Rmu_sc0006326.1_g000035

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006326.1
OG0000164
Physical Location & Seq
Reverse (-)
105918 .. 107113
1196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006326.1_g000035.1.cds

Sequence Viewer

Length: 966 bp
atggagtcagaggatgatcaagtttatattcctcaagtaaaggtaaagttgatgcctaaattataccaagagtttaaaacaatagatgatgttgctgctttctacaatagatatgcaaaagaagcagggtttagtattagaagtcattctagtgcgaccatcaaagataagaaacaacttatgaagaaggagtatgtctgttataagcaaggagttcccaaagttgaaggagaaaagcgtaagagaggattaccaaaagtgggttgtaaagagagaattgcagttgtgagaaagaaggagtttggaagatatgcaatctctgtatttgttgaggctcacaaccatccattaacaagcccgcctagagcaggtggcattcaaaatattggttttatacagcgtgatctatataattatggaagaacttgtcgtgaagagaagaaggggcgtgatggagatctactgtacatgcattttgagaatgagaaagaaaaatattcttcttttgtctatacaatggatggagatgaggaaaacagagtaacatggtgcttttgggctgaaggcattcaaaatattggttttatacagcgtgatctatataattatggaagaacttgtcgtgaagagaagaaggggcgtgatggagatctactgtacatgcattttgagaatgagaaagaaaaatattcttcttttgtctatacaatggatggagatgaggaaaacagagtaacatggtgcttttgggctgaatcaatttcaagacgagcttatagcttttatggagatgtagttatctttgatactacatacaacacaaatcggtatggaatgatttttgcaccattcactggtgttaacaatcatgggcagacaatcatcttttcttgtgcattcttgaatgatgagacaaccgatacttttgtttggttattcaaggaatttctatatgctatgccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

321

Amino Acids

37.81

Weight (kDa)

