FvH4_4g06321

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000164
Physical Location & Seq
Reverse (-)
5627044 .. 5628152
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g06321.t1

Sequence Viewer

Length: 717 bp
ATGGAGGTCCAAATGGCTCATCTGTATACCAAAAAGTACTTCCAGTACTTTCAAGCTCAGCTTTATGATGGTAATAGTTATATCATAGAATCTGAAATGGAAGATGACAGTCATGGTGTTTACAAGACTAAAAGAGTGTTTGCTCGAAACCTTAGGATGCGGACACTTATACATGATAAGGTATCAAACATAGTGACATGCAGTTGCAGAATGTTTGAATTTGAAGGTATTCCTTGCAGACATGTTTTGGCTTTCCTACGAGTGAAACAGATTATGGAATTGCCAAAAGAATATATTTTGCGAAGATGGACAAGGTATTCAAGAATTCGTAAGGAGAGGTGTCAAAGGCAAGATGGTGCAGACAATTCATTAATAATGAGACACAATGGTATGTTCAAAATTGCTTCCAGTTTAATTGATGAGGCTGCGATTTCACCTGAGGGGACTGAACTTGTGAAAAAAGCATTTGAAGGACTTATGGAGCAAATTAAGAAATTAAATCTTTCAGCTGAGCAATCTTCTACCAACAATTCTACAATTGGATCCTATGAAGAAAATCGTTTCCTAGATCCTTCTCAAGTGAAGACTAAAGTTAAGAGAAGGAAGCATGTTTCAGGAATTTTTTGGCTTAAAGGTGATGTTGGCAATGAAGAGCGTGTTTTAGAATTTCTAACTGCTATTTCGTGCATGGTGCACTTTGGAGCTTTGGTTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

239

Amino Acids

27.81

Weight (kDa)

