Rh6DG109400

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000164
Physical Location & Seq
Forward (+)
14387415 .. 14388258
844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG109400.1

Sequence Viewer

Length: 558 bp
ATGTTTGAATTTGAAGGTATTCCTTGCAGGCATATTTTGGCTCTATTACGACTAAAACAGATTATGGAATTGCCAAAGGAATATATTCTGCGAAGATGGACAAGGTTTTCAAGAATTCGTAGAGAAAGGTGCCAAGGGCAAGATAGTGCAGATAATTCATTAATAATGAGACACAACGGTATGTTCAAAATTGCATCCAATTTAATTGATGAGGCTGCAATTTCACCAGAGGGGACCGAACTTGTGCAAAAGGCATTTGAAGGACTTATGGAGCAAGTTAAGAAACTAAATCTTTCTGTTGGCCAAGCTTCTATCAACAATTATTCAGTAGGAACTTCTGAAGAGAATCGCTTCCTAGATCCTTCTCAAGTGAAGACTAAAGGTAGTGGAAAACGCATAACATCATGGAGAGACAGGAAAAGAAAAGTTAGACATTGTTCTAAATGTCAAAGTACTAAACATACTAAAAAGACATGCAGATTTGATAGGTCAGAGATTGTGGAAAATGATGTCGACAAAGCATTGGGTGAACAAGATTACTTGGTTGATGAACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

185

Amino Acids

21.48

Weight (kDa)

9.35

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 129
AccI GTMKAC 1 cut(s) 513
AclWI GGATC 1 cut(s) 353
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 2 cut(s) 8, 114
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 1 cut(s) 454
AgsI TTSAA 5 cut(s) 8, 14, 111, 187, 260
AluBI AGCT 1 cut(s) 308
AluI AGCT 1 cut(s) 308
Alw26I GTCTC 2 cut(s) 163, 405
AlwI GGATC 1 cut(s) 353
AoxI GGCC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 2 cut(s) 8, 114
AseI ATTAAT 1 cut(s) 161
Asp700I GAANNNNTTC 3 cut(s) 18, 84, 350
AspS9I GGNCC 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 216, 539
AvaII GGWCC 1 cut(s) 234
BalI TGGCCA 1 cut(s) 303
BanI GGYRCC 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 380
BbvI GCAGC 1 cut(s) 202
BccI CCATC 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 163, 405
BfaI CTAG 1 cut(s) 356
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
BmcAI AGTACT 1 cut(s) 454
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 131, 235
BmsI GCATC 1 cut(s) 203
BpiI GAAGAC 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 133
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 202
BsgI GTGCAG 1 cut(s) 168
BshFI GGCC 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 129
BslFI GGGAC 1 cut(s) 247
BsmAI GTCTC 2 cut(s) 163, 405
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 1 cut(s) 303
Bsp143I GATC 1 cut(s) 358
BspANI GGCC 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 131, 235
BspPI GGATC 1 cut(s) 353
BspT107I GGYRCC 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 29
BstF5I GGATG 1 cut(s) 194
BstKTI GATC 1 cut(s) 361
BstMAI GTCTC 2 cut(s) 163, 405
BstMBI GATC 1 cut(s) 358
BstNSI RCATGY 1 cut(s) 477
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 380
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 1 cut(s) 303
BtsCI GGATG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 234
Csp6I GTAC 1 cut(s) 453
CviAII CATG 2 cut(s) 405, 474
CviJI RGCY 4 cut(s) 41, 215, 303, 308
CviKI_1 RGCY 4 cut(s) 41, 215, 303, 308
CviQI GTAC 1 cut(s) 453
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
EaeI YGGCCR 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 234
Eco57I CTGAAG 1 cut(s) 360
EcoRI GAATTC 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 133
FaeI CATG 2 cut(s) 408, 477
FaqI GGGAC 1 cut(s) 247
FatI CATG 2 cut(s) 404, 473
FblI GTMKAC 1 cut(s) 513
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 356
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 1 cut(s) 303
Hin1II CATG 2 cut(s) 408, 477
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 1 cut(s) 306
HinfI GANTC 1 cut(s) 346
HphI GGTGA 2 cut(s) 216, 539
Hpy166II GTNNAC 2 cut(s) 514, 530
Hpy188I TCNGA 2 cut(s) 340, 493
Hpy188III TCNNGA 1 cut(s) 111
Hpy8I GTNNAC 2 cut(s) 514, 530
HpyAV CCTTC 3 cut(s) 8, 254, 372
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 6 cut(s) 27, 149, 194, 218, 247, 477
Hsp92II CATG 2 cut(s) 408, 477
Kzo9I GATC 1 cut(s) 358
LmnI GCTCC 1 cut(s) 271
LpnPI CCDG 3 cut(s) 13, 240, 400
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 203
MaeI CTAG 1 cut(s) 356
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MboII GAAGA 3 cut(s) 105, 353, 385
MflI RGATCY 1 cut(s) 358
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 9 cut(s) 8, 68, 114, 154, 189, 199, 204, 219, 319
MluNI TGGCCA 1 cut(s) 303
MnlI CCTC 2 cut(s) 205, 223
Mox20I TGGCCA 1 cut(s) 303
MroXI GAANNNNTTC 3 cut(s) 18, 84, 350
MscI TGGCCA 1 cut(s) 303
MseI TTAA 3 cut(s) 161, 203, 279
Msp20I TGGCCA 1 cut(s) 303
NdeII GATC 1 cut(s) 358
NlaIII CATG 2 cut(s) 408, 477
NlaIV GGNNCC 2 cut(s) 131, 235
NspI RCATGY 1 cut(s) 477
PdmI GAANNNNTTC 3 cut(s) 18, 84, 350
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 1 cut(s) 217
PshBI ATTAAT 1 cut(s) 161
PspN4I GGNNCC 2 cut(s) 131, 235
PspPI GGNCC 1 cut(s) 234
PsuI RGATCY 1 cut(s) 358
RsaI GTAC 1 cut(s) 454
RsaNI GTAC 1 cut(s) 453
SalI GTCGAC 1 cut(s) 512
SaqAI TTAA 3 cut(s) 161, 203, 279
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 358
Sau96I GGNCC 1 cut(s) 234
ScaI AGTACT 1 cut(s) 454
SetI ASST 6 cut(s) 19, 107, 131, 310, 385, 491
SfaNI GCATC 1 cut(s) 203
SinI GGWCC 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 366
SmoI CTYRAG 1 cut(s) 366
Sse9I AATT 9 cut(s) 8, 68, 114, 154, 189, 199, 204, 219, 319
SspMI CTAG 1 cut(s) 356
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 1 cut(s) 513
TaqII GACCGA 1 cut(s) 251
TasI AATT 9 cut(s) 8, 68, 114, 154, 189, 199, 204, 219, 319
TatI WGTACW 1 cut(s) 452
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 161, 203, 279
Tru9I TTAA 3 cut(s) 161, 203, 279
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 147
VpaK11BI GGWCC 1 cut(s) 234
VspI ATTAAT 1 cut(s) 161
XapI RAATTY 2 cut(s) 8, 114
XceI RCATGY 1 cut(s) 477
XmiI GTMKAC 1 cut(s) 513
XmnI GAANNNNTTC 3 cut(s) 18, 84, 350
XspI CTAG 1 cut(s) 356
ZrmI AGTACT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.