Rroxscaffold_7G00172920

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000164
Physical Location & Seq
Forward (+)
13032723 .. 13034990
2268 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172920.1

Sequence Viewer

Length: 1362 bp
ATGCGGTGCGAGATGAGAGAGAAGAAGTCAAGGGCCATGACGTTGACATTTTATATGAGCACTTCAAAGCTGAGCAAGAGAAGGATCCAGATTTCTTTTTTGAATTTTATACGGATGAAGAAAACGGGTTGGTCGGATGTTGATTCAATTGGAAAAAAATCATATATATATTTTGGTGATGTGGTTGTTTTTGATACAACATACAACACCAATCGTTATAAGATGATTTTTGCTCCAATAGTAGGTGTGAACCACCATGGGCAAACCATTGTTTTTGGATGTGCCTTTTTGAGCGATGAGACATTTGATTCGTTTGTTTGGTTGTTGACTACATGGCTTGCAGCAATGCCCAAAAGTGCCCCGAATGTTATTATCACCGATCAAGATCAAGCAATGAGTAAGGCAATTGCTCATGTTTTGCCAAACACATTTCACAGGTATTGTGTGTGGCATATTTTGAAGAAATTTCCAGAGAAGACTAATGTAGCTTTTATGCAAGAGTATTATCAACTTTTCAAGACATGTATATGGGATTACGAGTGTCCAGAAGAATTTGAAAAGAGATGGTTTGAAGCATTGGAAAAAAGTCAACGGACAAATAATGAATGGTTAGAAAAGATGTATGAATTGCGTGGTAGGTGGATTCCAAAGCATACGTTAATAAAAACTTTTCAGCGGGGATGTCAAGCGAGTCAAAGAGTAGAATCTGCACATGCTTTCTTCAAGCGTTATTGTGATAAAGAAAACACCTTGATGGATTTTGTCACTCGTTTCAATAGGGCGGTTGCTCATCGGAGACATGAAGAATTGGTTGAAGACCATAGAGATTTGAATGAGACACCTAACTTGAAATTAGGGATGCCAATGGAGGTCCAAATGGCTCAATTGTATACCAAAAAGTATTTTCAGTACTTTCAAGCTCAGCTTCATAATGGTAATGATTATATCATAAATGCCGTAATGGAAGATGGCGGTCATTGTGTTTACAAGACTGAAAGGGTGTTTGCTCAAAACCTTAGGATGCGGACGCTTGTATATGATAAGATATCAAAAATAGTGACATGCAGTTGTAAAATGTTTGAGTTTGAAGGTATTCCTTGCAGGCATATTTTGGCTCTATTACGACTAAAGCAGATCATGGAATTGCCAAAGGAATATATTCTGCGAAGATGGACAAGGTTTTCAAGAATTCGTAGAGATAGCTGCCAATGGCAAGATGGTACAGATAATTCATTAATAATGAGACACAATGGTATGTTCAAAATTGCATCCGGTTTAATTGATGAGGCGGCAATTTCACTAGAGGGACTGAACTTGTGCAAAAGGCATTTGAAGGACTTATGGAACAAATTAAGAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

453

Amino Acids

53.97

Weight (kDa)

