Rw6G006890

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000164
Physical Location & Seq
Forward (+)
10997849 .. 11001405
3557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G006890.1

Sequence Viewer

Length: 915 bp
ATGTATTGCAGTTGGCACATATTAAATAAGTTTTTAGAAAAGATAGGTGTAGTCAAATGTAATGAATATTATGATGACTTTAGAAGTTGTGTGTGGAACTCTGAGATAACAGAAGAATTTGATAAGATGTGGAAGGAAGTCGTTGAGAAGAGTAGTTTAAGTGACAATGGATGGCTTCAATCAATTTACGACATTCGAGCGGGGAACCGTACGGATCATTTTCCCTACATGTTTCAACTTATGAGAGAGGATGGCAATCAAAGATTGTATTTGGTAAAGAAAAGAAGTGATCAGATTCAAAAGGATCAGGAAATGATTTATGACAAGCATACGGACCTTGCTTCATGTACTTGCAAAAAATTTCAAAGTGAAGGAATCCCATGTAGGCACATCTTGGGATATTTGCTGAAAGTTCAGGAAATAACAGATACAAATGCATTGGTGGTGAAGCATGGTAAATTATTTCATCATACTTCACTTGTTATTGACAAAGTCCTTACAAGTCCTGATGAAGCTCAGACCATGTTTATCGAGGCTCTTGACAATAAGTTGCCAAGTGATGTTCAACATAGGTATAATGAGCCAAAGATTATCAAAGCAAAGGGTTTTGGAAAAAGGCTTAAGAAGTCAAAGGAGAAGACAGAGAGAAAGAGAAGTAGTACAAGGAAGTGTCATGCATGTGGTTTGTATGGGCAATTACATGATAAACGAAACTGTCCGGCGCTTAATATGCCTAAAGATAGTTCTGTTCTTGACAAATATGCAGACAAGGATGAAGTTGATCACGAGCCAATATCAACTGATGAAGATGAGGACCCCAGTTCCTTCGATGAAGATGATGACAATCAAGTTCCCCTGCTTTTGAAGAGACTTTATCTCAAAGACTTGTTTTTACAACATAGCAGCAGAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

304

Amino Acids

35.62

Weight (kDa)

6.47

Isoelectric Point (pI)

