XspI CTAG 4 cut(s) 303, 363, 896, 1263
Zsp2I ATGCAT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.