9.32

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 55 - 143 8.5e-06 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 61 - 155 6.3e-32 MULE transposase domain
SWIM PF04434 354 - 375 1.8e-09 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
AccI GTMKAC 1 cut(s) 890
AciI CCGC 6 cut(s) 4, 676, 782, 972, 1024, 1289
AclWI GGATC 2 cut(s) 79, 92
AcsI RAATTY 4 cut(s) 103, 464, 551, 1188
AfaI GTAC 2 cut(s) 911, 1222
AfiI CCNNNNNNNGG 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 521
AluBI AGCT 5 cut(s) 70, 488, 920, 925, 1203
AluI AGCT 5 cut(s) 70, 488, 920, 925, 1203
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 4 cut(s) 293, 790, 830, 1237
AlwI GGATC 2 cut(s) 79, 92
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 341, 1203
ApoI RAATTY 4 cut(s) 103, 464, 551, 1188
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
AseI ATTAAT 1 cut(s) 1235
Asp700I GAANNNNTTC 2 cut(s) 1092, 1158
AspS9I GGNCC 2 cut(s) 33, 871
AsuHPI GGTGA 2 cut(s) 188, 367
AvaII GGWCC 1 cut(s) 871
AxyI CCTNAGG 1 cut(s) 1016
BaeGI GKGCMC 1 cut(s) 361
BamHI GGATCC 1 cut(s) 84
BbsI GAAGAC 2 cut(s) 482, 822
Bbv12I GWGCWC 1 cut(s) 62
BbvI GCAGC 2 cut(s) 353, 1190
BccI CCATC 5 cut(s) 558, 748, 962, 1164, 1211
BceAI ACGGC 1 cut(s) 941
BcoDI GTCTC 4 cut(s) 293, 790, 830, 1237
BfaI CTAG 1 cut(s) 1301
BisI GCNGC 3 cut(s) 342, 1204, 1290
BlpI GCTNAGC 2 cut(s) 71, 921
BlsI GCNGC 3 cut(s) 343, 1205, 1291
BmcAI AGTACT 1 cut(s) 911
Bme18I GGWCC 1 cut(s) 871
BmgT120I GGNCC 2 cut(s) 33, 871
BmiI GGNNCC 1 cut(s) 86
BmsI GCATC 3 cut(s) 849, 1011, 1277
BpiI GAAGAC 2 cut(s) 482, 822
Bpu1102I GCTNAGC 2 cut(s) 71, 921
BsaBI GATNNNNATC 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 256
BsaWI WCCGGW 1 cut(s) 1271
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse21I CCTNAGG 1 cut(s) 1016
Bse3DI GCAATG 2 cut(s) 351, 399
Bse8I GATNNNNATC 1 cut(s) 384
BseDI CCNNGG 1 cut(s) 256
BseGI GGATG 7 cut(s) 120, 142, 284, 686, 864, 1026, 1268
BseJI GATNNNNATC 1 cut(s) 384
BseLI CCNNNNNNNGG 1 cut(s) 242
BseMI GCAATG 2 cut(s) 351, 399
BseMII CTCAG 2 cut(s) 62, 935
BseSI GKGCMC 1 cut(s) 361
BseXI GCAGC 2 cut(s) 353, 1190
BsgI GTGCAG 1 cut(s) 693
BshFI GGCC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 62
BsiSI CCGG 1 cut(s) 1272
BslFI GGGAC 1 cut(s) 1320
BslI CCNNNNNNNGG 1 cut(s) 242
BsmAI GTCTC 4 cut(s) 293, 790, 830, 1237
BsmFI GGGAC 1 cut(s) 1320
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 62, 361
Bsp143I GATC 4 cut(s) 84, 379, 385, 1134
Bsp1720I GCTNAGC 2 cut(s) 71, 921
Bsp19I CCATGG 1 cut(s) 256
BspACI CCGC 6 cut(s) 4, 676, 782, 972, 1024, 1289
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 2 cut(s) 63, 934
