Rw6G011330

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000164
Physical Location & Seq
Reverse (-)
19974583 .. 19975845
1263 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G011330.1

Sequence Viewer

Length: 849 bp
ATGACAAGAGAATTTGATAAGAAGTGGAAGGAAGTTGTTGAGAGGAGTAGCTTAAGTGAAAATGGATGGCTTCAATCAATTTATGACATTCGAGCATCATGGGTGCCTGCATATTGTAATCACATTTTCTCGGCTGGAATGTCAAGTAGCCAACATGCTGAAAGTTGTCATTCATTTTTCAATAAGTTTCAACTTATGAGAGAGGGTAACAATCAAAGAGTGTATTTGGTCAAGAAAAGAAGTGATCAGATTCAAAAGGATCGAGAAATTGTTTATGACAAGCATATGGATCTTGCTTCATGTACTTGCAAAAAATTTCAAAGTGAAGGAATCCCTTGTAGGCACATCTTGGCATATTTGCTGAAAGTTCAGGAAGACCTAGATGGGTTGGTGATAACAGATACAAATGCATTGGTGGTGAAGTGTAGTAAATTATTTCATCATGCTTCACTTGTTATTGACAAAGTCCTTACAAGTCCTGATGAAGCTCAGACCATGTTTCTTGAGACACTTGACAATGTGCTTGATAAGCTCAAACAAATGCAAGTCAATAGTAGTGAAAGTGTGAGTATCGGTAAGAAGTTGCCGAGTGATGTTCAACATAGGTATAATGAGCCAAATGAAATCAAAGCGAAGGGTTCTAGAAAAAGGCTTAAGAAAACAAAGAGAAAGAGAAGTAGTACAAGGAAATGTCATGGATGTGTTTGTATGGCCAATTACATGATAAACGAAATTGCCCAGCGCTTAGTACGGCTAAAGATAGGTTCCTTTGCGAAAGATGATGACGAGCCAATATCAAATGATGAAGATGAGGACTCCAGTTCCTTCGATGAAGATGATGACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

282

Amino Acids

32.48

Weight (kDa)

