Rmu_sc0002279.1_g000014

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002279.1
OG0000164
Physical Location & Seq
Forward (+)
93933 .. 95582
1650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002279.1_g000014.1.cds

Sequence Viewer

Length: 1566 bp
atgcctatattgcaccaagagtttgaaacaatagatgatgttgctgctttctacaatagatatgcaaaagaagcagggtttagtatcataagtcattctagtgcaaccaacaaagataatacccaacttatgagaaatgagtatgtctgttataagcaaggaacttccaaagttgaaggaggaaaatgtaagagagaattactaaaagtgggttgtaaagcaagaattgcagctgtgagaaagaaggtgtctgggagatatgcaatctctgtatttgtcgagggtcataaccacccattaacaagcccacctagagtacatttgttgagatctcaccatcgtgtttcaaaagttaacacagttcaatcacagcaactaagcttggtaaatgttcagaaacatacacagtttgaattctttggtgttcaggcagatggcattgagaatattggttgtacacagcgtgatctatataattatggaagaacttgtcgtgaagcgaagaaggggcatgatggagatctattgtacatgcattttcaaaatgagaaagaaaaagatctttctcttatctatacaatggagtcaaatgaggaaaacagagtaacaaggtgcttttgggctgactcaatttcaaaacgagcttacaacttttatggagatgtagttatctttgatactacatacaacacaaatcggtatggaatgatttttgcaccattcactggtgaacttctaaatgctatgctaggaaatgcaccagaaaatgcccccaaaatgattattactgatcaagatcttgctatgactaaagccatttcagaagcactcccacaaacatttcatagatattgcagttggcacattctaaataaattttctgaaaagctagatgcgattaaatattgggattgctaccgagactttcatagctgcacatggaattcaagtagtagagaggagtttgactcaagatggattgaaattactgagaagagtgggttgagtgataacaagtggttgaagtcaatatatgaaatttgttcgtcatggatactagcacatgtaaatcatgttttgtcagcaggaatgtcaagtagtcaaagagcagagagtcaacattctttcttcaagaattatgtctctaatcagaattcattggtggaatttatggttcagattaagaggggacttcttcaccaacgccattatgagttagaggaggatcatatcaatattgatgagaagccaaaaactgtcatgtcccttgacatagaagatcatatggctaaggtttatacacgtaagctattttatgaagttcaagaacaattgaaagagcgcttcaaatataaactagaacttctaagagaaaatgtcactccttgcgtgtttaaggttgtgagaaagaacactaatacttgtaaatcccgtgaactgatttacgaaaaagcttatgattttgcatcatgcagcagtagaaagattgagagtgaacggcttccatgtcggcatgttttgtcatatttgattaaaatccaagatgttggtaaattgcctatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

521

Amino Acids

60.7

Weight (kDa)

