Rmu_sc0003558.1_g000007

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003558.1
OG0000164
Physical Location & Seq
Reverse (-)
38313 .. 39307
995 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003558.1_g000007.1.cds

Sequence Viewer

Length: 915 bp
atggagtcgaaggatgatcatatttatattcctcaagtaaaggcagagctgatgcctatattgcaccaagagtttgaaacaatagatgatgttgctgctttctacaatagatatgcaaaagaagcagggtttagtatcagaagtcattctagtgcaaccaacaaagataataccgaacttatgaggaaggagtatgtctgttataagcaaggaacttccaaagttgaaggagaaaaacgtaagagaggattaccaaaagtgggttgtaaagcaagaattgcagctgtgagaaagaagaagtctaggagatatgcaatctctgtatttgtcgagggtcataaccacccattaacaagcccacctagagtacatttgttgagatctcaccgtcgtgtttcaaaagttaacacagttctatcacagcaactaagcttggtaaatgttcagaaacatacacagtttgaattctttggtgttcaggcaggtggcattgtgaatattggttgtacacagcgtgatctgtataattatggaagaacttgttgtgaagcgcaaaaggggcatgatggagatctattgtacatgcattttcaaaatgagaaagaaaaagatccttcttttgtctatacaatggagtcatatgaggaaaacagagtaacaatgtgcttttgggctgactcaatttcaagacgagcttacagcttttatggagatgtcacaatcatctttacttgtgcattcttaaatgatgagacagccgattcttttgtttggttattcaaggaacttctaaatgctatgccaggaaatgcaccagaaaatgcccccaaaatgattattactgacaaagatcctgctatgactaaagccattttagaagcactcccacaaacatttcatagatattgcagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

304

Amino Acids

34.91

Weight (kDa)

8.77

Isoelectric Point (pI)