7.57

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 97 - 122 1.3e-08 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 103
AclWI GGATC 2 cut(s) 267, 297
AcoI YGGCCR 1 cut(s) 711
AcsI RAATTY 2 cut(s) 11, 314
AfaI GTAC 3 cut(s) 304, 682, 750
AfeI AGCGCT 1 cut(s) 743
AflII CTTAAG 2 cut(s) 52, 653
AgsI TTSAA 6 cut(s) 74, 181, 191, 254, 320, 599
AluBI AGCT 3 cut(s) 51, 488, 532
AluI AGCT 3 cut(s) 51, 488, 532
Alw26I GTCTC 1 cut(s) 500
AlwI GGATC 2 cut(s) 267, 297
Aor51HI AGCGCT 1 cut(s) 743
AoxI GGCC 1 cut(s) 711
ApoI RAATTY 2 cut(s) 11, 314
AspLEI GCGC 1 cut(s) 744
AsuHPI GGTGA 2 cut(s) 403, 430
BalI TGGCCA 1 cut(s) 713
BanI GGYRCC 1 cut(s) 103
BbsI GAAGAC 1 cut(s) 381
BccI CCATC 2 cut(s) 60, 377
BceAI ACGGC 1 cut(s) 767
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 500
BfaI CTAG 2 cut(s) 380, 642
BfoI RGCGCY 1 cut(s) 745
BfrI CTTAAG 2 cut(s) 52, 653
BmiI GGNNCC 2 cut(s) 105, 766
BmsI GCATC 1 cut(s) 104
BpiI GAAGAC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 802
BpuEI CTTGAG 1 cut(s) 524
Bse1I ACTGG 1 cut(s) 819
BseGI GGATG 2 cut(s) 71, 704
BseMII CTCAG 1 cut(s) 503
BseNI ACTGG 1 cut(s) 819
BseRI GAGGAG 1 cut(s) 58
BseYI CCCAGC 1 cut(s) 738
BshFI GGCC 1 cut(s) 713
BshNI GGYRCC 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 500
BsnI GGCC 1 cut(s) 713
Bsp143I GATC 3 cut(s) 244, 259, 289
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 1 cut(s) 502
BspLI GGNNCC 2 cut(s) 105, 766
BspPI GGATC 2 cut(s) 267, 297
BspT107I GGYRCC 1 cut(s) 103
BspTI CTTAAG 2 cut(s) 52, 653
BsrI ACTGG 1 cut(s) 819
BssMI GATC 3 cut(s) 244, 259, 289
BstAFI CTTAAG 2 cut(s) 52, 653
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 489, 745
BstF5I GGATG 2 cut(s) 71, 704
BstH2I RGCGCY 1 cut(s) 745
BstHHI GCGC 1 cut(s) 744
BstKTI GATC 3 cut(s) 247, 262, 292
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 3 cut(s) 244, 259, 289
BstMWI GCNNNNNNNGC 1 cut(s) 529
BstNSI RCATGY 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 289
BstYI RGATCY 1 cut(s) 289
BsuRI GGCC 1 cut(s) 713
BtsCI GGATG 2 cut(s) 71, 704
Cac8I GCNNGC 1 cut(s) 108
CfoI GCGC 1 cut(s) 744
Csp6I GTAC 3 cut(s) 303, 681, 749
CviAII CATG 7 cut(s) 99, 155, 300, 443, 496, 695, 721
CviQI GTAC 3 cut(s) 303, 681, 749
DdeI CTNAG 2 cut(s) 489, 745
DpnI GATC 3 cut(s) 246, 261, 291
DpnII GATC 3 cut(s) 244, 259, 289
EaeI YGGCCR 1 cut(s) 711
Eco47III AGCGCT 1 cut(s) 743
EcoT22I ATGCAT 1 cut(s) 412
FaeI CATG 7 cut(s) 102, 158, 303, 446, 499, 698, 724
FatI CATG 7 cut(s) 98, 154, 299, 442, 495, 694, 720
FauNDI CATATG 1 cut(s) 285
FbaI TGATCA 1 cut(s) 244
FokI GGATG 2 cut(s) 78, 711
FspBI CTAG 2 cut(s) 380, 642
GlaI GCGC 1 cut(s) 743
GsaI CCCAGC 1 cut(s) 742
GsuI CTGGAG 1 cut(s) 802
HaeII RGCGCY 1 cut(s) 745
HaeIII GGCC 1 cut(s) 713
HhaI GCGC 1 cut(s) 744
Hin1II CATG 7 cut(s) 102, 158, 303, 446, 499, 698, 724
Hin6I GCGC 1 cut(s) 742
HinP1I GCGC 1 cut(s) 742
HinfI GANTC 3 cut(s) 250, 330, 815
HphI GGTGA 2 cut(s) 403, 430
Hpy188I TCNGA 2 cut(s) 249, 492
Hpy188III TCNNGA 6 cut(s) 232, 263, 371, 479, 503, 642
HpyAV CCTTC 4 cut(s) 22, 320, 628, 835
HpyCH4V TGCA 4 cut(s) 110, 309, 410, 544
HpyF10VI GCNNNNNNNGC 1 cut(s) 529
HpyF3I CTNAG 2 cut(s) 489, 745
Hsp92II CATG 7 cut(s) 102, 158, 303, 446, 499, 698, 724
HspAI GCGC 1 cut(s) 742
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 3 cut(s) 244, 259, 289
LpnPI CCDG 6 cut(s) 120, 120, 356, 492, 752, 832
LweI GCATC 1 cut(s) 104
MaeI CTAG 2 cut(s) 380, 642
MaeIII GTNAC 1 cut(s) 206
MalI GATC 3 cut(s) 246, 261, 291
MboI GATC 3 cut(s) 244, 259, 289
MboII GAAGA 3 cut(s) 386, 818, 845
MflI RGATCY 1 cut(s) 289
MlsI TGGCCA 1 cut(s) 713
MluCI AATT 8 cut(s) 11, 78, 267, 314, 431, 715, 732, 844
MluNI TGGCCA 1 cut(s) 713
MlyI GAGTC 1 cut(s) 809
MnlI CCTC 3 cut(s) 36, 196, 805
Mox20I TGGCCA 1 cut(s) 713
Mph1103I ATGCAT 1 cut(s) 412
MscI TGGCCA 1 cut(s) 713
MseI TTAA 3 cut(s) 53, 654, 847
MslI CAYNNNNRTG 1 cut(s) 699
Msp20I TGGCCA 1 cut(s) 713
MspCI CTTAAG 2 cut(s) 52, 653
MwoI GCNNNNNNNGC 1 cut(s) 529
NdeI CATATG 1 cut(s) 285
NdeII GATC 3 cut(s) 244, 259, 289
NlaIII CATG 7 cut(s) 102, 158, 303, 446, 499, 698, 724
NlaIV GGNNCC 2 cut(s) 105, 766
NmeAIII GCCGAG 2 cut(s) 110, 612
NsiI ATGCAT 1 cut(s) 412
NspI RCATGY 1 cut(s) 158
PfeI GAWTC 2 cut(s) 250, 330
PflFI GACNNNGTC 1 cut(s) 464
PleI GAGTC 1 cut(s) 809
PpsI GAGTC 1 cut(s) 809
PspFI CCCAGC 1 cut(s) 738
PspN4I GGNNCC 2 cut(s) 105, 766
PsuI RGATCY 1 cut(s) 289
PsyI GACNNNGTC 1 cut(s) 464
RsaI GTAC 3 cut(s) 304, 682, 750
RsaNI GTAC 3 cut(s) 303, 681, 749
RseI CAYNNNNRTG 1 cut(s) 699
SaqAI TTAA 3 cut(s) 53, 654, 847
Sau3AI GATC 3 cut(s) 244, 259, 289
SchI GAGTC 1 cut(s) 809
SetI ASST 6 cut(s) 53, 381, 490, 534, 608, 766
SfaNI GCATC 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 3 cut(s) 52, 503, 653
SmoI CTYRAG 3 cut(s) 52, 503, 653
Sse9I AATT 8 cut(s) 11, 78, 267, 314, 431, 715, 732, 844
SspMI CTAG 2 cut(s) 380, 642
TaqI TCGA 3 cut(s) 91, 262, 828
TasI AATT 8 cut(s) 11, 78, 267, 314, 431, 715, 732, 844
TatI WGTACW 2 cut(s) 302, 680
TfiI GAWTC 2 cut(s) 250, 330
Tru1I TTAA 3 cut(s) 53, 654, 847
Tru9I TTAA 3 cut(s) 53, 654, 847
TspDTI ATGAA 7 cut(s) 162, 288, 428, 498, 636, 819, 846
Tth111I GACNNNGTC 1 cut(s) 464
Vha464I CTTAAG 2 cut(s) 52, 653
XapI RAATTY 2 cut(s) 11, 314
XbaI TCTAGA 1 cut(s) 641
XceI RCATGY 1 cut(s) 158
XspI CTAG 2 cut(s) 380, 642
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.