Rorug07G0199000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000164
Physical Location & Seq
Reverse (-)
17231275 .. 17232785
1511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0199000.1

Sequence Viewer

Length: 672 bp
ATGGCTTCGTCAATCTCAATCGCTCTCAGAAGGGCCTCATCCCCAAGCCTCTTCTCCAAGCTCTTCAACCCTCTTCGCTCTGTTTCAGTAGCTCCCTCTGTTTCTCGCTCCTTCAACACCAACGCCCAGAGGACCAGCTACGACGACGATGACCGGAGCGTCTCCGTCGACCGCACCACCAGCAGCTCTCCCTCTCGCCGCCGTGACCCTATAGATGTGTTTGATCCATTTTACGATGAGTCTCGGAGTCTTGCAAGAAGTCTGAACCAGGTGCCAAGAAGCCTGAGCCAGGTCCTTAACTTGATGGACCAATTCATGGACAACCCATACCTGGCTGCGTCTCGAGGAGTCGGTGCAGCTGGATCAAGAAGAGGGTGGGACGTGAAGGAAAACGACGACGCATTGCTGCTGAGGATGGACATGCCAGGGCTTGAGAAGGGGGACGTGAAGGTGTCTGTGGAGCAGAACACCCTGACTGTGAGAGGAGAAGGAAAGGACCCTGAGGATGAAGAAGAAGGAGGGAGGAGATTCTCTAGCCGATTGGATCTGCCTCCTAACCTTTATGAGCTCGATTCGATCAAGGCCGAAATGAAGAATGGGGTTCTCAAGGTGGTGGTTCCTAAGGTGAAAGAGGAGGAGAAGAAGAATGTGTATGAGGTGAACATTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

223

Amino Acids

24.89

Weight (kDa)

5.32

Isoelectric Point (pI)

