Rw7G028490

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000164
Physical Location & Seq
Reverse (-)
38817445 .. 38818629
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G028490.1

Sequence Viewer

Length: 1020 bp
ATGAACCACATTTTCTCAGCTGGCATGTCAAGTAGTCAACTAGCAGAAAGTGTGCATTCCTTTTTTAAGGATTATGTTTCTCATAAAAATTCTCTAGTGGACTTCATGGTTCAGTTTAGTCGGGGTCTTTTACACAAACGGCATGAAGAGTTGATTTCAGATCACATTGACATCAATGAAAAGCCAAGATTTAAGTGCCCCATTAAGATGGAAAAGCAAATGGCTCCTATTTATACACAGAAGTACTATTACATATTTCAAGATCAGTTGTGGGAGAGCTACAGTTACAATCTTGAGGTCACAAAGGAGGATGAAACTAATTGTATACTTAAGGTTATGCGTCAGGATTATGAGGATGGAAGAGCCCGAGTCATTATGTATGACAAATCAAAAGATTTTGCCTCATGTAGCTGCAAATTGTTTGAGAGTGCAGGAGTCCCATGTAGACATGTTCTAGCATACTTACACAAGTTACATCAAGTTCATAAATTGCCAGATCAATACATTTTGAAGAGATGGACAAAATCTGCAAGATCTAAGATTGTGATGGACAAGATTGACATGGAGATAACTATTAGGAAGTCCTTACTTGAAAAACGTGGTTTAATGTTCCAGCAATATTCACATATAATTGATAGCATTGTCTTAAGTGAAGAAGCAAGTCAATTGTTTCGTGAAACAATGGATTCTTTGATTAAGAAGATTAGGCCACTACTTGCCAATAATAGTAGTGAAGGTGTGGAGCCTTGTGCAAAAACAAGTTCAACTCATCAGTTTGATTTTCGAGAACCAGATGAAGTTAAGACAAAAGGAAGGGCTAAAAGAATTAAGAGAGGAAAAGATAAGGAAAATGGAAAACGCAACAGTTCCGGTAGATATTGTCATGGATGTGGCAAAGATGGGCAGACCCATGACAAACTCAATTGTCCACTGCTCAATCAATCTGCTGATGTTGATACAAATGAAAATTTTAGTGAAGATGACATTGATACTGATAGTTATTCATCAAAGGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

339

Amino Acids

39.44

Weight (kDa)