8.64

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
AccB7I CCANNNNNTGG 1 cut(s) 725
AclWI GGATC 1 cut(s) 1233
AcsI RAATTY 6 cut(s) 413, 875, 943, 1038, 1153, 1166
AdeI CACNNNGTG 1 cut(s) 464
AfaI GTAC 3 cut(s) 318, 457, 530
AfeI AGCGCT 1 cut(s) 1343
AfiI CCNNNNNNNGG 1 cut(s) 725
AflIII ACRYGT 2 cut(s) 1063, 1301
AleI CACNNNNGTG 1 cut(s) 339
AluBI AGCT 7 cut(s) 233, 381, 644, 889, 933, 1309, 1454
AluI AGCT 7 cut(s) 233, 381, 644, 889, 933, 1309, 1454
Alw26I GTCTC 2 cut(s) 915, 1147
AlwI GGATC 1 cut(s) 1233
Aor51HI AGCGCT 1 cut(s) 1343
ApeKI GCWGC 4 cut(s) 44, 230, 933, 1473
ApoI RAATTY 6 cut(s) 413, 875, 943, 1038, 1153, 1166
Asp700I GAANNNNTTC 1 cut(s) 1500
AspLEI GCGC 1 cut(s) 1344
AsuHPI GGTGA 3 cut(s) 326, 740, 1190
BbvI GCAGC 4 cut(s) 31, 242, 920, 1485
BccI CCATC 4 cut(s) 345, 428, 509, 969
BceAI ACGGC 1 cut(s) 1514
BciVI GTATCC 1 cut(s) 1047
BclI TGATCA 1 cut(s) 790
BcoDI GTCTC 2 cut(s) 915, 1147
BfaI CTAG 6 cut(s) 99, 312, 749, 890, 1058, 1358
BfoI RGCGCY 1 cut(s) 1345
BfuI GTATCC 1 cut(s) 1047
BglII AGATCT 4 cut(s) 329, 520, 559, 796
BisI GCNGC 4 cut(s) 45, 231, 934, 1474
BlsI GCNGC 4 cut(s) 46, 232, 935, 1475
BmsI GCATC 2 cut(s) 883, 1475
BplI GAGNNNNNCTC 2 cut(s) 953, 985
Bpu10I CCTNAGC 1 cut(s) 1290
BpuEI CTTGAG 1 cut(s) 955
BsaAI YACGTR 1 cut(s) 1304
BsaBI GATNNNNATC 3 cut(s) 519, 795, 1535
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 1 cut(s) 725
Bse1I ACTGG 1 cut(s) 730
Bse8I GATNNNNATC 3 cut(s) 519, 795, 1535
BseJI GATNNNNATC 3 cut(s) 519, 795, 1535
BseLI CCNNNNNNNGG 1 cut(s) 725
BseMII CTCAG 1 cut(s) 981
BseNI ACTGG 1 cut(s) 730
BseRI GAGGAG 2 cut(s) 974, 1235
BseXI GCAGC 4 cut(s) 31, 242, 920, 1485
BsgI GTGCAG 1 cut(s) 919
BslFI GGGAC 2 cut(s) 1203, 1249
BslI CCNNNNNNNGG 1 cut(s) 725
BsmAI GTCTC 2 cut(s) 915, 1147
BsmFI GGGAC 2 cut(s) 1203, 1249
Bsp1407I TGTACA 2 cut(s) 455, 528
Bsp143I GATC 8 cut(s) 329, 466, 520, 559, 790, 796, 1225, 1279
BspCNI CTCAG 1 cut(s) 982
BspPI GGATC 1 cut(s) 1233
BsrGI TGTACA 2 cut(s) 455, 528
BsrI ACTGG 1 cut(s) 730
BssMI GATC 8 cut(s) 329, 466, 520, 559, 790, 796, 1225, 1279
Bst4CI ACNGT 3 cut(s) 361, 408, 1258
Bst6I CTCTTC 1 cut(s) 989
BstAPI GCANNNNNTGC 1 cut(s) 227
BstAUI TGTACA 2 cut(s) 455, 528
BstBAI YACGTR 1 cut(s) 1304
BstDEI CTNAG 4 cut(s) 377, 990, 1290, 1367
BstH2I RGCGCY 1 cut(s) 1345