9.22

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 64 - 84 8.8e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 26
AciI CCGC 1 cut(s) 160
AclWI GGATC 3 cut(s) 537, 550, 563
AcsI RAATTY 4 cut(s) 218, 324, 618, 665
AfaI GTAC 2 cut(s) 38, 47
AflIII ACRYGT 1 cut(s) 241
AgsI TTSAA 6 cut(s) 53, 218, 224, 321, 397, 470
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AloI GAACNNNNNNTCC 1 cut(s) 693
AluBI AGCT 4 cut(s) 56, 61, 509, 704
AluI AGCT 4 cut(s) 56, 61, 509, 704
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 1 cut(s) 373
Alw44I GTGCAC 1 cut(s) 692
AlwI GGATC 3 cut(s) 537, 550, 563
ApaLI GTGCAC 1 cut(s) 692
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 4 cut(s) 218, 324, 618, 665
AseI ATTAAT 1 cut(s) 371
Asp700I GAANNNNTTC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 2 cut(s) 426, 647
AvaII GGWCC 1 cut(s) 7
AxyI CCTNAGG 2 cut(s) 152, 438
BaeGI GKGCMC 1 cut(s) 696
BamHI GGATCC 1 cut(s) 542
BbsI GAAGAC 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 1 cut(s) 412
BccI CCATC 3 cut(s) 62, 300, 347
BcoDI GTCTC 1 cut(s) 373
BfaI CTAG 1 cut(s) 566
BisI GCNGC 1 cut(s) 426
BlpI GCTNAGC 2 cut(s) 57, 510
BlsI GCNGC 1 cut(s) 427
BmcAI AGTACT 2 cut(s) 38, 47
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 1 cut(s) 544
BmsI GCATC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 590
Bpu1102I GCTNAGC 2 cut(s) 57, 510
BpuEI CTTGAG 1 cut(s) 561
BsaXI ACNNNNNCTCC 1 cut(s) 693
Bse1I ACTGG 2 cut(s) 43, 408
Bse21I CCTNAGG 2 cut(s) 152, 438
Bse3DI GCAATG 1 cut(s) 652
BseGI GGATG 1 cut(s) 162
BseMI GCAATG 1 cut(s) 652
BseMII CTCAG 3 cut(s) 71, 429, 501
BseNI ACTGG 2 cut(s) 43, 408
BseSI GKGCMC 1 cut(s) 696
BseXI GCAGC 1 cut(s) 412
BsgI GTGCAG 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 696
BslFI GGGAC 1 cut(s) 457
BsmAI GTCTC 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 457
Bsp1286I GDGCHC 1 cut(s) 696
Bsp143I GATC 2 cut(s) 542, 568
Bsp1720I GCTNAGC 2 cut(s) 57, 510
BspACI CCGC 1 cut(s) 160
BspCNI CTCAG 3 cut(s) 70, 430, 502
BspLI GGNNCC 1 cut(s) 544
BspPI GGATC 3 cut(s) 537, 550, 563
BspQI GCTCTTC 1 cut(s) 645
BsrDI GCAATG 1 cut(s) 652
BsrI ACTGG 2 cut(s) 43, 408
BssMI GATC 2 cut(s) 542, 568
BssNAI GTATAC 1 cut(s) 27
Bst1107I GTATAC 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 645
BstDEI CTNAG 4 cut(s) 57, 152, 438, 510
BstF5I GGATG 1 cut(s) 162
BstKTI GATC 2 cut(s) 545, 571
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 2 cut(s) 542, 568
BstNSI RCATGY 3 cut(s) 201, 245, 611
BstSLI GKGCMC 1 cut(s) 696
BstV1I GCAGC 1 cut(s) 412
BstV2I GAAGAC 1 cut(s) 590
BstX2I RGATCY 2 cut(s) 542, 568
BstYI RGATCY 2 cut(s) 542, 568
BstZ17I GTATAC 1 cut(s) 27
Bsu36I CCTNAGG 2 cut(s) 152, 438
BtsCI GGATG 1 cut(s) 162
Cfr13I GGNCC 1 cut(s) 7
Csp6I GTAC 2 cut(s) 37, 46
CviAII CATG 6 cut(s) 113, 173, 198, 242, 608, 688
CviJI RGCY 8 cut(s) 17, 56, 61, 251, 425, 509, 628, 704
CviKI_1 RGCY 8 cut(s) 17, 56, 61, 251, 425, 509, 628, 704
CviQI GTAC 2 cut(s) 37, 46
DdeI CTNAG 4 cut(s) 57, 152, 438, 510
DpnI GATC 2 cut(s) 544, 570
DpnII GATC 2 cut(s) 542, 568
Eam1104I CTCTTC 1 cut(s) 645
EarI CTCTTC 1 cut(s) 645
Eco47I GGWCC 1 cut(s) 7
Eco81I CCTNAGG 2 cut(s) 152, 438
EcoRI GAATTC 1 cut(s) 324
FaeI CATG 6 cut(s) 116, 176, 201, 245, 611, 691
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 1 cut(s) 457
FatI CATG 6 cut(s) 112, 172, 197, 241, 607, 687
FblI GTMKAC 1 cut(s) 26
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 1 cut(s) 169
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 1 cut(s) 566
GluI GCNGC 1 cut(s) 426
Hin1II CATG 6 cut(s) 116, 176, 201, 245, 611, 691
HinfI GANTC 1 cut(s) 89
HphI GGTGA 2 cut(s) 426, 647
Hpy166II GTNNAC 3 cut(s) 27, 121, 694
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 321, 615
Hpy8I GTNNAC 3 cut(s) 27, 121, 694
HpyAV CCTTC 4 cut(s) 218, 464, 582, 594
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4V TGCA 6 cut(s) 201, 207, 237, 359, 687, 694
HpyF3I CTNAG 4 cut(s) 57, 152, 438, 510
Hsp92II CATG 6 cut(s) 116, 176, 201, 245, 611, 691
Kzo9I GATC 2 cut(s) 542, 568
LguI GCTCTTC 1 cut(s) 645
LmnI GCTCC 2 cut(s) 481, 701
LpnPI CCDG 4 cut(s) 56, 421, 450, 600
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 566
MaeIII GTNAC 1 cut(s) 193
MalI GATC 2 cut(s) 544, 570
MboI GATC 2 cut(s) 542, 568
MboII GAAGA 6 cut(s) 113, 315, 510, 563, 595, 662
MfeI CAATTG 1 cut(s) 537
MflI RGATCY 2 cut(s) 542, 568
MhlI GDGCHC 1 cut(s) 696
MnlI CCTC 3 cut(s) 330, 415, 433
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 6 cut(s) 371, 413, 489, 497, 594, 630
MspA1I CMGCKG 1 cut(s) 509
MunI CAATTG 1 cut(s) 537
NdeII GATC 2 cut(s) 542, 568
NlaIII CATG 6 cut(s) 116, 176, 201, 245, 611, 691
NlaIV GGNNCC 1 cut(s) 544
NmuCI GTSAC 1 cut(s) 193
NspI RCATGY 3 cut(s) 201, 245, 611
PciI ACATGT 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 645
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 1 cut(s) 427
PscI ACATGT 1 cut(s) 241
PshBI ATTAAT 1 cut(s) 371
PspN4I GGNNCC 1 cut(s) 544
PspPI GGNCC 1 cut(s) 7
PsuI RGATCY 2 cut(s) 542, 568
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 2 cut(s) 38, 47
RsaNI GTAC 2 cut(s) 37, 46
SapI GCTCTTC 1 cut(s) 645
SaqAI TTAA 6 cut(s) 371, 413, 489, 497, 594, 630
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 2 cut(s) 542, 568
Sau96I GGNCC 1 cut(s) 7
ScaI AGTACT 2 cut(s) 38, 47
SduI GDGCHC 1 cut(s) 696
SfaNI GCATC 1 cut(s) 147
SinI GGWCC 1 cut(s) 7
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
SsiI CCGC 1 cut(s) 160
SspMI CTAG 1 cut(s) 566
TaaI ACNGT 1 cut(s) 110
TaqI TCGA 1 cut(s) 145
TatI WGTACW 2 cut(s) 36, 45
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 6 cut(s) 371, 413, 489, 497, 594, 630
Tru9I TTAA 6 cut(s) 371, 413, 489, 497, 594, 630
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 3 cut(s) 357, 564, 663
VneI GTGCAC 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 7
VspI ATTAAT 1 cut(s) 371
XapI RAATTY 4 cut(s) 218, 324, 618, 665
XceI RCATGY 3 cut(s) 201, 245, 611
XmiI GTMKAC 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 1 cut(s) 566
ZrmI AGTACT 2 cut(s) 38, 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.