67.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 127 - 222 9.8e-20 Hsp20/alpha crystallin family
ArsA_HSP20 PF17886 133 - 204 2.2e-06 HSP20-like domain found in ArsA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 158
AccB1I GGYRCC 1 cut(s) 271
AccB7I CCANNNNNTGG 1 cut(s) 316
AccI GTMKAC 1 cut(s) 168
AciI CCGC 2 cut(s) 172, 199
AclWI GGATC 3 cut(s) 218, 370, 552
AfiI CCNNNNNNNGG 3 cut(s) 289, 316, 331
AgsI TTSAA 2 cut(s) 67, 115
AjiI CACGTC 2 cut(s) 382, 445
AjnI CCWGG 4 cut(s) 267, 288, 330, 424
AluBI AGCT 6 cut(s) 61, 92, 138, 186, 359, 568
AluI AGCT 6 cut(s) 61, 92, 138, 186, 359, 568
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 3 cut(s) 166, 246, 345
AlwI GGATC 3 cut(s) 218, 370, 552
Ama87I CYCGRG 1 cut(s) 342
AoxI GGCC 2 cut(s) 33, 582
ApeKI GCWGC 4 cut(s) 183, 335, 356, 406
AspS9I GGNCC 5 cut(s) 33, 132, 292, 307, 496
AsuHPI GGTGA 2 cut(s) 637, 670
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 4 cut(s) 132, 292, 307, 496
AxyI CCTNAGG 2 cut(s) 501, 621
BanI GGYRCC 1 cut(s) 271
BanII GRGCYC 1 cut(s) 570
Bbv12I GWGCWC 1 cut(s) 570
BbvCI CCTCAGC 1 cut(s) 410
BbvI GCAGC 4 cut(s) 195, 322, 368, 393
BccI CCATC 2 cut(s) 298, 409
BceAI ACGGC 1 cut(s) 186
BciT130I CCWGG 4 cut(s) 269, 290, 332, 426
BcoDI GTCTC 3 cut(s) 166, 246, 345
BfaI CTAG 1 cut(s) 534
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 5 cut(s) 184, 199, 336, 357, 407
BlsI GCNGC 5 cut(s) 185, 200, 337, 358, 408
Bme1390I CCNGG 4 cut(s) 269, 290, 332, 426
Bme18I GGWCC 4 cut(s) 132, 292, 307, 496
BmeT110I CYCGRG 1 cut(s) 342
BmgBI CACGTC 2 cut(s) 382, 445
BmgT120I GGNCC 5 cut(s) 33, 132, 292, 307, 496
BmiI GGNNCC 3 cut(s) 273, 498, 618
BmrFI CCNGG 4 cut(s) 269, 290, 332, 426
Bpu10I CCTNAGC 2 cut(s) 284, 410
BpuEI CTTGAG 2 cut(s) 452, 590
BsaJI CCNNGG 1 cut(s) 425
BsaWI WCCGGW 1 cut(s) 153
Bsc4I CCNNNNNNNGG 3 cut(s) 289, 316, 331
Bse21I CCTNAGG 2 cut(s) 501, 621
Bse3DI GCAATG 1 cut(s) 401
BseBI CCWGG 4 cut(s) 269, 290, 332, 426
BseDI CCNNGG 1 cut(s) 425
BseGI GGATG 3 cut(s) 38, 420, 511
BseLI CCNNNNNNNGG 3 cut(s) 289, 316, 331
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 4 cut(s) 40, 275, 401, 492
BseRI GAGGAG 5 cut(s) 360, 498, 538, 647, 650
BseXI GCAGC 4 cut(s) 195, 322, 368, 393
BsgI GTGCAG 1 cut(s) 375
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 2 cut(s) 35, 584
BshNI GGYRCC 1 cut(s) 271
BsiEI CGRYCG 1 cut(s) 172
BsiHKAI GWGCWC 1 cut(s) 570
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 1 cut(s) 154
BslFI GGGAC 2 cut(s) 392, 455
BslI CCNNNNNNNGG 3 cut(s) 289, 316, 331
BsmAI GTCTC 3 cut(s) 166, 246, 345
BsmBI CGTCTC 2 cut(s) 166, 345
BsmFI GGGAC 2 cut(s) 392, 455
BsnI GGCC 2 cut(s) 35, 584
BsoBI CYCGRG 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 4 cut(s) 223, 362, 544, 576
BspACI CCGC 2 cut(s) 172, 199
BspANI GGCC 2 cut(s) 35, 584
BspCNI CTCAG 4 cut(s) 39, 276, 402, 493
BspLI GGNNCC 3 cut(s) 273, 498, 618
BspPI GGATC 3 cut(s) 218, 370, 552
BspQI GCTCTTC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 401
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 4 cut(s) 223, 362, 544, 576
Bst2UI CCWGG 4 cut(s) 269, 290, 332, 426
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 4 cut(s) 56, 68, 78, 364
BstDEI CTNAG 5 cut(s) 26, 284, 410, 501, 621
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 38, 420, 511
BstKTI GATC 4 cut(s) 226, 365, 547, 579
BstMAI GTCTC 3 cut(s) 166, 246, 345
BstMBI GATC 4 cut(s) 223, 362, 544, 576
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 180
BstNI CCWGG 4 cut(s) 269, 290, 332, 426
BstNSI RCATGY 1 cut(s) 424
BstSCI CCNGG 4 cut(s) 267, 288, 330, 424
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 4 cut(s) 195, 322, 368, 393
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
Bsu36I CCTNAGG 2 cut(s) 501, 621
BsuRI GGCC 2 cut(s) 35, 584
BtrI CACGTC 2 cut(s) 382, 445
BtsCI GGATG 3 cut(s) 38, 420, 511
Cfr13I GGNCC 5 cut(s) 33, 132, 292, 307, 496
CseI GACGC 3 cut(s) 148, 327, 407
CsiI ACCWGGT 1 cut(s) 267
CviAII CATG 2 cut(s) 316, 421
DdeI CTNAG 5 cut(s) 26, 284, 410, 501, 621
DpnI GATC 4 cut(s) 225, 364, 546, 578
DpnII GATC 4 cut(s) 223, 362, 544, 576
DrdI GACNNNNNNGTC 1 cut(s) 158
DseDI GACNNNNNNGTC 1 cut(s) 158
Eam1104I CTCTTC 4 cut(s) 56, 68, 78, 364
EarI CTCTTC 4 cut(s) 56, 68, 78, 364
