Rmu_sc0005223.1_g000020

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005223.1
OG0000164
Physical Location & Seq
Forward (+)
69451 .. 70903
1453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005223.1_g000020.1.cds

Sequence Viewer

Length: 876 bp
atgataattactgatcaagatcctgctatgaagattgccattgcccaagttcttcctaacacattccataggtattgcagctggcacatattaaataagttttatgaaaagataggtgctgtcaaatgtaatgattattatgaagactttaaaagctatgtatggaactcggagatgacaggagaatttgataagaagtggaaggaagttgttgagaggagtagcttaagtgacaatggatggcttcaatcagtttatgaaattcgagcatcatgggtgcctgcatactgtaatcacattttctcggctggaatgtcaagtagccaacgtgctgaaagttgtcattcatttttcaagaagtatattgaccacaaaaattcattactagactttgtgattcgctttaatagaggacttgtacatcaacgtcatcaagagttagtttttacccatattgatgttaatgaagagcctcagttgaatactcctcatcctatggaatctcaaatgtctggaatttatactcgtgcatgtttccaacaatttcaaaatacgaatgcattggtggtgaagcgtagtaaattatttcatcatgcttcacttgttattgacaaagtccttacaagtcctgatgaagctcagaccatgtttctcgagacacttgacaatgtgcttgataagctcaaacaaatgcaagtcaatagtagtgaaagtgtgagtatcggtaagaagttgccaagtgatgttcaacatagttctcttcttgacaaatctggggacaaggagtcaggttcctttgcggaagatgatgacgagccaatatcaactgatgaagataaggactccagttcctttgatgaaaatgatgacaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

291

Amino Acids

33.52

Weight (kDa)

