Rmu_sc0000114.1_g000020

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000114.1
OG0000164
Physical Location & Seq
Reverse (-)
98350 .. 99135
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000114.1_g000020.1.cds

Sequence Viewer

Length: 786 bp
atgacagataataagatggttgtacctgcagaaatggagactaatgggattattgtacctgcggaaatggaaactgaacctattcaagctatccctccgtcaaaagaaaatgtctctacttcagctttctatcctcaagtaaggaatgagcttaaacccttcaagggtcagcaatttaaaacatgggaagaggcacatgttttttataccaaatatgcatatgcagctgggtttgttatacgaattggttccagtaaaaggagcagagcaactaatgagtttataaggaaagagtttttttgcaatagacaaggaaatagtccgattgaattgactggtgatgagaaaaggattcgtggtgtagtaagaaaggactgtaaggcgagaatgatagttgtgagagacaagtctggtggatttgtagtcaatatatttgatgaagctcacactcatcctatgacaagtccaaaaagaccccacttgctgaagtttaatcgtcgacttactaaagctcagagatcattatgggaacaactatccatggtaaacatacccacacaccagcaatttgacattcttagagtgcaagcaggagaatttcagtacattggttgtacacaacaagatttgtacaatcttgaaaaggataagcgtaaagagacaaaagggcatgatggagaaatgttgcatgactactttctgccagagcaagaaaaaaattatgggttctttttcacaataaaggcagattttgaaaataggattactcattgttttttgggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

261

Amino Acids

30.4

Weight (kDa)