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 2 cut(s) 79, 92
BsrDI GCAATG 2 cut(s) 351, 399
BssECI CCNNGG 1 cut(s) 256
BssMI GATC 4 cut(s) 84, 379, 385, 1134
BssNAI GTATAC 1 cut(s) 891
BssT1I CCWWGG 1 cut(s) 256
Bst1107I GTATAC 1 cut(s) 891
BstC8I GCNNGC 2 cut(s) 339, 1103
BstDEI CTNAG 3 cut(s) 71, 921, 1016
BstDSI CCRYGG 1 cut(s) 256
BstF5I GGATG 7 cut(s) 120, 142, 284, 686, 864, 1026, 1268
BstKTI GATC 4 cut(s) 87, 382, 388, 1137
BstMAI GTCTC 4 cut(s) 293, 790, 830, 1237
BstMBI GATC 4 cut(s) 84, 379, 385, 1134
BstNSI RCATGY 3 cut(s) 525, 716, 1065
BstSLI GKGCMC 1 cut(s) 361
BstV1I GCAGC 2 cut(s) 353, 1190
BstV2I GAAGAC 2 cut(s) 482, 822
BstX2I RGATCY 1 cut(s) 84
BstYI RGATCY 1 cut(s) 84
BstZ17I GTATAC 1 cut(s) 891
Bsu36I CCTNAGG 1 cut(s) 1016
BsuRI GGCC 1 cut(s) 35
BtgI CCRYGG 1 cut(s) 256
BtgZI GCGATG 1 cut(s) 309
BtsCI GGATG 7 cut(s) 120, 142, 284, 686, 864, 1026, 1268
Cac8I GCNNGC 2 cut(s) 339, 1103
Cfr13I GGNCC 2 cut(s) 33, 871
CseI GACGC 1 cut(s) 1036
Csp6I GTAC 2 cut(s) 910, 1221
CviAII CATG 9 cut(s) 37, 257, 333, 413, 522, 713, 800, 1062, 1138
CviJI RGCY 9 cut(s) 35, 70, 337, 488, 881, 920, 925, 1115, 1203
CviKI_1 RGCY 9 cut(s) 35, 70, 337, 488, 881, 920, 925, 1115, 1203
CviQI GTAC 2 cut(s) 910, 1221
DdeI CTNAG 3 cut(s) 71, 921, 1016
DpnI GATC 4 cut(s) 86, 381, 387, 1136
DpnII GATC 4 cut(s) 84, 379, 385, 1134
Eco130I CCWWGG 1 cut(s) 256
Eco32I GATATC 1 cut(s) 1047
Eco47I GGWCC 1 cut(s) 871
Eco81I CCTNAGG 1 cut(s) 1016
EcoRI GAATTC 1 cut(s) 1188
EcoRV GATATC 1 cut(s) 1047
EcoT14I CCWWGG 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 256
FaeI CATG 9 cut(s) 40, 260, 336, 416, 525, 716, 803, 1065, 1141
FalI AAGNNNNNCTT 2 cut(s) 909, 941
FaqI GGGAC 1 cut(s) 1320
FatI CATG 9 cut(s) 36, 256, 332, 412, 521, 712, 799, 1061, 1137
FauI CCCGC 1 cut(s) 669
FblI GTMKAC 1 cut(s) 890
Fnu4HI GCNGC 3 cut(s) 342, 1204, 1290
FokI GGATG 7 cut(s) 127, 149, 291, 693, 871, 1033, 1255
Fsp4HI GCNGC 3 cut(s) 342, 1204, 1290
FspBI CTAG 1 cut(s) 1301
GluI GCNGC 3 cut(s) 342, 1204, 1290
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 1272
HgaI GACGC 1 cut(s) 1036
Hin1II CATG 9 cut(s) 40, 260, 336, 416, 525, 716, 803, 1065, 1141
HincII GTYRAC 3 cut(s) 45, 327, 590
HindII GTYRAC 3 cut(s) 45, 327, 590
HinfI GANTC 5 cut(s) 143, 308, 643, 691, 704
HpaII CCGG 1 cut(s) 1272
HphI GGTGA 2 cut(s) 188, 367
Hpy166II GTNNAC 6 cut(s) 45, 250, 327, 590, 891, 985
Hpy188I TCNGA 2 cut(s) 136, 795
Hpy188III TCNNGA 6 cut(s) 88, 383, 470, 517, 545, 1185
Hpy8I GTNNAC 6 cut(s) 45, 250, 327, 590, 891, 985
HpyAV CCTTC 3 cut(s) 75, 1082, 1327
HpyCH4IV ACGT 2 cut(s) 41, 656
HpyCH4V TGCA 7 cut(s) 341, 496, 710, 1065, 1101, 1268, 1320