5.2

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 277
AciI CCGC 1 cut(s) 800
AclWI GGATC 1 cut(s) 14
AcsI RAATTY 4 cut(s) 185, 261, 376, 516
AfaI GTAC 1 cut(s) 420
AflII CTTAAG 1 cut(s) 226
AgsI TTSAA 5 cut(s) 248, 355, 481, 548, 749
AhdI GACNNNNNGTC 1 cut(s) 784
AluBI AGCT 5 cut(s) 81, 156, 225, 638, 682
AluI AGCT 5 cut(s) 81, 156, 225, 638, 682
Alw26I GTCTC 1 cut(s) 650
AlwI GGATC 1 cut(s) 14
Ama87I CYCGRG 1 cut(s) 653
ApeKI GCWGC 1 cut(s) 78
ApoI RAATTY 4 cut(s) 185, 261, 376, 516
AsuHPI GGTGA 1 cut(s) 580
AvaI CYCGRG 1 cut(s) 653
BanI GGYRCC 1 cut(s) 277
BauI CACGAG 1 cut(s) 525
BbsI GAAGAC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 90
BccI CCATC 1 cut(s) 234
BclI TGATCA 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 650
BfaI CTAG 1 cut(s) 386
BfrI CTTAAG 1 cut(s) 226
BisI GCNGC 1 cut(s) 79
BlsI GCNGC 1 cut(s) 80
BmeRI GACNNNNNGTC 1 cut(s) 784
BmeT110I CYCGRG 1 cut(s) 653
BmiI GGNNCC 2 cut(s) 279, 793
BmsI GCATC 1 cut(s) 278
BpiI GAAGAC 1 cut(s) 150
BpmI CTGGAG 1 cut(s) 829
BsaBI GATNNNNATC 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 846
Bse3DI GCAATG 1 cut(s) 39
Bse8I GATNNNNATC 1 cut(s) 18
BseGI GGATG 2 cut(s) 245, 490
BseJI GATNNNNATC 1 cut(s) 18
BseMI GCAATG 1 cut(s) 39
BseMII CTCAG 2 cut(s) 488, 653
BseNI ACTGG 1 cut(s) 846
BseRI GAGGAG 2 cut(s) 232, 477
BseXI GCAGC 1 cut(s) 90
BshNI GGYRCC 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 653
BslFI GGGAC 1 cut(s) 791
BsmAI GTCTC 1 cut(s) 650
BsmFI GGGAC 1 cut(s) 791
BsmI GAATGC 1 cut(s) 562
BsoBI CYCGRG 1 cut(s) 653
Bsp1407I TGTACA 1 cut(s) 418
Bsp143I GATC 2 cut(s) 13, 19
BspACI CCGC 1 cut(s) 800
BspCNI CTCAG 2 cut(s) 487, 652
BspLI GGNNCC 2 cut(s) 279, 793
BspPI GGATC 1 cut(s) 14
BspQI GCTCTTC 1 cut(s) 462
BspT107I GGYRCC 1 cut(s) 277
BspTI CTTAAG 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 39
BsrGI TGTACA 1 cut(s) 418
BsrI ACTGG 1 cut(s) 846
BssMI GATC 2 cut(s) 13, 19
BssSI CACGAG 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 525
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 2 cut(s) 462, 765
BstAFI CTTAAG 1 cut(s) 226
BstAUI TGTACA 1 cut(s) 418
BstC8I GCNNGC 2 cut(s) 83, 282
BstDEI CTNAG 2 cut(s) 474, 639
BstF5I GGATG 2 cut(s) 245, 490
BstKTI GATC 2 cut(s) 16, 22
BstMAI GTCTC 1 cut(s) 650
BstMBI GATC 2 cut(s) 13, 19
BstMWI GCNNNNNNNGC 1 cut(s) 679
BstNSI RCATGY 1 cut(s) 534
BstV1I GCAGC 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BtsCI GGATG 2 cut(s) 245, 490
Cac8I GCNNGC 2 cut(s) 83, 282
Csp6I GTAC 1 cut(s) 419
CviAII CATG 4 cut(s) 273, 531, 593, 646
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 2 cut(s) 474, 639
DpnI GATC 2 cut(s) 15, 21
DpnII GATC 2 cut(s) 13, 19
DraI TTTAAA 1 cut(s) 151
DriI GACNNNNNGTC 1 cut(s) 784
Eam1104I CTCTTC 2 cut(s) 462, 765
Eam1105I GACNNNNNGTC 1 cut(s) 784
EarI CTCTTC 2 cut(s) 462, 765
Eco88I CYCGRG 1 cut(s) 653
EcoT22I ATGCAT 1 cut(s) 562
FaeI CATG 4 cut(s) 276, 534, 596, 649
FaqI GGGAC 1 cut(s) 791
FatI CATG 4 cut(s) 272, 530, 592, 645
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 79
FokI GGATG 2 cut(s) 252, 477
Fsp4HI GCNGC 1 cut(s) 79
FspBI CTAG 1 cut(s) 386
GluI GCNGC 1 cut(s) 79
GsuI CTGGAG 1 cut(s) 829
Hin1II CATG 4 cut(s) 276, 534, 596, 649
HinfI GANTC 4 cut(s) 397, 500, 785, 842
HphI GGTGA 1 cut(s) 580
Hpy188I TCNGA 2 cut(s) 172, 642
Hpy188III TCNNGA 8 cut(s) 17, 355, 434, 513, 629, 653, 655, 764
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 2 cut(s) 328, 427
HpyCH4V TGCA 5 cut(s) 78, 284, 530, 560, 694
HpyF10VI GCNNNNNNNGC 1 cut(s) 679
HpyF3I CTNAG 2 cut(s) 474, 639
HpySE526I ACGT 2 cut(s) 328, 427
Hsp92II CATG 4 cut(s) 276, 534, 596, 649
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 2 cut(s) 13, 19
LguI GCTCTTC 1 cut(s) 462
Lsp1109I GCAGC 1 cut(s) 90
LweI GCATC 1 cut(s) 278
MaeI CTAG 1 cut(s) 386
MaeII ACGT 2 cut(s) 328, 427
MaeIII GTNAC 1 cut(s) 230
MalI GATC 2 cut(s) 15, 21
MboI GATC 2 cut(s) 13, 19
MboII GAAGA 7 cut(s) 43, 44, 155, 479, 752, 815, 845
MflI RGATCY 1 cut(s) 19
MluCI AATT 8 cut(s) 6, 185, 261, 376, 516, 542, 581, 871
MlyI GAGTC 2 cut(s) 794, 836
MmeI TCCRAC 1 cut(s) 562
MnlI CCTC 4 cut(s) 210, 404, 483, 498
Mph1103I ATGCAT 1 cut(s) 562
MseI TTAA 6 cut(s) 92, 150, 227, 405, 462, 874
MslI CAYNNNNRTG 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 81
MspCI CTTAAG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 562
MwoI GCNNNNNNNGC 1 cut(s) 679
NdeII GATC 2 cut(s) 13, 19
NlaIII CATG 4 cut(s) 276, 534, 596, 649
NlaIV GGNNCC 2 cut(s) 279, 793
NmeAIII GCCGAG 1 cut(s) 284
NmuCI GTSAC 1 cut(s) 230
NsiI ATGCAT 1 cut(s) 562
NspI RCATGY 1 cut(s) 534
PaeR7I CTCGAG 1 cut(s) 653
PciSI GCTCTTC 1 cut(s) 462
PctI GAATGC 1 cut(s) 562
PfeI GAWTC 2 cut(s) 397, 500
PflFI GACNNNGTC 1 cut(s) 614
PkrI GCNGC 1 cut(s) 80
PleI GAGTC 2 cut(s) 793, 836
PpsI GAGTC 2 cut(s) 793, 836
PspN4I GGNNCC 2 cut(s) 279, 793
PsuI RGATCY 1 cut(s) 19
PsyI GACNNNGTC 1 cut(s) 614
PvuII CAGCTG 1 cut(s) 81
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
RseI CAYNNNNRTG 1 cut(s) 456
SapI GCTCTTC 1 cut(s) 462
SaqAI TTAA 6 cut(s) 92, 150, 227, 405, 462, 874
SatI GCNGC 1 cut(s) 79
Sau3AI GATC 2 cut(s) 13, 19
SchI GAGTC 2 cut(s) 794, 836
SfaNI GCATC 1 cut(s) 278
Sfr274I CTCGAG 1 cut(s) 653
SlaI CTCGAG 1 cut(s) 653
SmiMI CAYNNNNRTG 1 cut(s) 456
SmlI CTYRAG 2 cut(s) 226, 653
SmoI CTYRAG 2 cut(s) 226, 653
Sse9I AATT 8 cut(s) 6, 185, 261, 376, 516, 542, 581, 871
SsiI CCGC 1 cut(s) 800
SspMI CTAG 1 cut(s) 386
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 2 cut(s) 331, 430
TaqI TCGA 2 cut(s) 265, 654
TasI AATT 8 cut(s) 6, 185, 261, 376, 516, 542, 581, 871
TatI WGTACW 1 cut(s) 418
TfiI GAWTC 2 cut(s) 397, 500
Tru1I TTAA 6 cut(s) 92, 150, 227, 405, 462, 874
Tru9I TTAA 6 cut(s) 92, 150, 227, 405, 462, 874
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 1 cut(s) 78
Tsp45I GTSAC 1 cut(s) 230
Tth111I GACNNNGTC 1 cut(s) 614
Vha464I CTTAAG 1 cut(s) 226
XapI RAATTY 4 cut(s) 185, 261, 376, 516
XceI RCATGY 1 cut(s) 534
XhoI CTCGAG 1 cut(s) 653
XspI CTAG 1 cut(s) 386
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.