Rmu_sc0004383.1_g000007

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004383.1
OG0000164
Physical Location & Seq
Reverse (-)
26226 .. 27785
1560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004383.1_g000007.1.cds

Sequence Viewer

Length: 1560 bp
atggagactgtggcaggtggtatacaaaatgttgggtgcattgtcagagatttgagaaactttgaaagagattcaagggaagaagtgaagggacatgatgcaactatgctacttgagtacttagagtcagaaaaggaaaagaagccatccttttattttgaagttgaccgagatgaagaaaatagattgaatcgttccttttgggctgatcctacctcaaaaaaagcatattatttctttaacgatgtagttgtgtttgatactacgtacaacacaaacaaatatcgtatgatctttgctccaatcacaggcgtcaaccatcatggccagacaattgtatttggttgtggacttttaagtgatgagaaaactaagtcttttatttggttactggaacaatggttgaaagctatgcctagtggtccaccgaaagttataattactgatcaagatccagcaattgcaaaagccctcgctcaagttcttccacttacactccaccgtttttgtctttggcatatcatgtttaaatttcgagataagcttggtcctgtgattgctcaaagttattatggactcttcaaagccagtgtatataactctaagactaaagaagaatttgaagctagttggaagaatgctgtgcaacaaagcaaacaagaaaatcatgcgtggttgaacacaatgtatgaactacgaagtaaatggatccctgcattttgcaatcacatcttccatgcaggtatgcaaagtagtcaaagagttgaaagtaaccactcattcttcaaatcatttgtttcagtgaacaattctttattggattttgctacaaggattaaacggggacttagacaacaaaggcatgaagaactgattcgtgatcatgttgatagtaatgaaattccaaagacaaggacttactatcccatagaaaagcaaatgcgtgaggtgtacacaaaagaaatatttttgaggtttcaagatgaggttgtcaaaagcactgcttacttgaaatgtgaaactttgaaggaggatgaaaatgaatgtgtctataatgttttaagggctgcagatgatgaacaaagctggaaattacgacaaattgttcatgacaaagtatctggttttgcaaagtgtagttgtggaggctttgaggttgaaggaattgcatgtaggcatatcattttctttcttcgaagtatgaatatggtacatttaccaagtgaatacatcttagataggtggacaaaaaatgcaaaagttggaagagtttgggatgatgatggtgtcgaagtgaaagatgtgggtgataagtcattgatgatgagatacattcagttatctcaactttcacaagctgtaattgatgaggcgtctctttcaccagaaacaacaaaatattgcacaaatggactccattctcttcgtcttggtattaaagaacttctctcaagtctgggtgttgaggaacttccatccacaaaaaaaaaagaataccacagcaaatactcattgaagaaccatctcaatcaaaggctaaagggagtgggaagaggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

519

Amino Acids

60.3

Weight (kDa)