45.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AarI CACCTGC 1 cut(s) 473
Acc36I ACCTGC 1 cut(s) 473
AclWI GGATC 2 cut(s) 605, 845
AcsI RAATTY 1 cut(s) 464
AdeI CACNNNGTG 1 cut(s) 515
AfaI GTAC 3 cut(s) 369, 508, 581
AfiI CCNNNNNNNGG 1 cut(s) 260
AgsI TTSAA 7 cut(s) 77, 227, 399, 464, 593, 687, 781
AjnI CCWGG 1 cut(s) 802
AleI CACNNNNGTG 1 cut(s) 390
AluBI AGCT 5 cut(s) 49, 284, 432, 695, 702
AluI AGCT 5 cut(s) 49, 284, 432, 695, 702
Alw26I GTCTC 1 cut(s) 746
AlwI GGATC 2 cut(s) 605, 845
ApeKI GCWGC 2 cut(s) 95, 281
ApoI RAATTY 1 cut(s) 464
Asp700I GAANNNNTTC 1 cut(s) 145
AspLEI GCGC 1 cut(s) 553
AsuHPI GGTGA 1 cut(s) 377
BbvI GCAGC 2 cut(s) 82, 293
BccI CCATC 1 cut(s) 560
BciT130I CCWGG 1 cut(s) 804
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 746
BfaI CTAG 3 cut(s) 150, 303, 363
BfuAI ACCTGC 1 cut(s) 473
BglII AGATCT 2 cut(s) 380, 571
BisI GCNGC 2 cut(s) 96, 282
BlsI GCNGC 2 cut(s) 97, 283
Bme1390I CCNGG 1 cut(s) 804
BmrFI CCNGG 1 cut(s) 804
BmsI GCATC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 18
BsaBI GATNNNNATC 1 cut(s) 570
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 1 cut(s) 804
BseGI GGATG 1 cut(s) 19
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 1 cut(s) 260
BseXI GCAGC 2 cut(s) 82, 293
BslI CCNNNNNNNGG 1 cut(s) 260
BsmAI GTCTC 1 cut(s) 746
BsmI GAATGC 1 cut(s) 737
Bsp1407I TGTACA 2 cut(s) 506, 579
Bsp143I GATC 6 cut(s) 16, 380, 517, 571, 610, 850
BspMI ACCTGC 1 cut(s) 473
BspPI GGATC 2 cut(s) 605, 845
BsrGI TGTACA 2 cut(s) 506, 579
BssMI GATC 6 cut(s) 16, 380, 517, 571, 610, 850
Bst2UI CCWGG 1 cut(s) 804
Bst4CI ACNGT 3 cut(s) 389, 412, 459
BstAPI GCANNNNNTGC 1 cut(s) 278
BstAUI TGTACA 2 cut(s) 506, 579
BstDEI CTNAG 1 cut(s) 428
BstF5I GGATG 1 cut(s) 19
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 6 cut(s) 19, 383, 520, 574, 613, 853
BstMAI GTCTC 1 cut(s) 746
BstMBI GATC 6 cut(s) 16, 380, 517, 571, 610, 850
BstMWI GCNNNNNNNGC 4 cut(s) 61, 122, 278, 559
BstNI CCWGG 1 cut(s) 804
BstNSI RCATGY 1 cut(s) 586
BstSCI CCNGG 1 cut(s) 802
BstV1I GCAGC 2 cut(s) 82, 293
BstX2I RGATCY 4 cut(s) 380, 571, 610, 850
BstYI RGATCY 4 cut(s) 380, 571, 610, 850
BtsCI GGATG 1 cut(s) 19
BveI ACCTGC 1 cut(s) 473
CfoI GCGC 1 cut(s) 553
Csp6I GTAC 3 cut(s) 368, 507, 580
CviAII CATG 2 cut(s) 563, 583
CviJI RGCY 9 cut(s) 49, 284, 357, 432, 674, 695, 702, 758, 869
CviKI_1 RGCY 9 cut(s) 49, 284, 357, 432, 674, 695, 702, 758, 869
CviQI GTAC 3 cut(s) 368, 507, 580
DdeI CTNAG 1 cut(s) 428
DpnI GATC 6 cut(s) 18, 382, 519, 573, 612, 852
DpnII GATC 6 cut(s) 16, 380, 517, 571, 610, 850
DraIII CACNNNGTG 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 464
EcoRII CCWGG 1 cut(s) 802
EcoT22I ATGCAT 1 cut(s) 588
FaeI CATG 2 cut(s) 566, 586
FalI AAGNNNNNCTT 2 cut(s) 679, 711
FatI CATG 2 cut(s) 562, 582
FauNDI CATATG 1 cut(s) 640
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 2 cut(s) 96, 282
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 2 cut(s) 96, 282
FspBI CTAG 3 cut(s) 150, 303, 363
GlaI GCGC 1 cut(s) 552
GluI GCNGC 2 cut(s) 96, 282
HhaI GCGC 1 cut(s) 553
Hin1II CATG 2 cut(s) 566, 586
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HindIII AAGCTT 1 cut(s) 430
HinfI GANTC 4 cut(s) 5, 635, 677, 761
HpaI GTTAAC 1 cut(s) 406
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 2 cut(s) 406, 509
Hpy188I TCNGA 2 cut(s) 140, 447
Hpy188III TCNNGA 1 cut(s) 687
Hpy8I GTNNAC 2 cut(s) 406, 509
Hpy99I CGWCG 1 cut(s) 393
HpyAV CCTTC 4 cut(s) 4, 181, 221, 624
HpyCH4III ACNGT 3 cut(s) 389, 412, 459
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 9 cut(s) 64, 116, 155, 281, 314, 586, 737, 812, 909
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 122, 278, 559
HpyF3I CTNAG 1 cut(s) 428
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 2 cut(s) 566, 586
HspAI GCGC 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 16
KspAI GTTAAC 1 cut(s) 406
Kzo9I GATC 6 cut(s) 16, 380, 517, 571, 610, 850
LpnPI CCDG 7 cut(s) 111, 464, 468, 789, 816, 828, 867
Lsp1109I GCAGC 2 cut(s) 82, 293
LweI GCATC 1 cut(s) 42
MaeI CTAG 3 cut(s) 150, 303, 363
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 2 cut(s) 655, 715
MalI GATC 6 cut(s) 18, 382, 519, 573, 612, 852
MboI GATC 6 cut(s) 16, 380, 517, 571, 610, 850
MboII GAAGA 2 cut(s) 307, 546
MflI RGATCY 4 cut(s) 380, 571, 610, 850
MluCI AATT 4 cut(s) 276, 464, 526, 681
MlyI GAGTC 3 cut(s) 14, 644, 671
MnlI CCTC 5 cut(s) 42, 177, 239, 325, 637
Mph1103I ATGCAT 1 cut(s) 588
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 3 cut(s) 350, 405, 743
MslI CAYNNNNRTG 2 cut(s) 150, 390
MspA1I CMGCKG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 804
Mva1269I GAATGC 1 cut(s) 737
MvaI CCWGG 1 cut(s) 804
MwoI GCNNNNNNNGC 4 cut(s) 61, 122, 278, 559
NdeI CATATG 1 cut(s) 640
NdeII GATC 6 cut(s) 16, 380, 517, 571, 610, 850
NlaIII CATG 2 cut(s) 566, 586
NmuCI GTSAC 1 cut(s) 715
NsiI ATGCAT 1 cut(s) 588
NspI RCATGY 1 cut(s) 586
OliI CACNNNNGTG 1 cut(s) 390
PaqCI CACCTGC 1 cut(s) 473
PctI GAATGC 1 cut(s) 737
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 1 cut(s) 761
PkrI GCNGC 2 cut(s) 97, 283
PleI GAGTC 3 cut(s) 13, 643, 671
PpsI GAGTC 3 cut(s) 13, 643, 671
PsiI TTATAA 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 802
PspGI CCWGG 1 cut(s) 802
PsuI RGATCY 4 cut(s) 380, 571, 610, 850
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 3 cut(s) 369, 508, 581
RsaNI GTAC 3 cut(s) 368, 507, 580
RseI CAYNNNNRTG 2 cut(s) 150, 390
SaqAI TTAA 3 cut(s) 350, 405, 743
SatI GCNGC 2 cut(s) 96, 282
Sau3AI GATC 6 cut(s) 16, 380, 517, 571, 610, 850
SchI GAGTC 3 cut(s) 14, 644, 671
ScrFI CCNGG 1 cut(s) 804
SetI ASST 8 cut(s) 51, 241, 286, 364, 434, 487, 697, 704
SfaNI GCATC 1 cut(s) 42
SmiMI CAYNNNNRTG 2 cut(s) 150, 390
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 4 cut(s) 276, 464, 526, 681
SspI AATATT 1 cut(s) 499
SspMI CTAG 3 cut(s) 150, 303, 363
StyD4I CCNGG 1 cut(s) 802
TaaI ACNGT 3 cut(s) 389, 412, 459
TaiI ACGT 1 cut(s) 241
TaqI TCGA 2 cut(s) 8, 330
TasI AATT 4 cut(s) 276, 464, 526, 681
TatI WGTACW 3 cut(s) 367, 506, 579
TfiI GAWTC 1 cut(s) 761
Tru1I TTAA 3 cut(s) 350, 405, 743
Tru9I TTAA 3 cut(s) 350, 405, 743
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 2 cut(s) 95, 281
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 1 cut(s) 887
XapI RAATTY 1 cut(s) 464
XceI RCATGY 1 cut(s) 586
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 3 cut(s) 150, 303, 363
Zsp2I ATGCAT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.