7.98

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 127 - 153 8.9e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 325, 445
AcsI RAATTY 2 cut(s) 88, 967
AfaI GTAC 1 cut(s) 245
AflII CTTAAG 2 cut(s) 329, 646
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 4 cut(s) 260, 511, 593, 765
AluBI AGCT 3 cut(s) 20, 279, 411
AluI AGCT 3 cut(s) 20, 279, 411
Ama87I CYCGRG 1 cut(s) 366
AoxI GGCC 1 cut(s) 707
ApeKI GCWGC 1 cut(s) 411
ApoI RAATTY 2 cut(s) 88, 967
AvaI CYCGRG 1 cut(s) 366
BaeGI GKGCMC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 367
BarI GAAGNNNNNNTAC 2 cut(s) 233, 265
BbvI GCAGC 1 cut(s) 398
BccI CCATC 5 cut(s) 202, 350, 510, 541, 893
BceAI ACGGC 1 cut(s) 155
BfaI CTAG 3 cut(s) 41, 95, 455
BfmI CTRYAG 1 cut(s) 280
BfrI CTTAAG 2 cut(s) 329, 646
BglII AGATCT 1 cut(s) 533
BisI GCNGC 1 cut(s) 412
BlsI GCNGC 1 cut(s) 413
BmcAI AGTACT 1 cut(s) 245
BmeT110I CYCGRG 1 cut(s) 366
BmiI GGNNCC 2 cut(s) 225, 744
BpuEI CTTGAG 1 cut(s) 314
BsaWI WCCGGW 1 cut(s) 869
BseGI GGATG 4 cut(s) 316, 361, 893, 1018
BseMII CTCAG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 200
BseXI GCAGC 1 cut(s) 398
BsgI GTGCAG 1 cut(s) 450
BshFI GGCC 1 cut(s) 709
BsiHKCI CYCGRG 1 cut(s) 366
BsiSI CCGG 1 cut(s) 870
BslFI GGGAC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 422
BsmI GAATGC 1 cut(s) 55
BsnI GGCC 1 cut(s) 709
BsoBI CYCGRG 1 cut(s) 366
Bsp1286I GDGCHC 2 cut(s) 200, 367
Bsp143I GATC 4 cut(s) 160, 262, 496, 533
BspANI GGCC 1 cut(s) 709
BspCNI CTCAG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 225, 744
BspQI GCTCTTC 1 cut(s) 355
BspTI CTTAAG 2 cut(s) 329, 646
BssMI GATC 4 cut(s) 160, 262, 496, 533
BssNAI GTATAC 1 cut(s) 326
Bst1107I GTATAC 1 cut(s) 326
Bst4CI ACNGT 2 cut(s) 284, 866
Bst6I CTCTTC 3 cut(s) 141, 355, 506
BstAFI CTTAAG 2 cut(s) 329, 646
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 2 cut(s) 16, 537
BstF5I GGATG 4 cut(s) 316, 361, 893, 1018
BstKTI GATC 4 cut(s) 163, 265, 499, 536
BstMBI GATC 4 cut(s) 160, 262, 496, 533
BstNSI RCATGY 2 cut(s) 28, 452
BstSFI CTRYAG 1 cut(s) 280
BstSLI GKGCMC 1 cut(s) 200
BstV1I GCAGC 1 cut(s) 398
BstX2I RGATCY 1 cut(s) 533
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 1 cut(s) 533
BstZ17I GTATAC 1 cut(s) 326
BsuRI GGCC 1 cut(s) 709
BtsCI GGATG 4 cut(s) 316, 361, 893, 1018
BtsI GCAGTG 1 cut(s) 929
BtsIMutI CAGTG 1 cut(s) 929
Cac8I GCNNGC 1 cut(s) 22
CseI GACGC 1 cut(s) 329
Csp6I GTAC 1 cut(s) 244
CviAII CATG 9 cut(s) 25, 106, 143, 405, 441, 449, 562, 884, 911
CviJI RGCY 9 cut(s) 20, 184, 224, 279, 365, 411, 709, 745, 818
CviKI_1 RGCY 9 cut(s) 20, 184, 224, 279, 365, 411, 709, 745, 818
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 2 cut(s) 16, 537
DpnI GATC 4 cut(s) 162, 264, 498, 535
DpnII GATC 4 cut(s) 160, 262, 496, 533
Eam1104I CTCTTC 3 cut(s) 141, 355, 506
EarI CTCTTC 3 cut(s) 141, 355, 506
Eco24I GRGCYC 1 cut(s) 367
Eco88I CYCGRG 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 367
FaeI CATG 9 cut(s) 28, 109, 146, 408, 444, 452, 565, 887, 914
FaqI GGGAC 1 cut(s) 422
FatI CATG 9 cut(s) 24, 105, 142, 404, 440, 448, 561, 883, 910
FblI GTMKAC 2 cut(s) 325, 445
Fnu4HI GCNGC 1 cut(s) 412
FokI GGATG 3 cut(s) 323, 368, 900
FriOI GRGCYC 1 cut(s) 367
Fsp4HI GCNGC 1 cut(s) 412
FspBI CTAG 3 cut(s) 41, 95, 455
GluI GCNGC 1 cut(s) 412
HaeIII GGCC 1 cut(s) 709
HapII CCGG 1 cut(s) 870