8.47

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 437
AarI CACCTGC 1 cut(s) 5
Acc36I ACCTGC 2 cut(s) 5, 731
AccI GTMKAC 1 cut(s) 22
AclWI GGATC 4 cut(s) 203, 446, 703, 716
AcoI YGGCCR 1 cut(s) 325
AcsI RAATTY 3 cut(s) 530, 617, 900
AcyI GRCGYC 2 cut(s) 312, 1373
AfaI GTAC 4 cut(s) 119, 269, 953, 1212
AfiI CCNNNNNNNGG 1 cut(s) 308
AluBI AGCT 5 cut(s) 410, 544, 626, 1086, 1358
AluI AGCT 5 cut(s) 410, 544, 626, 1086, 1358
Alw26I GTCTC 1 cut(s) 1380
AlwI GGATC 4 cut(s) 203, 446, 703, 716
AoxI GGCC 1 cut(s) 325
ApeKI GCWGC 1 cut(s) 1067
ApoI RAATTY 3 cut(s) 530, 617, 900
Asp700I GAANNNNTTC 1 cut(s) 873
AspS9I GGNCC 2 cut(s) 422, 548
AsuHPI GGTGA 2 cut(s) 1319, 1374
AsuII TTCGAA 1 cut(s) 1195
AvaII GGWCC 2 cut(s) 422, 548
BalI TGGCCA 1 cut(s) 327
BamHI GGATCC 1 cut(s) 708
BbvI GCAGC 1 cut(s) 1054
BccI CCATC 5 cut(s) 154, 327, 1277, 1483, 1530
BclI TGATCA 2 cut(s) 445, 880
BcoDI GTCTC 1 cut(s) 1380
BfaI CTAG 2 cut(s) 417, 627
BfmI CTRYAG 1 cut(s) 1068
BfuAI ACCTGC 2 cut(s) 5, 731
BisI GCNGC 1 cut(s) 1068
BlsI GCNGC 1 cut(s) 1069
BmcAI AGTACT 1 cut(s) 119
Bme18I GGWCC 2 cut(s) 422, 548
BmgT120I GGNCC 2 cut(s) 422, 548
BmiI GGNNCC 1 cut(s) 710
BmsI GCATC 1 cut(s) 88
Bpu14I TTCGAA 1 cut(s) 1195
BpuEI CTTGAG 3 cut(s) 134, 462, 1435
BsaAI YACGTR 1 cut(s) 267
BsaBI GATNNNNATC 1 cut(s) 450
BsaHI GRCGYC 2 cut(s) 312, 1373
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse1I ACTGG 2 cut(s) 396, 588
Bse8I GATNNNNATC 1 cut(s) 450
BseGI GGATG 4 cut(s) 146, 1039, 1282, 1475
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 1 cut(s) 308
BseNI ACTGG 2 cut(s) 396, 588
BseXI GCAGC 1 cut(s) 1054
BshFI GGCC 1 cut(s) 327
BslFI GGGAC 2 cut(s) 105, 858
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 1 cut(s) 1380
BsmBI CGTCTC 1 cut(s) 1380
BsmFI GGGAC 2 cut(s) 105, 858
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 1 cut(s) 327
Bsp119I TTCGAA 1 cut(s) 1195
Bsp1407I TGTACA 1 cut(s) 951
Bsp143I GATC 6 cut(s) 208, 291, 445, 451, 708, 880
BspANI GGCC 1 cut(s) 327
BspHI TCATGA 1 cut(s) 1108
BspLI GGNNCC 1 cut(s) 710
BspMAI CTGCAG 1 cut(s) 1072
BspMI ACCTGC 2 cut(s) 5, 731
BspPI GGATC 4 cut(s) 203, 446, 703, 716
BspT104I TTCGAA 1 cut(s) 1195
BsrGI TGTACA 1 cut(s) 951
BsrI ACTGG 2 cut(s) 396, 588
BssMI GATC 6 cut(s) 208, 291, 445, 451, 708, 880
BssNAI GTATAC 1 cut(s) 23
BssNI GRCGYC 2 cut(s) 312, 1373
Bst1107I GTATAC 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 10, 503
Bst6I CTCTTC 4 cut(s) 584, 1261, 1428, 1546
BstACI GRCGYC 2 cut(s) 312, 1373
BstAUI TGTACA 1 cut(s) 951
BstBAI YACGTR 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 1195