56.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 112 - 135 1e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 200
AciI CCGC 1 cut(s) 200
AclWI GGATC 2 cut(s) 222, 312
AcsI RAATTY 2 cut(s) 116, 359
AfaI GTAC 3 cut(s) 211, 349, 661
AflII CTTAAG 1 cut(s) 620
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 6 cut(s) 179, 236, 299, 365, 566, 865
AluBI AGCT 1 cut(s) 515
AluI AGCT 1 cut(s) 515
Alw26I GTCTC 1 cut(s) 862
AlwI GGATC 2 cut(s) 222, 312
ApeKI GCWGC 1 cut(s) 903
ApoI RAATTY 2 cut(s) 116, 359
AspLEI GCGC 1 cut(s) 724
AspS9I GGNCC 2 cut(s) 334, 814
AsuHPI GGTGA 1 cut(s) 457
AvaII GGWCC 2 cut(s) 334, 814
BauI CACGAG 1 cut(s) 785
BbsI GAAGAC 1 cut(s) 644
BccI CCATC 2 cut(s) 165, 245
BclI TGATCA 2 cut(s) 289, 781
BcoDI GTCTC 1 cut(s) 862
BfoI RGCGCY 1 cut(s) 725
BfrI CTTAAG 1 cut(s) 620
BisI GCNGC 1 cut(s) 904
BlsI GCNGC 1 cut(s) 905
Bme18I GGWCC 2 cut(s) 334, 814
BmgT120I GGNCC 2 cut(s) 334, 814
BmiI GGNNCC 2 cut(s) 206, 816
BmrI ACTGGG 1 cut(s) 813
BmuI ACTGGG 1 cut(s) 813
BpiI GAAGAC 1 cut(s) 644
BsaBI GATNNNNATC 2 cut(s) 255, 843
Bse1I ACTGG 1 cut(s) 819
Bse8I GATNNNNATC 2 cut(s) 255, 843
BseGI GGATG 3 cut(s) 176, 256, 778
BseJI GATNNNNATC 2 cut(s) 255, 843
BseMII CTCAG 2 cut(s) 93, 530
BseNI ACTGG 1 cut(s) 819
BsiSI CCGG 1 cut(s) 719
BsiWI CGTACG 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 862
Bsp143I GATC 4 cut(s) 214, 289, 304, 781
BspACI CCGC 1 cut(s) 200
BspCNI CTCAG 2 cut(s) 94, 529
BspLI GGNNCC 2 cut(s) 206, 816
BspPI GGATC 2 cut(s) 222, 312
BspTI CTTAAG 1 cut(s) 620
BsrBI CCGCTC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 819
BssMI GATC 4 cut(s) 214, 289, 304, 781
BssSI CACGAG 1 cut(s) 785
Bst2BI CACGAG 1 cut(s) 785
Bst4CI ACNGT 2 cut(s) 209, 716
Bst6I CTCTTC 2 cut(s) 143, 860
BstAFI CTTAAG 1 cut(s) 620
BstDEI CTNAG 2 cut(s) 102, 516
BstF5I GGATG 3 cut(s) 176, 256, 778
BstH2I RGCGCY 1 cut(s) 725
BstHHI GCGC 1 cut(s) 724
BstKTI GATC 4 cut(s) 217, 292, 307, 784
BstMAI GTCTC 1 cut(s) 862
BstMBI GATC 4 cut(s) 214, 289, 304, 781
BstMWI GCNNNNNNNGC 1 cut(s) 730
BstNSI RCATGY 2 cut(s) 232, 681
BstV2I GAAGAC 1 cut(s) 644
BtsCI GGATG 3 cut(s) 176, 256, 778
CfoI GCGC 1 cut(s) 724
Cfr13I GGNCC 2 cut(s) 334, 814
Csp6I GTAC 3 cut(s) 210, 348, 660
CviAII CATG 8 cut(s) 229, 345, 381, 452, 523, 674, 678, 701
CviJI RGCY 6 cut(s) 175, 515, 536, 583, 619, 790
CviKI_1 RGCY 6 cut(s) 175, 515, 536, 583, 619, 790
CviQI GTAC 3 cut(s) 210, 348, 660
DdeI CTNAG 2 cut(s) 102, 516
DpnI GATC 4 cut(s) 216, 291, 306, 783
DpnII GATC 4 cut(s) 214, 289, 304, 781
Eam1104I CTCTTC 2 cut(s) 143, 860
EarI CTCTTC 2 cut(s) 143, 860
Eco47I GGWCC 2 cut(s) 334, 814
EcoO109I RGGNCCY 1 cut(s) 814
EcoT22I ATGCAT 2 cut(s) 439, 679
FaeI CATG 8 cut(s) 232, 348, 384, 455, 526, 677, 681, 704
FatI CATG 8 cut(s) 228, 344, 380, 451, 522, 673, 677, 700
FauI CCCGC 1 cut(s) 193
FbaI TGATCA 2 cut(s) 289, 781
Fnu4HI GCNGC 1 cut(s) 904
FokI GGATG 3 cut(s) 183, 263, 785
Fsp4HI GCNGC 1 cut(s) 904
GlaI GCGC 1 cut(s) 723
