Rroxscaffold_1G00051320

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000164
Physical Location & Seq
Reverse (-)
71949980 .. 71951176
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00051320.1

Sequence Viewer

Length: 723 bp
ATGTATGATATTCGGTCAACATGGGTGCCTGCATATGTAAATCATATGTTTTCAGCGGGATGTCAAGTAGTCGGCGAGCGAGAAAGTGGGCATGCTTTTTATAAGAGGTTTGTTTCTAAAGAAAACACATTGCTAGATTTTATGGTTCAGTTTAATCGGGCTGTCACACGTCAACGACATATGGAATTAATGGAGGACCATGTTGACATCAATGAGAAGCCAAATTTTGCCTCACCCTTTGAGATGGCAGAGCAAATGGCTCGTGTTTACACACATGAATGTTTTAAAGAATTTTATGATCAGTTGTCGCACTGCAAAAAATTTGAGACGGCTGGGATACCATGTAGACATATTATGGCATTTCTCATATTTATACGACTTGTTGATAGATTGCCAGATCAATACATCTTAAAGAGGTGGACGAAATCAGGAAAAGCTGAGAGAGTTTTTGATGATCTCGGTGTGGAGATTACGGATAACGAGAGATTTGCTTGCCGGCGGAGTCGGTTATGCCAATATGTTGTAGATGTAATTGATAAGGTTATTGGTAGTGAAGAAGCGAGTGGTTTGTTTTTAGATTCATTAAAGAGTGTTCGGAGCAAGTATAATTCCATGGTGGCTGATGGCGAGACTGTTAAGTCCGCAATAGTAGAGGATAGAAGTGACCCGAGTACCGATGAGGAAGAGTATTCCAGCCAGCACAGAGTTGATGAGTCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

240

Amino Acids

27.94

Weight (kDa)