BstDEI CTNAG 5 cut(s) 121, 372, 603, 848, 1234
BstF5I GGATG 4 cut(s) 146, 1039, 1282, 1475
BstKTI GATC 6 cut(s) 211, 294, 448, 454, 711, 883
BstMAI GTCTC 1 cut(s) 1380
BstMBI GATC 6 cut(s) 208, 291, 445, 451, 708, 880
BstNSI RCATGY 1 cut(s) 1173
BstSFI CTRYAG 1 cut(s) 1068
BstSNI TACGTA 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 1054
BstX2I RGATCY 2 cut(s) 451, 708
BstYI RGATCY 2 cut(s) 451, 708
BstZ17I GTATAC 1 cut(s) 23
BsuRI GGCC 1 cut(s) 327
BtsCI GGATG 4 cut(s) 146, 1039, 1282, 1475
BtsI GCAGTG 1 cut(s) 999
BtsIMutI CAGTG 3 cut(s) 595, 807, 999
BveI ACCTGC 2 cut(s) 5, 731
CciI TCATGA 1 cut(s) 1108
Cfr13I GGNCC 2 cut(s) 422, 548
CseI GACGC 2 cut(s) 301, 1362
Csp6I GTAC 4 cut(s) 118, 268, 952, 1211
CspCI CAANNNNNGTGG 2 cut(s) 488, 523
CviAII CATG 9 cut(s) 95, 323, 523, 668, 737, 863, 884, 1109, 1170
CviQI GTAC 4 cut(s) 118, 268, 952, 1211
DdeI CTNAG 5 cut(s) 121, 372, 603, 848, 1234
DpnI GATC 6 cut(s) 210, 293, 447, 453, 710, 882
DpnII GATC 6 cut(s) 208, 291, 445, 451, 708, 880
DraI TTTAAA 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 325
Eam1104I CTCTTC 4 cut(s) 584, 1261, 1428, 1546
EarI CTCTTC 4 cut(s) 584, 1261, 1428, 1546
Eco105I TACGTA 1 cut(s) 267
Eco47I GGWCC 2 cut(s) 422, 548
Esp3I CGTCTC 1 cut(s) 1380
FaeI CATG 9 cut(s) 98, 326, 526, 671, 740, 866, 887, 1112, 1173
FalI AAGNNNNNCTT 4 cut(s) 134, 166, 988, 1020
FaqI GGGAC 2 cut(s) 105, 858
FatI CATG 9 cut(s) 94, 322, 522, 667, 736, 862, 883, 1108, 1169
FbaI TGATCA 2 cut(s) 445, 880
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 1068
FokI GGATG 4 cut(s) 133, 1046, 1289, 1462
Fsp4HI GCNGC 1 cut(s) 1068
FspBI CTAG 2 cut(s) 417, 627
GluI GCNGC 1 cut(s) 1068
HaeIII GGCC 1 cut(s) 327
HgaI GACGC 2 cut(s) 301, 1362
Hin1I GRCGYC 2 cut(s) 312, 1373
Hin1II CATG 9 cut(s) 98, 326, 526, 671, 740, 866, 887, 1112, 1173
HincII GTYRAC 2 cut(s) 166, 316
HindII GTYRAC 2 cut(s) 166, 316
HindIII AAGCTT 1 cut(s) 542
HinfI GANTC 6 cut(s) 71, 125, 190, 576, 874, 1413
HphI GGTGA 2 cut(s) 1319, 1374
Hpy166II GTNNAC 9 cut(s) 23, 166, 316, 350, 425, 805, 952, 954, 1245
Hpy188I TCNGA 2 cut(s) 47, 130
Hpy188III TCNNGA 5 cut(s) 449, 536, 878, 980, 1109
Hpy8I GTNNAC 9 cut(s) 23, 166, 316, 350, 425, 805, 952, 954, 1245
HpyAV CCTTC 3 cut(s) 82, 1021, 1154
HpyCH4III ACNGT 2 cut(s) 10, 503
HpyCH4IV ACGT 1 cut(s) 266
HpyF3I CTNAG 5 cut(s) 121, 372, 603, 848, 1234
HpySE526I ACGT 1 cut(s) 266
Hsp92I GRCGYC 2 cut(s) 312, 1373
Hsp92II CATG 9 cut(s) 98, 326, 526, 671, 740, 866, 887, 1112, 1173
Ksp22I TGATCA 2 cut(s) 445, 880
Kzo9I GATC 6 cut(s) 208, 291, 445, 451, 708, 880