GluI GCNGC 1 cut(s) 904
HaeII RGCGCY 1 cut(s) 725
HapII CCGG 1 cut(s) 719
HhaI GCGC 1 cut(s) 724
Hin1II CATG 8 cut(s) 232, 348, 384, 455, 526, 677, 681, 704
Hin6I GCGC 1 cut(s) 722
HinP1I GCGC 1 cut(s) 722
HinfI GANTC 2 cut(s) 295, 375
HpaII CCGG 1 cut(s) 719
HphI GGTGA 1 cut(s) 457
Hpy188I TCNGA 3 cut(s) 103, 294, 519
Hpy188III TCNNGA 6 cut(s) 308, 416, 506, 539, 752, 785
HpyAV CCTTC 3 cut(s) 127, 365, 835
HpyCH4III ACNGT 2 cut(s) 209, 716
HpyCH4V TGCA 5 cut(s) 9, 354, 437, 677, 764
HpyF10VI GCNNNNNNNGC 1 cut(s) 730
HpyF3I CTNAG 2 cut(s) 102, 516
Hsp92II CATG 8 cut(s) 232, 348, 384, 455, 526, 677, 681, 704
HspAI GCGC 1 cut(s) 722
Ksp22I TGATCA 2 cut(s) 289, 781
Kzo9I GATC 4 cut(s) 214, 289, 304, 781
LpnPI CCDG 6 cut(s) 293, 401, 519, 732, 832, 869
MaeIII GTNAC 1 cut(s) 161
MalI GATC 4 cut(s) 216, 291, 306, 783
MbiI CCGCTC 1 cut(s) 200
MboI GATC 4 cut(s) 214, 289, 304, 781
MboII GAAGA 6 cut(s) 125, 160, 649, 818, 845, 877
MluCI AATT 5 cut(s) 116, 183, 359, 458, 695
MnlI CCTC 3 cut(s) 241, 526, 805
Mph1103I ATGCAT 2 cut(s) 439, 679
MseI TTAA 4 cut(s) 23, 158, 621, 726
MslI CAYNNNNRTG 1 cut(s) 678
MspCI CTTAAG 1 cut(s) 620
MspI CCGG 1 cut(s) 719
MwoI GCNNNNNNNGC 1 cut(s) 730
NdeII GATC 4 cut(s) 214, 289, 304, 781
NlaIII CATG 8 cut(s) 232, 348, 384, 455, 526, 677, 681, 704
NlaIV GGNNCC 2 cut(s) 206, 816
NmuCI GTSAC 1 cut(s) 161
NsiI ATGCAT 2 cut(s) 439, 679
NspI RCATGY 2 cut(s) 232, 681
PciI ACATGT 1 cut(s) 228
PfeI GAWTC 2 cut(s) 295, 375
Pfl23II CGTACG 1 cut(s) 209
PflFI GACNNNGTC 1 cut(s) 491
PkrI GCNGC 1 cut(s) 905
PpuMI RGGWCCY 1 cut(s) 814
PscI ACATGT 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 814
PspLI CGTACG 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 206, 816
PspPI GGNCC 2 cut(s) 334, 814
PspPPI RGGWCCY 1 cut(s) 814
PsyI GACNNNGTC 1 cut(s) 491
RsaI GTAC 3 cut(s) 211, 349, 661
RsaNI GTAC 3 cut(s) 210, 348, 660
RseI CAYNNNNRTG 1 cut(s) 678
SaqAI TTAA 4 cut(s) 23, 158, 621, 726
SatI GCNGC 1 cut(s) 904
Sau3AI GATC 4 cut(s) 214, 289, 304, 781
Sau96I GGNCC 2 cut(s) 334, 814
SetI ASST 4 cut(s) 49, 339, 517, 575
SinI GGWCC 2 cut(s) 334, 814
SmiMI CAYNNNNRTG 1 cut(s) 678
SmlI CTYRAG 1 cut(s) 620
SmoI CTYRAG 1 cut(s) 620
Sse9I AATT 5 cut(s) 116, 183, 359, 458, 695
SsiI CCGC 1 cut(s) 200
SspI AATATT 1 cut(s) 68
TaaI ACNGT 2 cut(s) 209, 716
TaqI TCGA 3 cut(s) 196, 531, 828
TasI AATT 5 cut(s) 116, 183, 359, 458, 695
TatI WGTACW 2 cut(s) 347, 659
TfiI GAWTC 2 cut(s) 295, 375
Tru1I TTAA 4 cut(s) 23, 158, 621, 726
Tru9I TTAA 4 cut(s) 23, 158, 621, 726
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 1 cut(s) 903
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 7 cut(s) 78, 333, 455, 525, 789, 819, 846
TspGWI ACGGA 2 cut(s) 227, 347
Tth111I GACNNNGTC 1 cut(s) 491
Vha464I CTTAAG 1 cut(s) 620
VpaK11BI GGWCC 2 cut(s) 334, 814
XapI RAATTY 2 cut(s) 116, 359
XceI RCATGY 2 cut(s) 232, 681
Zsp2I ATGCAT 2 cut(s) 439, 679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.