7.55

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AarI CACCTGC 1 cut(s) 359
Acc36I ACCTGC 1 cut(s) 359
AccB7I CCANNNNNTGG 1 cut(s) 854
AciI CCGC 1 cut(s) 359
AcsI RAATTY 1 cut(s) 944
AcuI CTGAAG 1 cut(s) 582
AfaI GTAC 2 cut(s) 467, 659
AfiI CCNNNNNNNGG 3 cut(s) 260, 368, 854
AgsI TTSAA 6 cut(s) 227, 380, 572, 765, 904, 940
AluBI AGCT 2 cut(s) 773, 780
AluI AGCT 2 cut(s) 773, 780
Alw26I GTCTC 1 cut(s) 905
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 944
Asp700I GAANNNNTTC 2 cut(s) 145, 567
BaeI ACNNNNGTAYC 2 cut(s) 912, 945
BbvI GCAGC 1 cut(s) 82
BccI CCATC 6 cut(s) 167, 351, 446, 515, 638, 707
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 905
BfaI CTAG 2 cut(s) 150, 363
BfuAI ACCTGC 1 cut(s) 359
BglII AGATCT 2 cut(s) 457, 649
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BmsI GCATC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 18
BsaBI GATNNNNATC 2 cut(s) 456, 648
BsaXI ACNNNNNCTCC 2 cut(s) 780, 810
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 368, 854
Bse1I ACTGG 1 cut(s) 859
Bse8I GATNNNNATC 2 cut(s) 456, 648
BseGI GGATG 4 cut(s) 19, 343, 526, 718
BseJI GATNNNNATC 2 cut(s) 456, 648
BseLI CCNNNNNNNGG 3 cut(s) 260, 368, 854
BseNI ACTGG 1 cut(s) 859
BseXI GCAGC 1 cut(s) 82
BslI CCNNNNNNNGG 3 cut(s) 260, 368, 854
BsmAI GTCTC 1 cut(s) 905
BsmI GAATGC 3 cut(s) 375, 567, 896
Bsp1407I TGTACA 2 cut(s) 465, 657
Bsp143I GATC 5 cut(s) 16, 403, 457, 595, 649
BspACI CCGC 1 cut(s) 359
BspMI ACCTGC 1 cut(s) 359
BsrGI TGTACA 2 cut(s) 465, 657
BsrI ACTGG 1 cut(s) 859
BssMI GATC 5 cut(s) 16, 403, 457, 595, 649
Bst4CI ACNGT 2 cut(s) 465, 657
Bst6I CTCTTC 2 cut(s) 429, 621
BstAUI TGTACA 2 cut(s) 465, 657
BstC8I GCNNGC 1 cut(s) 359
BstENI CCTNNNNNAGG 1 cut(s) 366
BstF5I GGATG 4 cut(s) 19, 343, 526, 718
BstKTI GATC 5 cut(s) 19, 406, 460, 598, 652
BstMAI GTCTC 1 cut(s) 905
BstMBI GATC 5 cut(s) 16, 403, 457, 595, 649
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstNSI RCATGY 2 cut(s) 472, 664
BstV1I GCAGC 1 cut(s) 82
BstX2I RGATCY 2 cut(s) 457, 649
BstYI RGATCY 2 cut(s) 457, 649
BtsCI GGATG 4 cut(s) 19, 343, 526, 718
BtsIMutI CAGTG 1 cut(s) 852
BveI ACCTGC 1 cut(s) 359
Cac8I GCNNGC 1 cut(s) 359
Csp6I GTAC 2 cut(s) 466, 658
CviAII CATG 6 cut(s) 469, 546, 661, 738, 869, 963
CviJI RGCY 6 cut(s) 335, 357, 560, 752, 773, 780
CviKI_1 RGCY 6 cut(s) 335, 357, 560, 752, 773, 780
CviQI GTAC 2 cut(s) 466, 658
DpnI GATC 5 cut(s) 18, 405, 459, 597, 651
DpnII GATC 5 cut(s) 16, 403, 457, 595, 649
DraI TTTAAA 1 cut(s) 76
Eam1104I CTCTTC 2 cut(s) 429, 621
EarI CTCTTC 2 cut(s) 429, 621
Eco57I CTGAAG 1 cut(s) 582
EcoNI CCTNNNNNAGG 1 cut(s) 366
EcoT22I ATGCAT 2 cut(s) 474, 666
FaeI CATG 6 cut(s) 472, 549, 664, 741, 872, 966
FalI AAGNNNNNCTT 2 cut(s) 757, 789
FatI CATG 6 cut(s) 468, 545, 660, 737, 868, 962
FauI CCCGC 1 cut(s) 366
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 4 cut(s) 26, 330, 533, 725
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 2 cut(s) 150, 363
GluI GCNGC 1 cut(s) 96
Hin1II CATG 6 cut(s) 472, 549, 664, 741, 872, 966
HincII GTYRAC 1 cut(s) 862
HindII GTYRAC 1 cut(s) 862
HinfI GANTC 2 cut(s) 5, 755
HpaI GTTAAC 1 cut(s) 862
Hpy166II GTNNAC 1 cut(s) 862
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 4 cut(s) 431, 623, 765, 901
Hpy8I GTNNAC 1 cut(s) 862
HpyAV CCTTC 6 cut(s) 181, 221, 289, 436, 557, 628
HpyCH4III ACNGT 2 cut(s) 465, 657
HpyCH4V TGCA 7 cut(s) 116, 281, 314, 472, 664, 845, 896
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
Hsp92II CATG 6 cut(s) 472, 549, 664, 741, 872, 966
Ksp22I TGATCA 1 cut(s) 16
KspAI GTTAAC 1 cut(s) 862
Kzo9I GATC 5 cut(s) 16, 403, 457, 595, 649
LpnPI CCDG 3 cut(s) 111, 354, 840
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 1 cut(s) 42
MaeI CTAG 2 cut(s) 150, 363
MaeIII GTNAC 2 cut(s) 541, 733
MalI GATC 5 cut(s) 18, 405, 459, 597, 651
MboI GATC 5 cut(s) 16, 403, 457, 595, 649
MflI RGATCY 2 cut(s) 457, 649
MluCI AATT 6 cut(s) 59, 276, 412, 604, 759, 944
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 6 cut(s) 4, 42, 239, 325, 523, 715
Mph1103I ATGCAT 2 cut(s) 474, 666
MroXI GAANNNNTTC 2 cut(s) 145, 567
MseI TTAA 3 cut(s) 75, 350, 861
MslI CAYNNNNRTG 1 cut(s) 150
Mva1269I GAATGC 3 cut(s) 375, 567, 896
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeII GATC 5 cut(s) 16, 403, 457, 595, 649
NlaIII CATG 6 cut(s) 472, 549, 664, 741, 872, 966
NsiI ATGCAT 2 cut(s) 474, 666
NspI RCATGY 2 cut(s) 472, 664
PaqCI CACCTGC 1 cut(s) 359
PctI GAATGC 3 cut(s) 375, 567, 896
PdmI GAANNNNTTC 2 cut(s) 145, 567
PfeI GAWTC 1 cut(s) 755
PflMI CCANNNNNTGG 1 cut(s) 854
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PsiI TTATAA 1 cut(s) 204
PsuI RGATCY 2 cut(s) 457, 649
RsaI GTAC 2 cut(s) 467, 659
RsaNI GTAC 2 cut(s) 466, 658
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 3 cut(s) 75, 350, 861
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 5 cut(s) 16, 403, 457, 595, 649
SchI GAGTC 1 cut(s) 14
SetI ASST 4 cut(s) 45, 373, 775, 782
SfaNI GCATC 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
Sse9I AATT 6 cut(s) 59, 276, 412, 604, 759, 944
SsiI CCGC 1 cut(s) 359
SspI AATATT 4 cut(s) 385, 497, 577, 689
SspMI CTAG 2 cut(s) 150, 363
TaaI ACNGT 2 cut(s) 465, 657
TasI AATT 6 cut(s) 59, 276, 412, 604, 759, 944
TatI WGTACW 2 cut(s) 465, 657
TfiI GAWTC 1 cut(s) 755
Tru1I TTAA 3 cut(s) 75, 350, 861
Tru9I TTAA 3 cut(s) 75, 350, 861
TscAI CASTG 1 cut(s) 859
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 197
TspRI CASTG 1 cut(s) 859
Van91I CCANNNNNTGG 1 cut(s) 854
XagI CCTNNNNNAGG 1 cut(s) 366
XapI RAATTY 1 cut(s) 944
XceI RCATGY 2 cut(s) 472, 664
XmnI GAANNNNTTC 2 cut(s) 145, 567
XspI CTAG 2 cut(s) 150, 363
Zsp2I ATGCAT 2 cut(s) 474, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.