Rw3G020560

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000164
Physical Location & Seq
Forward (+)
24162496 .. 24163776
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G020560.1

Sequence Viewer

Length: 966 bp
ATGACAGGAGAATTTGATAAGAAGTGGAAGGAAGTTGTTGAGAGGAGTAGCTTAAGTGACAATGGATGGCTTCAATCAATTTATGACATTCGAGCATCATGGGTGCCTGCATACTGTAATCACATTTTCTCGGCTGGAATGTCAAGTAGCCAACGTGCTGAAAGTTGTCATTCATTTTTCAAGAAGTTTCAACTTATGAGAGAGGATGACAATCAAAGAGTGTATTTGGTCAAGAAAAGAAGTGATCAGATTCAAAAGGATCGGGAAATTGTTTATGACAAGCATATGGATCTTGCTTCATGTACTTGCAAAAAATTTCAAAGTGAAGGAATCCCTTGTAGGCACATCTTGGCATATTTGCTGAAAGTTCAGGAAGTAGATTACTTGCCTGACCAATACATTTTGAAGAGATGGACTAAAGTTGCAAATGCTGCTGTAGTTAAGGACCTAGATGGGTTGGTGATAACAGATACAAATGCATTGGTGGTGAAGCATAGTAAATTATTTCATCATGCTTCACTTGTTATTGACAAAGTCCTTACAAGTCCTGATGAAGCTCAGACCATGTTTCTCGAGGCACTTGACAATGTGCTTGATAAGCTCAAACAAATGCAAGTCAATAGTAGTGAAAGTGTGAGTATTGGTAAGAAGCTGCCAAGTGATGTTCAACATAGGTATAATGAGCCAAATGAAATCAAAGCGAAGGGTTCTGGAAAAAGGCTTAAGAAAACAAAGGAGAACACAAAGAGAAAGAGAAGTAGTACAAGGAAATGTCATGGATGTGGTTTGTATGGCCAATTACATGATAAACGAAATTGCCCGGCACTTAGTACGGCTAAAGATAGTTCTCTTTTTGACAAATCTGGGGACAAGGAGTCAGGTTCCTTTGCAGAAGATGATGACGAGCCAATATCAGCTGATGAAGATGAGGACTCCAGTTCCTTCGATGAAGATAATGACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

321

Amino Acids

36.56

Weight (kDa)