HgaI GACGC 1 cut(s) 329
Hin1II CATG 9 cut(s) 28, 109, 146, 408, 444, 452, 565, 887, 914
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HinfI GANTC 3 cut(s) 369, 435, 686
HpaII CCGG 1 cut(s) 870
Hpy166II GTNNAC 5 cut(s) 38, 100, 326, 446, 929
Hpy188I TCNGA 1 cut(s) 160
Hpy188III TCNNGA 5 cut(s) 260, 293, 344, 674, 785
Hpy8I GTNNAC 5 cut(s) 38, 100, 326, 446, 929
HpyAV CCTTC 2 cut(s) 728, 807
HpyCH4III ACNGT 2 cut(s) 284, 866
HpyCH4IV ACGT 1 cut(s) 598
HpyCH4V TGCA 5 cut(s) 55, 414, 431, 530, 752
HpyF3I CTNAG 2 cut(s) 16, 537
HpySE526I ACGT 1 cut(s) 598
Hsp92II CATG 9 cut(s) 28, 109, 146, 408, 444, 452, 565, 887, 914
Kzo9I GATC 4 cut(s) 160, 262, 496, 533
LguI GCTCTTC 1 cut(s) 355
LmnI GCTCC 2 cut(s) 229, 742
LpnPI CCDG 7 cut(s) 6, 329, 417, 507, 626, 804, 883
Lsp1109I GCAGC 1 cut(s) 398
MaeI CTAG 3 cut(s) 41, 95, 455
MaeII ACGT 1 cut(s) 598
MaeIII GTNAC 3 cut(s) 284, 298, 471
MalI GATC 4 cut(s) 162, 264, 498, 535
MboI GATC 4 cut(s) 160, 262, 496, 533
MboII GAAGA 6 cut(s) 158, 372, 523, 665, 712, 989
MfeI CAATTG 2 cut(s) 665, 922
MflI RGATCY 1 cut(s) 533
MhlI GDGCHC 2 cut(s) 200, 367
MluCI AATT 9 cut(s) 88, 319, 416, 488, 630, 665, 825, 922, 967
MlyI GAGTC 2 cut(s) 378, 444
MnlI CCTC 5 cut(s) 289, 301, 346, 412, 827
MseI TTAA 9 cut(s) 66, 192, 204, 330, 605, 647, 696, 801, 828
MslI CAYNNNNRTG 2 cut(s) 206, 888
MspA1I CMGCKG 1 cut(s) 20
MspCI CTTAAG 2 cut(s) 329, 646
MspI CCGG 1 cut(s) 870
MunI CAATTG 2 cut(s) 665, 922
Mva1269I GAATGC 1 cut(s) 55
NdeII GATC 4 cut(s) 160, 262, 496, 533
NlaIII CATG 9 cut(s) 28, 109, 146, 408, 444, 452, 565, 887, 914
NlaIV GGNNCC 2 cut(s) 225, 744
NmuCI GTSAC 1 cut(s) 298
NspI RCATGY 2 cut(s) 28, 452
PciI ACATGT 1 cut(s) 448
PciSI GCTCTTC 1 cut(s) 355
PctI GAATGC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 686
PkrI GCNGC 1 cut(s) 413
PleI GAGTC 2 cut(s) 377, 443
PpsI GAGTC 2 cut(s) 377, 443
PscI ACATGT 1 cut(s) 448
PspN4I GGNNCC 2 cut(s) 225, 744
PsuI RGATCY 1 cut(s) 533
PvuII CAGCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 2 cut(s) 206, 888
SapI GCTCTTC 1 cut(s) 355
SaqAI TTAA 9 cut(s) 66, 192, 204, 330, 605, 647, 696, 801, 828
SatI GCNGC 1 cut(s) 412
Sau3AI GATC 4 cut(s) 160, 262, 496, 533
ScaI AGTACT 1 cut(s) 245
SchI GAGTC 2 cut(s) 378, 444
SduI GDGCHC 2 cut(s) 200, 367
SetI ASST 7 cut(s) 22, 281, 300, 336, 413, 601, 739
SfcI CTRYAG 1 cut(s) 280
SmiMI CAYNNNNRTG 2 cut(s) 206, 888
SmlI CTYRAG 3 cut(s) 293, 329, 646
SmoI CTYRAG 3 cut(s) 293, 329, 646
Sse9I AATT 9 cut(s) 88, 319, 416, 488, 630, 665, 825, 922, 967
SspI AATATT 1 cut(s) 620
SspMI CTAG 3 cut(s) 41, 95, 455
TaaI ACNGT 2 cut(s) 284, 866
TaiI ACGT 1 cut(s) 601
TaqI TCGA 1 cut(s) 784
TasI AATT 9 cut(s) 88, 319, 416, 488, 630, 665, 825, 922, 967
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 1 cut(s) 686
Tru1I TTAA 9 cut(s) 66, 192, 204, 330, 605, 647, 696, 801, 828
Tru9I TTAA 9 cut(s) 66, 192, 204, 330, 605, 647, 696, 801, 828
TscAI CASTG 1 cut(s) 936
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 1 cut(s) 411
Tsp45I GTSAC 1 cut(s) 298
TspDTI ATGAA 9 cut(s) 17, 94, 159, 192, 327, 473, 810, 978, 993
TspRI CASTG 1 cut(s) 936
Vha464I CTTAAG 2 cut(s) 329, 646
XapI RAATTY 2 cut(s) 88, 967
XceI RCATGY 2 cut(s) 28, 452
XmiI GTMKAC 2 cut(s) 325, 445
XspI CTAG 3 cut(s) 41, 95, 455
ZrmI AGTACT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.