Rmu_sc0008600.1_g000023

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008600.1
Physical Location & Seq
Forward (+)
65735 .. 66400
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008600.1_g000023.1.cds

Sequence Viewer

Length: 666 bp
atgtcccttgacatagaagatcatatggctaaggtttatacacgaaagctattttatgaagttcaagaacaattgaaagagagcttcaaatataaactagaacttctaagagaaaatgtcactcattgcgtgtttaaggttatgcgaaagaacattgatacttgtaaatctcgtgaactgacttacaaaaaagtttctgattttgcatcatgcagctgtagaaagtttgagagtaaagggcttccatgtctgcctgttttgtcatatttgattaaaatacaagatgttgataaattgcctattcagtacatcttgaaaagatggactaaaactgcaaaacagagtcttgtgttagattctgatggaatagaggtaaaagataacaaagctttacttgcaaggaggactaaactattccagcatgctacagatgcaattgataaggcaatggtgagtgatgaggctagtcagctctttatggaatgcttggatgctttcttggagaatcttaaaacattgattggtaatgaaagtggacaaagtgcaatagttttggagaccaagattgattctattcagcatatttttaatgaaccaaatcaagtgagggccaaagggtgtgggagaaggttgaaaaaacgaaaagctagagaagaggaaagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

221

Amino Acids

25.59

Weight (kDa)

9.05

Isoelectric Point (pI)

49.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 308
AgsI TTSAA 5 cut(s) 65, 76, 88, 316, 634
AluBI AGCT 6 cut(s) 49, 84, 216, 389, 472, 647
AluI AGCT 6 cut(s) 49, 84, 216, 389, 472, 647
Alw26I GTCTC 1 cut(s) 551
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 609
AsuHPI GGTGA 1 cut(s) 463
BauI CACGAG 1 cut(s) 171
BbvI GCAGC 1 cut(s) 225
BccI CCATC 2 cut(s) 315, 356
BcoDI GTCTC 1 cut(s) 551
BfaI CTAG 3 cut(s) 98, 465, 648
BfmI CTRYAG 2 cut(s) 217, 426
BisI GCNGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 609
BmsI GCATC 3 cut(s) 215, 421, 481
Bpu10I CCTNAGC 1 cut(s) 30
BsaI GGTCTC 1 cut(s) 551
Bse3DI GCAATG 2 cut(s) 124, 453
BseGI GGATG 1 cut(s) 496
BseMI GCAATG 2 cut(s) 124, 453
BseXI GCAGC 1 cut(s) 225
BshFI GGCC 1 cut(s) 611
BsmAI GTCTC 1 cut(s) 551
BsmI GAATGC 1 cut(s) 488
BsnI GGCC 1 cut(s) 611
Bso31I GGTCTC 1 cut(s) 551
Bsp143I GATC 1 cut(s) 19
BspANI GGCC 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 551
BsrDI GCAATG 2 cut(s) 124, 453
BssMI GATC 1 cut(s) 19
BssSI CACGAG 1 cut(s) 171
Bst2BI CACGAG 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 648
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 2 cut(s) 30, 107
BstF5I GGATG 1 cut(s) 496
BstKTI GATC 1 cut(s) 22
BstMAI GTCTC 1 cut(s) 551
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 395, 431
BstNSI RCATGY 1 cut(s) 425
BstSFI CTRYAG 2 cut(s) 217, 426
BstV1I GCAGC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 611
BtsCI GGATG 1 cut(s) 496
Cac8I GCNNGC 1 cut(s) 423
Cfr13I GGNCC 1 cut(s) 609
Csp6I GTAC 1 cut(s) 307
CspCI CAANNNNNGTGG 2 cut(s) 601, 636
CviAII CATG 3 cut(s) 210, 246, 422
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 2 cut(s) 30, 107
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 648
Eco31I GGTCTC 1 cut(s) 551
FaeI CATG 3 cut(s) 213, 249, 425
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FatI CATG 3 cut(s) 209, 245, 421
FauNDI CATATG 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 214
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 1 cut(s) 214
FspBI CTAG 3 cut(s) 98, 465, 648
GluI GCNGC 1 cut(s) 214
HaeIII GGCC 1 cut(s) 611
Hin1II CATG 3 cut(s) 213, 249, 425
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 4 cut(s) 343, 356, 505, 569
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 2 cut(s) 176, 536
Hpy188I TCNGA 2 cut(s) 199, 361
Hpy188III TCNNGA 3 cut(s) 65, 173, 313
Hpy8I GTNNAC 2 cut(s) 176, 536
HpyAV CCTTC 1 cut(s) 621
HpyCH4V TGCA 6 cut(s) 206, 213, 335, 398, 434, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 431
HpyF3I CTNAG 2 cut(s) 30, 107
Hsp92II CATG 3 cut(s) 213, 249, 425
Kzo9I GATC 1 cut(s) 19
LpnPI CCDG 2 cut(s) 267, 431
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 3 cut(s) 215, 421, 481
MaeI CTAG 3 cut(s) 98, 465, 648
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 2 cut(s) 29, 665
MfeI CAATTG 2 cut(s) 71, 435
MluCI AATT 3 cut(s) 71, 293, 435
MlyI GAGTC 1 cut(s) 352
MnlI CCTC 5 cut(s) 364, 396, 454, 600, 649
MseI TTAA 5 cut(s) 135, 273, 510, 588, 664
MspA1I CMGCKG 1 cut(s) 216
MunI CAATTG 2 cut(s) 71, 435
Mva1269I GAATGC 1 cut(s) 488
MwoI GCNNNNNNNGC 2 cut(s) 395, 431
NdeI CATATG 1 cut(s) 24
NdeII GATC 1 cut(s) 19
NlaIII CATG 3 cut(s) 213, 249, 425
NmuCI GTSAC 1 cut(s) 118
NspI RCATGY 1 cut(s) 425
PaeI GCATGC 1 cut(s) 425
PctI GAATGC 1 cut(s) 488
PfeI GAWTC 3 cut(s) 356, 505, 569
PkrI GCNGC 1 cut(s) 215
PleI GAGTC 1 cut(s) 351
PpsI GAGTC 1 cut(s) 351
PspPI GGNCC 1 cut(s) 609
PvuII CAGCTG 1 cut(s) 216
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 5 cut(s) 135, 273, 510, 588, 664
SatI GCNGC 1 cut(s) 214
Sau3AI GATC 1 cut(s) 19
Sau96I GGNCC 1 cut(s) 609
SchI GAGTC 1 cut(s) 352
SfaNI GCATC 3 cut(s) 215, 421, 481
SfcI CTRYAG 2 cut(s) 217, 426
SphI GCATGC 1 cut(s) 425
Sse9I AATT 3 cut(s) 71, 293, 435
SspMI CTAG 3 cut(s) 98, 465, 648
TasI AATT 3 cut(s) 71, 293, 435
TatI WGTACW 1 cut(s) 306
TfiI GAWTC 3 cut(s) 356, 505, 569
Tru1I TTAA 5 cut(s) 135, 273, 510, 588, 664
Tru9I TTAA 5 cut(s) 135, 273, 510, 588, 664
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 3 cut(s) 72, 543, 606
XceI RCATGY 1 cut(s) 425
XspI CTAG 3 cut(s) 98, 465, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.