HpyF3I CTNAG 3 cut(s) 71, 921, 1016
HpySE526I ACGT 2 cut(s) 41, 656
Hsp92II CATG 9 cut(s) 40, 260, 336, 416, 525, 716, 803, 1065, 1141
Kzo9I GATC 4 cut(s) 84, 379, 385, 1134
LmnI GCTCC 1 cut(s) 238
LpnPI CCDG 6 cut(s) 101, 421, 483, 558, 1087, 1285
Lsp1109I GCAGC 2 cut(s) 353, 1190
LweI GCATC 3 cut(s) 849, 1011, 1277
MaeI CTAG 1 cut(s) 1301
MaeII ACGT 2 cut(s) 41, 656
MaeIII GTNAC 2 cut(s) 763, 1057
MalI GATC 4 cut(s) 86, 381, 387, 1136
MboI GATC 4 cut(s) 84, 379, 385, 1134
MfeI CAATTG 3 cut(s) 147, 405, 884
MflI RGATCY 1 cut(s) 84
MhlI GDGCHC 2 cut(s) 62, 361
MlyI GAGTC 1 cut(s) 700
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 3 cut(s) 862, 1279, 1297
MroXI GAANNNNTTC 2 cut(s) 1092, 1158
MseI TTAA 4 cut(s) 659, 1235, 1277, 1352
MslI CAYNNNNRTG 2 cut(s) 526, 752
MspA1I CMGCKG 1 cut(s) 676
MspI CCGG 1 cut(s) 1272
MunI CAATTG 3 cut(s) 147, 405, 884
NcoI CCATGG 1 cut(s) 256
NdeII GATC 4 cut(s) 84, 379, 385, 1134
NlaIII CATG 9 cut(s) 40, 260, 336, 416, 525, 716, 803, 1065, 1141
NlaIV GGNNCC 1 cut(s) 86
NmuCI GTSAC 2 cut(s) 763, 1057
NspI RCATGY 3 cut(s) 525, 716, 1065
PciI ACATGT 1 cut(s) 521
PdmI GAANNNNTTC 2 cut(s) 1092, 1158
PfeI GAWTC 4 cut(s) 143, 308, 643, 704
PkrI GCNGC 3 cut(s) 343, 1205, 1291
PleI GAGTC 1 cut(s) 699
PpsI GAGTC 1 cut(s) 699
PscI ACATGT 1 cut(s) 521
PshBI ATTAAT 1 cut(s) 1235
PsiI TTATAA 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 2 cut(s) 33, 871
PsuI RGATCY 1 cut(s) 84
RsaI GTAC 2 cut(s) 911, 1222
RsaNI GTAC 2 cut(s) 910, 1221
RseI CAYNNNNRTG 2 cut(s) 526, 752
SaqAI TTAA 4 cut(s) 659, 1235, 1277, 1352
SatI GCNGC 3 cut(s) 342, 1204, 1290
Sau3AI GATC 4 cut(s) 84, 379, 385, 1134
Sau96I GGNCC 2 cut(s) 33, 871
ScaI AGTACT 1 cut(s) 911
SchI GAGTC 1 cut(s) 700
SduI GDGCHC 2 cut(s) 62, 361
SfaNI GCATC 3 cut(s) 849, 1011, 1277
SinI GGWCC 1 cut(s) 871
SmiMI CAYNNNNRTG 2 cut(s) 526, 752
SsiI CCGC 6 cut(s) 4, 676, 782, 972, 1024, 1289
SspMI CTAG 1 cut(s) 1301
StyI CCWWGG 1 cut(s) 256
TaiI ACGT 2 cut(s) 44, 659
TatI WGTACW 1 cut(s) 909
TauI GCSGC 1 cut(s) 1292
TfiI GAWTC 4 cut(s) 143, 308, 643, 704
Tru1I TTAA 4 cut(s) 659, 1235, 1277, 1352
Tru9I TTAA 4 cut(s) 659, 1235, 1277, 1352
TseFI GTSAC 2 cut(s) 763, 1057
TseI GCWGC 2 cut(s) 341, 1203
Tsp45I GTSAC 2 cut(s) 763, 1057
TspDTI ATGAA 6 cut(s) 131, 618, 639, 816, 917, 1221
TspGWI ACGGA 2 cut(s) 127, 607
VpaK11BI GGWCC 1 cut(s) 871
VspI ATTAAT 1 cut(s) 1235
XapI RAATTY 4 cut(s) 103, 464, 551, 1188
XceI RCATGY 3 cut(s) 525, 716, 1065
XcmI CCANNNNNNNNNTGG 1 cut(s) 1214
XmiI GTMKAC 1 cut(s) 890
XmnI GAANNNNTTC 2 cut(s) 1092, 1158
XspI CTAG 1 cut(s) 1301
ZrmI AGTACT 1 cut(s) 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.