6.57

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 97 - 122 1.5e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AclWI GGATC 2 cut(s) 267, 297
AcoI YGGCCR 1 cut(s) 793
AcsI RAATTY 2 cut(s) 11, 314
AfaI GTAC 3 cut(s) 304, 763, 832
AflII CTTAAG 2 cut(s) 52, 722
AgsI TTSAA 7 cut(s) 74, 181, 191, 254, 320, 406, 668
AhdI GACNNNNNGTC 1 cut(s) 874
AluBI AGCT 5 cut(s) 51, 557, 601, 652, 917
AluI AGCT 5 cut(s) 51, 557, 601, 652, 917
AlwI GGATC 2 cut(s) 267, 297
Ama87I CYCGRG 1 cut(s) 572
AoxI GGCC 1 cut(s) 793
ApeKI GCWGC 2 cut(s) 431, 652
ApoI RAATTY 2 cut(s) 11, 314
AspS9I GGNCC 1 cut(s) 445
AsuC2I CCSGG 1 cut(s) 821
AsuHPI GGTGA 2 cut(s) 472, 499
AvaI CYCGRG 1 cut(s) 572
AvaII GGWCC 1 cut(s) 445
BalI TGGCCA 1 cut(s) 795
BanI GGYRCC 1 cut(s) 103
BbvI GCAGC 2 cut(s) 418, 639
BccI CCATC 3 cut(s) 60, 405, 446
BceAI ACGGC 1 cut(s) 849
BclI TGATCA 1 cut(s) 244
BcnI CCSGG 1 cut(s) 821
BfaI CTAG 1 cut(s) 449
BfmI CTRYAG 1 cut(s) 435
BfrI CTTAAG 2 cut(s) 52, 722
BisI GCNGC 2 cut(s) 432, 653
BlsI GCNGC 2 cut(s) 433, 654
Bme1390I CCNGG 1 cut(s) 821
Bme18I GGWCC 1 cut(s) 445
BmeRI GACNNNNNGTC 1 cut(s) 874
BmeT110I CYCGRG 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 2 cut(s) 105, 883
BmrFI CCNGG 1 cut(s) 821
BmsI GCATC 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 919
BpuMI CCSGG 1 cut(s) 821
BsaBI GATNNNNATC 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 936
Bse8I GATNNNNATC 1 cut(s) 210
BseGI GGATG 3 cut(s) 71, 211, 785
BseJI GATNNNNATC 1 cut(s) 210
BseMII CTCAG 1 cut(s) 572
BseNI ACTGG 1 cut(s) 936
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 418, 639
BshFI GGCC 1 cut(s) 795
BshNI GGYRCC 1 cut(s) 103
BsiHKCI CYCGRG 1 cut(s) 572
BsiSI CCGG 1 cut(s) 821
BslFI GGGAC 1 cut(s) 881
BsmFI GGGAC 1 cut(s) 881
BsnI GGCC 1 cut(s) 795
BsoBI CYCGRG 1 cut(s) 572
Bsp143I GATC 3 cut(s) 244, 259, 289
BspANI GGCC 1 cut(s) 795
BspCNI CTCAG 1 cut(s) 571
BspLI GGNNCC 2 cut(s) 105, 883
BspPI GGATC 2 cut(s) 267, 297
BspT107I GGYRCC 1 cut(s) 103
BspTI CTTAAG 2 cut(s) 52, 722
BsrI ACTGG 1 cut(s) 936
BssMI GATC 3 cut(s) 244, 259, 289
Bst4CI ACNGT 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 401
BstAFI CTTAAG 2 cut(s) 52, 722
BstAPI GCANNNNNTGC 1 cut(s) 431
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 558, 827
BstF5I GGATG 3 cut(s) 71, 211, 785
BstKTI GATC 3 cut(s) 247, 262, 292
BstMBI GATC 3 cut(s) 244, 259, 289
BstMWI GCNNNNNNNGC 2 cut(s) 431, 598
BstSCI CCNGG 1 cut(s) 819
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 2 cut(s) 418, 639
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 795
BtsCI GGATG 3 cut(s) 71, 211, 785
Cac8I GCNNGC 1 cut(s) 108
Cfr13I GGNCC 1 cut(s) 445
Csp6I GTAC 3 cut(s) 303, 762, 831
CviAII CATG 6 cut(s) 99, 300, 512, 565, 776, 803
CviQI GTAC 3 cut(s) 303, 762, 831
DdeI CTNAG 2 cut(s) 558, 827
DpnI GATC 3 cut(s) 246, 261, 291
DpnII GATC 3 cut(s) 244, 259, 289
DriI GACNNNNNGTC 1 cut(s) 874
EaeI YGGCCR 1 cut(s) 793
Eam1104I CTCTTC 1 cut(s) 401
Eam1105I GACNNNNNGTC 1 cut(s) 874
EarI CTCTTC 1 cut(s) 401
Eco47I GGWCC 1 cut(s) 445
Eco88I CYCGRG 1 cut(s) 572
EcoO109I RGGNCCY 1 cut(s) 445
EcoT22I ATGCAT 1 cut(s) 481
FaeI CATG 6 cut(s) 102, 303, 515, 568, 779, 806
FaqI GGGAC 1 cut(s) 881
FatI CATG 6 cut(s) 98, 299, 511, 564, 775, 802
FauNDI CATATG 1 cut(s) 285
FbaI TGATCA 1 cut(s) 244
Fnu4HI GCNGC 2 cut(s) 432, 653
FokI GGATG 3 cut(s) 78, 218, 792
Fsp4HI GCNGC 2 cut(s) 432, 653
FspBI CTAG 1 cut(s) 449
GluI GCNGC 2 cut(s) 432, 653