Ecl136II GAGCTC 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 570
Eco47I GGWCC 4 cut(s) 132, 292, 307, 496
Eco53kI GAGCTC 1 cut(s) 568
Eco81I CCTNAGG 2 cut(s) 501, 621
Eco88I CYCGRG 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 568
EcoNI CCTNNNNNAGG 1 cut(s) 287
EcoO109I RGGNCCY 3 cut(s) 33, 292, 496
EcoRII CCWGG 4 cut(s) 267, 288, 330, 424
EcoT38I GRGCYC 1 cut(s) 570
Esp3I CGTCTC 2 cut(s) 166, 345
FaeI CATG 2 cut(s) 319, 424
FaiI YATR 6 cut(s) 212, 317, 328, 422, 564, 654
FaqI GGGAC 2 cut(s) 392, 455
FatI CATG 2 cut(s) 315, 420
FblI GTMKAC 1 cut(s) 168
Fnu4HI GCNGC 5 cut(s) 184, 199, 336, 357, 407
FokI GGATG 3 cut(s) 25, 427, 518
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 5 cut(s) 184, 199, 336, 357, 407
FspBI CTAG 1 cut(s) 534
GluI GCNGC 5 cut(s) 184, 199, 336, 357, 407
HaeIII GGCC 2 cut(s) 35, 584
HapII CCGG 1 cut(s) 154
HgaI GACGC 3 cut(s) 148, 327, 407
Hin1II CATG 2 cut(s) 319, 424
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 5 cut(s) 239, 247, 348, 528, 572
HpaII CCGG 1 cut(s) 154
HphI GGTGA 2 cut(s) 637, 670
Hpy166II GTNNAC 2 cut(s) 169, 661
Hpy188I TCNGA 3 cut(s) 29, 246, 264
Hpy188III TCNNGA 2 cut(s) 342, 366
Hpy8I GTNNAC 2 cut(s) 169, 661
Hpy99I CGWCG 5 cut(s) 146, 149, 170, 398, 401
HpyAV CCTTC 7 cut(s) 24, 121, 379, 430, 442, 482, 509
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 2 cut(s) 381, 444
HpyCH4V TGCA 2 cut(s) 254, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 180
HpyF3I CTNAG 5 cut(s) 26, 284, 410, 501, 621
HpySE526I ACGT 2 cut(s) 381, 444
Hsp92II CATG 2 cut(s) 319, 424
Kzo9I GATC 4 cut(s) 223, 362, 544, 576
LguI GCTCTTC 1 cut(s) 68
LmnI GCTCC 4 cut(s) 97, 113, 156, 460
Lsp1109I GCAGC 4 cut(s) 195, 322, 368, 393
MabI ACCWGGT 1 cut(s) 267
MaeI CTAG 1 cut(s) 534
MaeII ACGT 2 cut(s) 381, 444
MaeIII GTNAC 1 cut(s) 203
MalI GATC 4 cut(s) 225, 364, 546, 578
MboI GATC 4 cut(s) 223, 362, 544, 576
MboII GAAGA 9 cut(s) 43, 55, 65, 381, 521, 524, 604, 652, 655
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 1 cut(s) 311
MlyI GAGTC 3 cut(s) 248, 256, 357
MseI TTAA 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 1 cut(s) 154
MspR9I CCNGG 4 cut(s) 269, 290, 332, 426
MvaI CCWGG 4 cut(s) 269, 290, 332, 426
MwoI GCNNNNNNNGC 1 cut(s) 180
NdeII GATC 4 cut(s) 223, 362, 544, 576
NlaIII CATG 2 cut(s) 319, 424
NlaIV GGNNCC 3 cut(s) 273, 498, 618
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 1 cut(s) 424
PaeR7I CTCGAG 1 cut(s) 342
PciSI GCTCTTC 1 cut(s) 68
PfeI GAWTC 2 cut(s) 528, 572
PflMI CCANNNNNTGG 1 cut(s) 316
PkrI GCNGC 5 cut(s) 185, 200, 337, 358, 408
PleI GAGTC 3 cut(s) 247, 255, 356
PpsI GAGTC 3 cut(s) 247, 255, 356
PpuMI RGGWCCY 2 cut(s) 292, 496
Psp124BI GAGCTC 1 cut(s) 570
Psp5II RGGWCCY 2 cut(s) 292, 496
Psp6I CCWGG 4 cut(s) 267, 288, 330, 424
PspGI CCWGG 4 cut(s) 267, 288, 330, 424
PspN4I GGNNCC 3 cut(s) 273, 498, 618
PspPI GGNCC 5 cut(s) 33, 132, 292, 307, 496
PspPPI RGGWCCY 2 cut(s) 292, 496
PsuI RGATCY 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 359
SacI GAGCTC 1 cut(s) 570
SalI GTCGAC 1 cut(s) 167
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 5 cut(s) 184, 199, 336, 357, 407
Sau3AI GATC 4 cut(s) 223, 362, 544, 576
Sau96I GGNCC 5 cut(s) 33, 132, 292, 307, 496
SchI GAGTC 3 cut(s) 248, 256, 357
ScrFI CCNGG 4 cut(s) 269, 290, 332, 426
SduI GDGCHC 1 cut(s) 570
SexAI ACCWGGT 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 210
Sfr274I CTCGAG 1 cut(s) 342
SinI GGWCC 4 cut(s) 132, 292, 307, 496
SlaI CTCGAG 1 cut(s) 342
SmlI CTYRAG 3 cut(s) 342, 431, 605
SmoI CTYRAG 3 cut(s) 342, 431, 605
Sse9I AATT 1 cut(s) 311
SsiI CCGC 2 cut(s) 172, 199
SspMI CTAG 1 cut(s) 534
SstI GAGCTC 1 cut(s) 570
StyD4I CCNGG 4 cut(s) 267, 288, 330, 424
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 2 cut(s) 384, 447
TaqI TCGA 4 cut(s) 168, 343, 570, 575
TasI AATT 1 cut(s) 311
TauI GCSGC 1 cut(s) 201
TfiI GAWTC 2 cut(s) 528, 572
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 4 cut(s) 183, 335, 356, 406
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 3 cut(s) 304, 522, 605
TspGWI ACGGA 1 cut(s) 154
Van91I CCANNNNNTGG 1 cut(s) 316
VpaK11BI GGWCC 4 cut(s) 132, 292, 307, 496
XagI CCTNNNNNAGG 1 cut(s) 287
XceI RCATGY 1 cut(s) 424
XhoI CTCGAG 1 cut(s) 342
XmiI GTMKAC 1 cut(s) 168
XspI CTAG 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.