5.55

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 102
AasI GACNNNNNNGTC 1 cut(s) 637
AccB1I GGYRCC 1 cut(s) 25
AccI GTMKAC 1 cut(s) 346
AciI CCGC 3 cut(s) 56, 499, 642
AcsI RAATTY 3 cut(s) 223, 290, 320
AfaI GTAC 1 cut(s) 673
AflIII ACRYGT 1 cut(s) 167
AjiI CACGTC 1 cut(s) 170
AluBI AGCT 1 cut(s) 437
AluI AGCT 1 cut(s) 437
Alw26I GTCTC 2 cut(s) 320, 623
Ama87I CYCGRG 1 cut(s) 667
ApoI RAATTY 3 cut(s) 223, 290, 320
AseI ATTAAT 1 cut(s) 188
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 225
AvaI CYCGRG 1 cut(s) 667
AvaII GGWCC 1 cut(s) 196
BaeI ACNNNNGTAYC 2 cut(s) 655, 688
BanI GGYRCC 1 cut(s) 25
BauI CACGAG 1 cut(s) 261
BccI CCATC 2 cut(s) 238, 617
BceAI ACGGC 1 cut(s) 345
BcgI CGANNNNNNTGC 4 cut(s) 242, 276, 470, 504
BciVI GTATCC 1 cut(s) 330
BclI TGATCA 1 cut(s) 298
BcoDI GTCTC 2 cut(s) 320, 623
BfaI CTAG 1 cut(s) 134
BfuI GTATCC 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 196
BmeT110I CYCGRG 1 cut(s) 667
BmgBI CACGTC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 612
Bse118I RCCGGY 1 cut(s) 495
Bse3DI GCAATG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 612
BseGI GGATG 1 cut(s) 65
BseMI GCAATG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 429
BseYI CCCAGC 1 cut(s) 332
BshNI GGYRCC 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 667
BsiSI CCGG 1 cut(s) 496
BsmAI GTCTC 2 cut(s) 320, 623
BsmBI CGTCTC 1 cut(s) 320
BsoBI CYCGRG 1 cut(s) 667
Bsp143I GATC 3 cut(s) 298, 397, 454
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 3 cut(s) 56, 499, 642
BspCNI CTCAG 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 495
BssAI RCCGGY 1 cut(s) 495
BssECI CCNNGG 1 cut(s) 612
BssMI GATC 3 cut(s) 298, 397, 454
BssSI CACGAG 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 612
Bst2BI CACGAG 1 cut(s) 261
Bst4CI ACNGT 1 cut(s) 634
Bst6I CTCTTC 1 cut(s) 678
BstC8I GCNNGC 6 cut(s) 30, 77, 93, 493, 497, 698
BstDEI CTNAG 1 cut(s) 438
BstDSI CCRYGG 1 cut(s) 612
BstF5I GGATG 1 cut(s) 65
BstKTI GATC 3 cut(s) 301, 400, 457
BstMAI GTCTC 2 cut(s) 320, 623
BstMBI GATC 3 cut(s) 298, 397, 454
BstNSI RCATGY 1 cut(s) 95
BsuI GTATCC 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 612
BtrI CACGTC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 65
BtsI GCAGTG 1 cut(s) 310
BtsIMutI CAGTG 1 cut(s) 310
Cac8I GCNNGC 6 cut(s) 30, 77, 93, 493, 497, 698
Cfr10I RCCGGY 1 cut(s) 495
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 1 cut(s) 672
CviAII CATG 6 cut(s) 21, 92, 200, 275, 342, 613
CviJI RGCY 7 cut(s) 161, 220, 260, 332, 437, 620, 696
CviKI_1 RGCY 7 cut(s) 161, 220, 260, 332, 437, 620, 696
CviQI GTAC 1 cut(s) 672
DdeI CTNAG 1 cut(s) 438
DpnI GATC 3 cut(s) 300, 399, 456
DpnII GATC 3 cut(s) 298, 397, 454
DraI TTTAAA 1 cut(s) 286
DrdI GACNNNNNNGTC 1 cut(s) 637
DseDI GACNNNNNNGTC 1 cut(s) 637
Eam1104I CTCTTC 1 cut(s) 678
EarI CTCTTC 1 cut(s) 678
EciI GGCGGA 1 cut(s) 514
Eco130I CCWWGG 1 cut(s) 612
Eco47I GGWCC 1 cut(s) 196
Eco88I CYCGRG 1 cut(s) 667
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
Esp3I CGTCTC 1 cut(s) 320
FaeI CATG 6 cut(s) 24, 95, 203, 278, 345, 616
FatI CATG 6 cut(s) 20, 91, 199, 274, 341, 612
FauI CCCGC 1 cut(s) 49
FauNDI CATATG 3 cut(s) 34, 45, 180
FbaI TGATCA 1 cut(s) 298
FblI GTMKAC 1 cut(s) 346
FokI GGATG 1 cut(s) 72
FspBI CTAG 1 cut(s) 134
GsaI CCCAGC 1 cut(s) 336
HapII CCGG 1 cut(s) 496
Hin1II CATG 6 cut(s) 24, 95, 203, 278, 345, 616
HincII GTYRAC 3 cut(s) 18, 173, 205
HindII GTYRAC 3 cut(s) 18, 173, 205
HinfI GANTC 3 cut(s) 502, 578, 713
HpaII CCGG 1 cut(s) 496
HphI GGTGA 1 cut(s) 225
Hpy166II GTNNAC 6 cut(s) 18, 173, 205, 268, 347, 420
Hpy188I TCNGA 1 cut(s) 597
Hpy188III TCNNGA 1 cut(s) 429
Hpy8I GTNNAC 6 cut(s) 18, 173, 205, 268, 347, 420
HpyCH4III ACNGT 1 cut(s) 634
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 32, 315, 719
HpyF3I CTNAG 1 cut(s) 438
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 6 cut(s) 24, 95, 203, 278, 345, 616
KroI GCCGGC 1 cut(s) 495
KroNI GCCGGC 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 298
Kzo9I GATC 3 cut(s) 298, 397, 454
LmnI GCTCC 1 cut(s) 597
LpnPI CCDG 7 cut(s) 42, 318, 408, 414, 509, 706, 710
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 163, 662
MalI GATC 3 cut(s) 300, 399, 456
MboI GATC 3 cut(s) 298, 397, 454
MboII GAAGA 2 cut(s) 566, 695
MluCI AATT 6 cut(s) 185, 223, 290, 320, 531, 607
MlyI GAGTC 2 cut(s) 511, 722
MnlI CCTC 6 cut(s) 99, 187, 241, 408, 646, 673
MroNI GCCGGC 1 cut(s) 495
MseI TTAA 6 cut(s) 153, 188, 285, 410, 584, 636
MslI CAYNNNNRTG 1 cut(s) 277
MspA1I CMGCKG 1 cut(s) 56
MspI CCGG 1 cut(s) 496
NaeI GCCGGC 1 cut(s) 497
NcoI CCATGG 1 cut(s) 612
NdeI CATATG 3 cut(s) 34, 45, 180
NdeII GATC 3 cut(s) 298, 397, 454
NgoMIV GCCGGC 1 cut(s) 495
NlaIII CATG 6 cut(s) 24, 95, 203, 278, 345, 616
NlaIV GGNNCC 1 cut(s) 27
NmuCI GTSAC 2 cut(s) 163, 662
NspI RCATGY 1 cut(s) 95
PaeI GCATGC 1 cut(s) 95
PdiI GCCGGC 1 cut(s) 497
PfeI GAWTC 1 cut(s) 578
PleI GAGTC 2 cut(s) 510, 721
PpsI GAGTC 2 cut(s) 510, 721
PshBI ATTAAT 1 cut(s) 188
PsiI TTATAA 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 196
RsaI GTAC 1 cut(s) 673
RsaNI GTAC 1 cut(s) 672
RseI CAYNNNNRTG 1 cut(s) 277
SaqAI TTAA 6 cut(s) 153, 188, 285, 410, 584, 636
Sau3AI GATC 3 cut(s) 298, 397, 454
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 2 cut(s) 511, 722
SetI ASST 5 cut(s) 110, 172, 419, 439, 543
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 277
SphI GCATGC 1 cut(s) 95
Sse9I AATT 6 cut(s) 185, 223, 290, 320, 531, 607
SsiI CCGC 3 cut(s) 56, 499, 642
SspMI CTAG 1 cut(s) 134
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 1 cut(s) 634
TaiI ACGT 1 cut(s) 172
TasI AATT 6 cut(s) 185, 223, 290, 320, 531, 607
TfiI GAWTC 1 cut(s) 578
Tru1I TTAA 6 cut(s) 153, 188, 285, 410, 584, 636
Tru9I TTAA 6 cut(s) 153, 188, 285, 410, 584, 636
TscAI CASTG 1 cut(s) 317
TseFI GTSAC 2 cut(s) 163, 662
Tsp45I GTSAC 2 cut(s) 163, 662
TspDTI ATGAA 2 cut(s) 291, 570
TspGWI ACGGA 1 cut(s) 488
TspRI CASTG 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 196
VspI ATTAAT 1 cut(s) 188
XapI RAATTY 3 cut(s) 223, 290, 320
XceI RCATGY 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 346
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.