GsuI CTGGAG 1 cut(s) 919
HaeIII GGCC 1 cut(s) 795
HapII CCGG 1 cut(s) 821
Hin1II CATG 6 cut(s) 102, 303, 515, 568, 779, 806
HinfI GANTC 4 cut(s) 250, 330, 875, 932
HpaII CCGG 1 cut(s) 821
HphI GGTGA 2 cut(s) 472, 499
Hpy188I TCNGA 2 cut(s) 249, 561
Hpy188III TCNNGA 7 cut(s) 181, 232, 263, 371, 548, 572, 711
HpyAV CCTTC 4 cut(s) 22, 320, 697, 952
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 6 cut(s) 110, 309, 425, 479, 613, 890
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 598
HpyF3I CTNAG 2 cut(s) 558, 827
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 6 cut(s) 102, 303, 515, 568, 779, 806
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 3 cut(s) 244, 259, 289
Lsp1109I GCAGC 2 cut(s) 418, 639
LweI GCATC 1 cut(s) 104
MaeI CTAG 1 cut(s) 449
MaeII ACGT 1 cut(s) 154
MaeIII GTNAC 1 cut(s) 56
MalI GATC 3 cut(s) 246, 261, 291
MboI GATC 3 cut(s) 244, 259, 289
MboII GAAGA 4 cut(s) 418, 905, 935, 962
MflI RGATCY 1 cut(s) 289
MlsI TGGCCA 1 cut(s) 795
MluCI AATT 8 cut(s) 11, 78, 267, 314, 500, 797, 814, 961
MluNI TGGCCA 1 cut(s) 795
MlyI GAGTC 2 cut(s) 884, 926
MnlI CCTC 4 cut(s) 36, 196, 568, 922
Mox20I TGGCCA 1 cut(s) 795
Mph1103I ATGCAT 1 cut(s) 481
MscI TGGCCA 1 cut(s) 795
MseI TTAA 4 cut(s) 53, 441, 723, 964
MslI CAYNNNNRTG 1 cut(s) 780
Msp20I TGGCCA 1 cut(s) 795
MspA1I CMGCKG 1 cut(s) 917
MspCI CTTAAG 2 cut(s) 52, 722
MspI CCGG 1 cut(s) 821
MspR9I CCNGG 1 cut(s) 821
MwoI GCNNNNNNNGC 2 cut(s) 431, 598
NciI CCSGG 1 cut(s) 821
NdeI CATATG 1 cut(s) 285
NdeII GATC 3 cut(s) 244, 259, 289
NlaIII CATG 6 cut(s) 102, 303, 515, 568, 779, 806
NlaIV GGNNCC 2 cut(s) 105, 883
NmeAIII GCCGAG 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 481
PaeR7I CTCGAG 1 cut(s) 572
PfeI GAWTC 2 cut(s) 250, 330
PflFI GACNNNGTC 1 cut(s) 533
PkrI GCNGC 2 cut(s) 433, 654
PleI GAGTC 2 cut(s) 883, 926
PpsI GAGTC 2 cut(s) 883, 926
PpuMI RGGWCCY 1 cut(s) 445
Psp5II RGGWCCY 1 cut(s) 445
PspN4I GGNNCC 2 cut(s) 105, 883
PspPI GGNCC 1 cut(s) 445
PspPPI RGGWCCY 1 cut(s) 445
PsuI RGATCY 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 533
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 3 cut(s) 304, 763, 832
RsaNI GTAC 3 cut(s) 303, 762, 831
RseI CAYNNNNRTG 1 cut(s) 780
SaqAI TTAA 4 cut(s) 53, 441, 723, 964
SatI GCNGC 2 cut(s) 432, 653
Sau3AI GATC 3 cut(s) 244, 259, 289
Sau96I GGNCC 1 cut(s) 445
SchI GAGTC 2 cut(s) 884, 926
ScrFI CCNGG 1 cut(s) 821
SetI ASST 9 cut(s) 53, 157, 450, 559, 603, 654, 677, 883, 919
SfaNI GCATC 1 cut(s) 104
SfcI CTRYAG 1 cut(s) 435
Sfr274I CTCGAG 1 cut(s) 572
SinI GGWCC 1 cut(s) 445
SlaI CTCGAG 1 cut(s) 572
SmiMI CAYNNNNRTG 1 cut(s) 780
SmlI CTYRAG 3 cut(s) 52, 572, 722
SmoI CTYRAG 3 cut(s) 52, 572, 722
Sse9I AATT 8 cut(s) 11, 78, 267, 314, 500, 797, 814, 961
SspMI CTAG 1 cut(s) 449
StyD4I CCNGG 1 cut(s) 819
TaaI ACNGT 1 cut(s) 116
TaiI ACGT 1 cut(s) 157
TaqI TCGA 3 cut(s) 91, 573, 945
TasI AATT 8 cut(s) 11, 78, 267, 314, 500, 797, 814, 961
TatI WGTACW 2 cut(s) 302, 761
TfiI GAWTC 2 cut(s) 250, 330
Tru1I TTAA 4 cut(s) 53, 441, 723, 964
Tru9I TTAA 4 cut(s) 53, 441, 723, 964
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 2 cut(s) 431, 652
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 7 cut(s) 162, 288, 497, 567, 705, 936, 963
Tth111I GACNNNGTC 1 cut(s) 533
Vha464I CTTAAG 2 cut(s) 52, 722
VpaK11BI GGWCC 1 cut(s) 445
XapI RAATTY 2 cut(s) 11, 314
XhoI CTCGAG 1 cut(s) 572
XspI CTAG 1 cut(s) 449
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.