LmnI GCTCC 1 cut(s) 304
Lsp1109I GCAGC 1 cut(s) 1054
LweI GCATC 1 cut(s) 88
MaeI CTAG 2 cut(s) 417, 627
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 2 cut(s) 387, 770
MalI GATC 6 cut(s) 210, 293, 447, 453, 710, 882
MboI GATC 6 cut(s) 208, 291, 445, 451, 708, 880
MfeI CAATTG 2 cut(s) 333, 459
MflI RGATCY 2 cut(s) 451, 708
MlsI TGGCCA 1 cut(s) 327
MluNI TGGCCA 1 cut(s) 327
MlyI GAGTC 3 cut(s) 134, 570, 1407
MmeI TCCRAC 2 cut(s) 611, 1243
Mox20I TGGCCA 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 873
MscI TGGCCA 1 cut(s) 327
MseI TTAA 6 cut(s) 240, 356, 528, 837, 1061, 1437
Msp20I TGGCCA 1 cut(s) 327
MunI CAATTG 2 cut(s) 333, 459
Mva1269I GAATGC 1 cut(s) 643
NdeII GATC 6 cut(s) 208, 291, 445, 451, 708, 880
NlaIII CATG 9 cut(s) 98, 326, 526, 671, 740, 866, 887, 1112, 1173
NlaIV GGNNCC 1 cut(s) 710
NspI RCATGY 1 cut(s) 1173
NspV TTCGAA 1 cut(s) 1195
PagI TCATGA 1 cut(s) 1108
PaqCI CACCTGC 1 cut(s) 5
PctI GAATGC 1 cut(s) 643
PdmI GAANNNNTTC 1 cut(s) 873
PfeI GAWTC 3 cut(s) 71, 190, 874
PkrI GCNGC 1 cut(s) 1069
PleI GAGTC 3 cut(s) 133, 570, 1407
PpsI GAGTC 3 cut(s) 133, 570, 1407
Ppu21I YACGTR 1 cut(s) 267
PsiI TTATAA 1 cut(s) 437
PspN4I GGNNCC 1 cut(s) 710
PspPI GGNCC 2 cut(s) 422, 548
PstI CTGCAG 1 cut(s) 1072
PsuI RGATCY 2 cut(s) 451, 708
RsaI GTAC 4 cut(s) 119, 269, 953, 1212
RsaNI GTAC 4 cut(s) 118, 268, 952, 1211
SaqAI TTAA 6 cut(s) 240, 356, 528, 837, 1061, 1437
SatI GCNGC 1 cut(s) 1068
Sau3AI GATC 6 cut(s) 208, 291, 445, 451, 708, 880
Sau96I GGNCC 2 cut(s) 422, 548
ScaI AGTACT 1 cut(s) 119
SchI GAGTC 3 cut(s) 134, 570, 1407
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 1 cut(s) 1068
SfuI TTCGAA 1 cut(s) 1195
SinI GGWCC 2 cut(s) 422, 548
SmlI CTYRAG 3 cut(s) 113, 477, 1450
SmoI CTYRAG 3 cut(s) 113, 477, 1450
SnaBI TACGTA 1 cut(s) 267
SspI AATATT 2 cut(s) 966, 1400
SspMI CTAG 2 cut(s) 417, 627
TaaI ACNGT 2 cut(s) 10, 503
TaiI ACGT 1 cut(s) 269
TaqI TCGA 3 cut(s) 535, 1195, 1290
TaqII GACCGA 1 cut(s) 183
TatI WGTACW 2 cut(s) 117, 951
TfiI GAWTC 3 cut(s) 71, 190, 874
Tru1I TTAA 6 cut(s) 240, 356, 528, 837, 1061, 1437
Tru9I TTAA 6 cut(s) 240, 356, 528, 837, 1061, 1437
TscAI CASTG 3 cut(s) 595, 807, 1006
TseI GCWGC 1 cut(s) 1067
TspDTI ATGAA 9 cut(s) 189, 705, 879, 912, 1050, 1056, 1092, 1097, 1217
TspRI CASTG 3 cut(s) 595, 807, 1006
VpaK11BI GGWCC 2 cut(s) 422, 548
XapI RAATTY 3 cut(s) 530, 617, 900
XceI RCATGY 1 cut(s) 1173
XmiI GTMKAC 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 873
XspI CTAG 2 cut(s) 417, 627
ZrmI AGTACT 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.