BstHHI GCGC 1 cut(s) 1344
BstKTI GATC 8 cut(s) 332, 469, 523, 562, 793, 799, 1228, 1282
BstMAI GTCTC 2 cut(s) 915, 1147
BstMBI GATC 8 cut(s) 329, 466, 520, 559, 790, 796, 1225, 1279
BstMWI GCNNNNNNNGC 3 cut(s) 10, 71, 227
BstNSI RCATGY 3 cut(s) 535, 1067, 1517
BstV1I GCAGC 4 cut(s) 31, 242, 920, 1485
BstX2I RGATCY 4 cut(s) 329, 520, 559, 796
BstXI CCANNNNNNTGG 1 cut(s) 1547
BstYI RGATCY 4 cut(s) 329, 520, 559, 796
BsuI GTATCC 1 cut(s) 1047
BtsIMutI CAGTG 1 cut(s) 723
CfoI GCGC 1 cut(s) 1344
Csp6I GTAC 3 cut(s) 317, 456, 529
CviQI GTAC 3 cut(s) 317, 456, 529
DdeI CTNAG 4 cut(s) 377, 990, 1290, 1367
DpnI GATC 8 cut(s) 331, 468, 522, 561, 792, 798, 1227, 1281
DpnII GATC 8 cut(s) 329, 466, 520, 559, 790, 796, 1225, 1279
DraIII CACNNNGTG 1 cut(s) 464
Eam1104I CTCTTC 1 cut(s) 989
EarI CTCTTC 1 cut(s) 989
Eco47III AGCGCT 1 cut(s) 1343
EcoRI GAATTC 3 cut(s) 413, 943, 1153
EcoT22I ATGCAT 1 cut(s) 537
FaqI GGGAC 2 cut(s) 1203, 1249
FauNDI CATATG 1 cut(s) 1284
FbaI TGATCA 1 cut(s) 790
Fnu4HI GCNGC 4 cut(s) 45, 231, 934, 1474
Fsp4HI GCNGC 4 cut(s) 45, 231, 934, 1474
FspBI CTAG 6 cut(s) 99, 312, 749, 890, 1058, 1358
GlaI GCGC 1 cut(s) 1343
GluI GCNGC 4 cut(s) 45, 231, 934, 1474
HaeII RGCGCY 1 cut(s) 1345
HhaI GCGC 1 cut(s) 1344
Hin6I GCGC 1 cut(s) 1342
HinP1I GCGC 1 cut(s) 1342
HincII GTYRAC 2 cut(s) 355, 1118
HindII GTYRAC 2 cut(s) 355, 1118
HindIII AAGCTT 2 cut(s) 379, 1452
HinfI GANTC 4 cut(s) 584, 626, 968, 1114
HpaI GTTAAC 1 cut(s) 355
HphI GGTGA 3 cut(s) 326, 740, 1190
Hpy166II GTNNAC 6 cut(s) 355, 458, 731, 1118, 1436, 1496
Hpy188I TCNGA 5 cut(s) 396, 823, 883, 1152, 1179
Hpy188III TCNNGA 5 cut(s) 494, 794, 972, 1132, 1325
Hpy8I GTNNAC 6 cut(s) 355, 458, 731, 1118, 1436, 1496
HpyAV CCTTC 3 cut(s) 170, 238, 499
HpyCH4III ACNGT 3 cut(s) 361, 408, 1258
HpyCH4IV ACGT 1 cut(s) 1303
HpyF10VI GCNNNNNNNGC 3 cut(s) 10, 71, 227
HpyF3I CTNAG 4 cut(s) 377, 990, 1290, 1367
HpySE526I ACGT 1 cut(s) 1303
HspAI GCGC 1 cut(s) 1342
Ksp22I TGATCA 1 cut(s) 790
KspAI GTTAAC 1 cut(s) 355
Kzo9I GATC 8 cut(s) 329, 466, 520, 559, 790, 796, 1225, 1279
LpnPI CCDG 6 cut(s) 60, 237, 413, 711, 774, 1071
Lsp1109I GCAGC 4 cut(s) 31, 242, 920, 1485
LweI GCATC 2 cut(s) 883, 1475
MaeI CTAG 6 cut(s) 99, 312, 749, 890, 1058, 1358
MaeII ACGT 1 cut(s) 1303
MaeIII GTNAC 2 cut(s) 604, 1378
