Rh6BG506100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000164
Physical Location & Seq
Reverse (-)
70379118 .. 70386569
7452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG506100.1

Sequence Viewer

Length: 291 bp
ATGAGAGAAGCTCAAGAGTCCGCTCAAGAGAGAGAAAGAGAGAGCGTCGAAGAAACAAAGAAATTTTTAGTTTTGCTGGGCAAACTTCAAAGTGCTAGCGTCTCATTTGCAGAACTGCAAGGAAAGCAAAAATTTGCTGAAAATTTTAGTGGAGATGATATAGATAATGATAGTTATTCATCACATCTATTAGAGGTTTATTCCCAGCAGCAGGTGCTAATTAGAGCTGTCTCTATTTTCCTGAAATCTATGCTTTGGGAGAACCCTGGAGAAAGAAAGGAAAATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.04

Weight (kDa)

4.81

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 23
AciI CCGC 1 cut(s) 21
AcsI RAATTY 3 cut(s) 62, 131, 142
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 1 cut(s) 265
AluBI AGCT 2 cut(s) 11, 227
AluI AGCT 2 cut(s) 11, 227
Alw26I GTCTC 2 cut(s) 106, 235
ApeKI GCWGC 1 cut(s) 208
ApoI RAATTY 3 cut(s) 62, 131, 142
AsuNHI GCTAGC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 267
BcoDI GTCTC 2 cut(s) 106, 235
BfaI CTAG 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 202
BisI GCNGC 1 cut(s) 209
BlsI GCNGC 1 cut(s) 210
Bme1390I CCNGG 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 267
BmtI GCTAGC 1 cut(s) 99
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 265
Bsc4I CCNNNNNNNGG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 267
BseDI CCNNGG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 220
BseYI CCCAGC 2 cut(s) 76, 204
BslI CCNNNNNNNGG 1 cut(s) 211
BsmAI GTCTC 2 cut(s) 106, 235
BsmBI CGTCTC 1 cut(s) 106
BspACI CCGC 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 202
BspOI GCTAGC 1 cut(s) 99
BsrBI CCGCTC 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 267
BstAPI GCANNNNNTGC 1 cut(s) 214
BstC8I GCNNGC 1 cut(s) 97
BstMAI GTCTC 2 cut(s) 106, 235
BstMWI GCNNNNNNNGC 2 cut(s) 124, 214
BstNI CCWGG 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 220
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 1 cut(s) 97
CseI GACGC 2 cut(s) 34, 88
CviJI RGCY 2 cut(s) 11, 227
CviKI_1 RGCY 2 cut(s) 11, 227
EcoRII CCWGG 1 cut(s) 265
Esp3I CGTCTC 1 cut(s) 106
FaiI YATR 2 cut(s) 161, 251
Fnu4HI GCNGC 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 209
FspBI CTAG 1 cut(s) 96
GluI GCNGC 1 cut(s) 209
GsaI CCCAGC 2 cut(s) 80, 208
GsuI CTGGAG 1 cut(s) 288
HgaI GACGC 2 cut(s) 34, 88
HinfI GANTC 1 cut(s) 17
Hpy188III TCNNGA 3 cut(s) 14, 26, 241
Hpy99I CGWCG 1 cut(s) 50
HpyCH4V TGCA 2 cut(s) 110, 118
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 214
LpnPI CCDG 6 cut(s) 62, 197, 218, 252, 254, 279
Lsp1109I GCAGC 1 cut(s) 220
MaeI CTAG 1 cut(s) 96
MbiI CCGCTC 1 cut(s) 23
MboII GAAGA 1 cut(s) 62
MluCI AATT 4 cut(s) 62, 131, 142, 219
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 1 cut(s) 187
MspR9I CCNGG 1 cut(s) 267
MvaI CCWGG 1 cut(s) 267
MwoI GCNNNNNNNGC 2 cut(s) 124, 214
NheI GCTAGC 1 cut(s) 95
PaqCI CACCTGC 1 cut(s) 202
PkrI GCNGC 1 cut(s) 210
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 265
PspFI CCCAGC 2 cut(s) 76, 204
PspGI CCWGG 1 cut(s) 265
SatI GCNGC 1 cut(s) 209
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 267
SetI ASST 4 cut(s) 13, 198, 216, 229
SmlI CTYRAG 2 cut(s) 12, 24
SmoI CTYRAG 2 cut(s) 12, 24
Sse9I AATT 4 cut(s) 62, 131, 142, 219
SsiI CCGC 1 cut(s) 21
SspMI CTAG 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 265
TaqI TCGA 1 cut(s) 48
TasI AATT 4 cut(s) 62, 131, 142, 219
TseI GCWGC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 168
XapI RAATTY 3 cut(s) 62, 131, 142
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.