9.04

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
Acc36I ACCTGC 2 cut(s) 34, 67
AccI GTMKAC 1 cut(s) 499
AciI CCGC 1 cut(s) 62
AcsI RAATTY 1 cut(s) 596
AcuI CTGAAG 2 cut(s) 105, 506
AfaI GTAC 5 cut(s) 24, 57, 605, 616, 632
AfiI CCNNNNNNNGG 2 cut(s) 164, 258
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 5 cut(s) 86, 163, 329, 641, 755
AluBI AGCT 6 cut(s) 89, 125, 151, 227, 443, 512
AluI AGCT 6 cut(s) 89, 125, 151, 227, 443, 512
Alw26I GTCTC 4 cut(s) 32, 118, 396, 653
ApeKI GCWGC 1 cut(s) 224
ApoI RAATTY 1 cut(s) 596
Asp700I GAANNNNTTC 2 cut(s) 81, 247
AsuHPI GGTGA 1 cut(s) 350
BbvI GCAGC 1 cut(s) 236
BccI CCATC 2 cut(s) 10, 668
BcoDI GTCTC 4 cut(s) 32, 118, 396, 653
BfmI CTRYAG 1 cut(s) 27
BfuAI ACCTGC 2 cut(s) 34, 67
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 250
BpuEI CTTGAG 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 540
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 258
Bse1I ACTGG 2 cut(s) 252, 340
BseDI CCNNGG 1 cut(s) 540
BseGI GGATG 1 cut(s) 451
BseLI CCNNNNNNNGG 2 cut(s) 164, 258
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 2 cut(s) 252, 340
BseXI GCAGC 1 cut(s) 236
BseYI CCCAGC 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 164, 258
BsmAI GTCTC 4 cut(s) 32, 118, 396, 653
Bsp1407I TGTACA 2 cut(s) 614, 630
Bsp143I GATC 1 cut(s) 518
Bsp19I CCATGG 1 cut(s) 540
BspACI CCGC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 526
BspLI GGNNCC 1 cut(s) 250
BspMAI CTGCAG 1 cut(s) 31
BspMI ACCTGC 2 cut(s) 34, 67
BsrGI TGTACA 2 cut(s) 614, 630
BsrI ACTGG 2 cut(s) 252, 340
BssECI CCNNGG 1 cut(s) 540
BssMI GATC 1 cut(s) 518
BssT1I CCWWGG 1 cut(s) 540
Bst4CI ACNGT 1 cut(s) 377
Bst6I CTCTTC 1 cut(s) 183
BstAUI TGTACA 2 cut(s) 614, 630
BstC8I GCNNGC 1 cut(s) 588
BstDEI CTNAG 2 cut(s) 513, 578
BstDSI CCRYGG 1 cut(s) 540
BstF5I GGATG 1 cut(s) 451
BstKTI GATC 1 cut(s) 521
BstMAI GTCTC 4 cut(s) 32, 118, 396, 653
BstMBI GATC 1 cut(s) 518
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 200
BstSFI CTRYAG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 236
BtgI CCRYGG 1 cut(s) 540
BtsCI GGATG 1 cut(s) 451
BveI ACCTGC 2 cut(s) 34, 67
Cac8I GCNNGC 1 cut(s) 588
Csp6I GTAC 5 cut(s) 23, 56, 604, 615, 631
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 5 cut(s) 183, 197, 541, 671, 689
CviJI RGCY 7 cut(s) 89, 125, 151, 227, 443, 512, 783
CviKI_1 RGCY 7 cut(s) 89, 125, 151, 227, 443, 512, 783
CviQI GTAC 5 cut(s) 23, 56, 604, 615, 631
DdeI CTNAG 2 cut(s) 513, 578
DpnI GATC 1 cut(s) 520
DpnII GATC 1 cut(s) 518
DraI TTTAAA 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 540
Eco57I CTGAAG 2 cut(s) 105, 506
EcoT14I CCWWGG 1 cut(s) 540
EcoT22I ATGCAT 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 5 cut(s) 186, 200, 544, 674, 692
FatI CATG 5 cut(s) 182, 196, 540, 670, 688
FauNDI CATATG 1 cut(s) 220
FblI GTMKAC 1 cut(s) 499
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 1 cut(s) 438
Fsp4HI GCNGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 225
GsaI CCCAGC 1 cut(s) 231
Hin1II CATG 5 cut(s) 186, 200, 544, 674, 692
HincII GTYRAC 1 cut(s) 500
HindII GTYRAC 1 cut(s) 500
HinfI GANTC 1 cut(s) 352
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 3 cut(s) 500, 547, 617
Hpy188I TCNGA 2 cut(s) 324, 516
Hpy188III TCNNGA 1 cut(s) 638
Hpy8I GTNNAC 3 cut(s) 500, 547, 617
Hpy99I CGWCG 1 cut(s) 501
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4V TGCA 6 cut(s) 29, 218, 224, 303, 586, 688
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 2 cut(s) 513, 578
Hsp92II CATG 5 cut(s) 186, 200, 544, 674, 692
Kzo9I GATC 1 cut(s) 518
LmnI GCTCC 1 cut(s) 261
LpnPI CCDG 9 cut(s) 39, 72, 213, 265, 321, 396, 575, 576, 717
Lsp1109I GCAGC 1 cut(s) 236
MalI GATC 1 cut(s) 520
MboI GATC 1 cut(s) 518
MboII GAAGA 1 cut(s) 200
MluCI AATT 6 cut(s) 173, 243, 329, 566, 596, 718
MnlI CCTC 3 cut(s) 105, 144, 184
Mph1103I ATGCAT 1 cut(s) 220
MroXI GAANNNNTTC 2 cut(s) 81, 247
MseI TTAA 3 cut(s) 153, 177, 492
MspA1I CMGCKG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 224
NcoI CCATGG 1 cut(s) 540
NdeI CATATG 1 cut(s) 220
NdeII GATC 1 cut(s) 518
NlaIII CATG 5 cut(s) 186, 200, 544, 674, 692
NlaIV GGNNCC 1 cut(s) 250
NsiI ATGCAT 1 cut(s) 220
NspI RCATGY 1 cut(s) 200
PciI ACATGT 1 cut(s) 196
PdmI GAANNNNTTC 2 cut(s) 81, 247
PfeI GAWTC 1 cut(s) 352
PkrI GCNGC 1 cut(s) 226
PscI ACATGT 1 cut(s) 196
PsiI TTATAA 1 cut(s) 284
PspFI CCCAGC 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 250
PstI CTGCAG 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 5 cut(s) 24, 57, 605, 616, 632
RsaNI GTAC 5 cut(s) 23, 56, 604, 615, 631
SalI GTCGAC 1 cut(s) 498
SaqAI TTAA 3 cut(s) 153, 177, 492
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 1 cut(s) 518
SetI ASST 9 cut(s) 28, 61, 82, 91, 127, 153, 229, 445, 514
SfcI CTRYAG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
Sse9I AATT 6 cut(s) 173, 243, 329, 566, 596, 718
SsiI CCGC 1 cut(s) 62
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 1 cut(s) 377
TaqI TCGA 1 cut(s) 499
TasI AATT 6 cut(s) 173, 243, 329, 566, 596, 718
TatI WGTACW 3 cut(s) 603, 614, 630
TfiI GAWTC 1 cut(s) 352
Tru1I TTAA 3 cut(s) 153, 177, 492
Tru9I TTAA 3 cut(s) 153, 177, 492
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 453
TspGWI ACGGA 1 cut(s) 87
XapI RAATTY 1 cut(s) 596
XceI RCATGY 1 cut(s) 200
XmiI GTMKAC 1 cut(s) 499
XmnI GAANNNNTTC 2 cut(s) 81, 247
Zsp2I ATGCAT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.