MalI GATC 8 cut(s) 331, 468, 522, 561, 792, 798, 1227, 1281
MboI GATC 8 cut(s) 329, 466, 520, 559, 790, 796, 1225, 1279
MboII GAAGA 6 cut(s) 495, 514, 1006, 1120, 1187, 1289
MfeI CAATTG 1 cut(s) 1331
MflI RGATCY 4 cut(s) 329, 520, 559, 796
MlyI GAGTC 4 cut(s) 593, 620, 962, 1123
MnlI CCTC 7 cut(s) 173, 274, 586, 952, 1179, 1213, 1216
Mph1103I ATGCAT 1 cut(s) 537
MroXI GAANNNNTTC 1 cut(s) 1500
MseI TTAA 6 cut(s) 299, 354, 900, 1182, 1395, 1533
MslI CAYNNNNRTG 2 cut(s) 99, 339
MspA1I CMGCKG 1 cut(s) 233
MunI CAATTG 1 cut(s) 1331
MwoI GCNNNNNNNGC 3 cut(s) 10, 71, 227
NdeI CATATG 1 cut(s) 1284
NdeII GATC 8 cut(s) 329, 466, 520, 559, 790, 796, 1225, 1279
NmuCI GTSAC 1 cut(s) 1378
NsiI ATGCAT 1 cut(s) 537
NspI RCATGY 3 cut(s) 535, 1067, 1517
OliI CACNNNNGTG 1 cut(s) 339
PciI ACATGT 1 cut(s) 1063
PdmI GAANNNNTTC 1 cut(s) 1500
PflMI CCANNNNNTGG 1 cut(s) 725
PkrI GCNGC 4 cut(s) 46, 232, 935, 1475
PleI GAGTC 4 cut(s) 592, 620, 962, 1122
PpsI GAGTC 4 cut(s) 592, 620, 962, 1122
Ppu21I YACGTR 1 cut(s) 1304
PscI ACATGT 1 cut(s) 1063
PsiI TTATAA 1 cut(s) 153
PsuI RGATCY 4 cut(s) 329, 520, 559, 796
PvuII CAGCTG 1 cut(s) 233
RsaI GTAC 3 cut(s) 318, 457, 530
RsaNI GTAC 3 cut(s) 317, 456, 529
RseI CAYNNNNRTG 2 cut(s) 99, 339
SaqAI TTAA 6 cut(s) 299, 354, 900, 1182, 1395, 1533
SatI GCNGC 4 cut(s) 45, 231, 934, 1474
Sau3AI GATC 8 cut(s) 329, 466, 520, 559, 790, 796, 1225, 1279
SchI GAGTC 4 cut(s) 593, 620, 962, 1123
SfaNI GCATC 2 cut(s) 883, 1475
SmiMI CAYNNNNRTG 2 cut(s) 99, 339
SmlI CTYRAG 1 cut(s) 970
SmoI CTYRAG 1 cut(s) 970
SspI AATATT 3 cut(s) 448, 905, 1237
SspMI CTAG 6 cut(s) 99, 312, 749, 890, 1058, 1358
TaaI ACNGT 3 cut(s) 361, 408, 1258
TaiI ACGT 1 cut(s) 1306
TaqI TCGA 1 cut(s) 279
TatI WGTACW 3 cut(s) 316, 455, 528
Tru1I TTAA 6 cut(s) 299, 354, 900, 1182, 1395, 1533
Tru9I TTAA 6 cut(s) 299, 354, 900, 1182, 1395, 1533
TscAI CASTG 1 cut(s) 730
TseFI GTSAC 1 cut(s) 1378
TseI GCWGC 4 cut(s) 44, 230, 933, 1473
Tsp45I GTSAC 1 cut(s) 1378
TspDTI ATGAA 5 cut(s) 833, 917, 1050, 1146, 1332
TspRI CASTG 1 cut(s) 730
Van91I CCANNNNNTGG 1 cut(s) 725
XapI RAATTY 6 cut(s) 413, 875, 943, 1038, 1153, 1166
XceI RCATGY 3 cut(s) 535, 1067, 1517
XmnI GAANNNNTTC 1 cut(s) 1500
XspI CTAG 6 cut(s) 99, 312, 749, 890, 1058, 1358
Zsp2I ATGCAT 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.