Rroxscaffold_6G00411190

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000164
Physical Location & Seq
Reverse (-)
33710645 .. 33713040
2396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411190.1

Sequence Viewer

Length: 597 bp
ATGGAGACTAATGGGATTATTGTACCTGCGGAAATGGAAACTGAACCTATTCAAGCTATCCCTCCGTCAGAAGAAAATGTCTCTACTTCAGCTTTCTATCCTCAAGTAAGGAATGAGCTTAAACCCTTCAAGGGTCAGCAATTTAAAACATGGGAAGAGGCACATGTTTTTTATACCAAATATGCATCTGCAGCTGGGTTTATTGTACGAATTGGTTCCAGTAAAAGGAGCAGAGCAACTAATGAGTTTATAAGGAAAGAGTTTTTTTGCAATAGACAAGGAAATAGTCCGATTGAATTGACTGGTGATGAGAAAAGGATTCGTGGTGTAGTAAGGGAGGACTGTAAGGCGAGAATGATAGTTGTGAGAGACAAGTCTGGTGGATTTGTAGTCAATATATTTGATGAAGCTCACACTCATCCTATGACAAGTCCAAAAAGACTCCACTTGCTGAAGTCCAATCGTCGACTTACTAAAGCTCAGAGATCATTATGGGAACAGCTATCCATGGTAAACATACCCACACACCAGCAATTTGACATTCTTGGAGATTTGCCATTTCCTTTTTATGATCTGTGTATGCAGAGGTCATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

198

Amino Acids

22.81

Weight (kDa)

9.1

Isoelectric Point (pI)

60.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 57 - 142 2.1e-19 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
Acc36I ACCTGC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 466
AciI CCGC 1 cut(s) 29
AcuI CTGAAG 2 cut(s) 72, 473
AfaI GTAC 2 cut(s) 24, 207
AfiI CCNNNNNNNGG 2 cut(s) 131, 225
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 3 cut(s) 53, 130, 296
AluBI AGCT 7 cut(s) 56, 92, 118, 194, 410, 479, 502
AluI AGCT 7 cut(s) 56, 92, 118, 194, 410, 479, 502
Alw26I GTCTC 2 cut(s) 85, 363
ApeKI GCWGC 1 cut(s) 191
Asp700I GAANNNNTTC 2 cut(s) 48, 214
AsuHPI GGTGA 1 cut(s) 317
BbvI GCAGC 1 cut(s) 203
BcoDI GTCTC 2 cut(s) 85, 363
BfmI CTRYAG 1 cut(s) 189
BfuAI ACCTGC 1 cut(s) 34
BisI GCNGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 217
BmsI GCATC 1 cut(s) 194
BpuEI CTTGAG 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 507
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 225
Bse1I ACTGG 2 cut(s) 219, 307
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 2 cut(s) 131, 225
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 2 cut(s) 219, 307
BseXI GCAGC 1 cut(s) 203
BseYI CCCAGC 1 cut(s) 194
BslI CCNNNNNNNGG 2 cut(s) 131, 225
BsmAI GTCTC 2 cut(s) 85, 363
Bsp143I GATC 2 cut(s) 485, 571
Bsp19I CCATGG 1 cut(s) 507
BspACI CCGC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 493
BspLI GGNNCC 1 cut(s) 217
BspMAI CTGCAG 1 cut(s) 193
BspMI ACCTGC 1 cut(s) 34
BsrI ACTGG 2 cut(s) 219, 307
BssECI CCNNGG 1 cut(s) 507
BssMI GATC 2 cut(s) 485, 571
BssT1I CCWWGG 1 cut(s) 507
Bst4CI ACNGT 1 cut(s) 344
Bst6I CTCTTC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 480
BstDSI CCRYGG 1 cut(s) 507
BstF5I GGATG 1 cut(s) 418
BstKTI GATC 2 cut(s) 488, 574
BstMAI GTCTC 2 cut(s) 85, 363
BstMBI GATC 2 cut(s) 485, 571
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNSI RCATGY 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 203
BtgI CCRYGG 1 cut(s) 507
BtsCI GGATG 1 cut(s) 418
BveI ACCTGC 1 cut(s) 34
Csp6I GTAC 2 cut(s) 23, 206
CspCI CAANNNNNGTGG 2 cut(s) 361, 396
CviAII CATG 4 cut(s) 150, 164, 508, 591
CviJI RGCY 7 cut(s) 56, 92, 118, 194, 410, 479, 502
CviKI_1 RGCY 7 cut(s) 56, 92, 118, 194, 410, 479, 502
CviQI GTAC 2 cut(s) 23, 206
DdeI CTNAG 1 cut(s) 480
DpnI GATC 2 cut(s) 487, 573
DpnII GATC 2 cut(s) 485, 571
DraI TTTAAA 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 507
Eco57I CTGAAG 2 cut(s) 72, 473
EcoT14I CCWWGG 1 cut(s) 507
EcoT22I ATGCAT 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 507
FaeI CATG 4 cut(s) 153, 167, 511, 594
FatI CATG 4 cut(s) 149, 163, 507, 590
FblI GTMKAC 1 cut(s) 466
Fnu4HI GCNGC 1 cut(s) 192
FokI GGATG 1 cut(s) 405
Fsp4HI GCNGC 1 cut(s) 192
GluI GCNGC 1 cut(s) 192
GsaI CCCAGC 1 cut(s) 198
Hin1II CATG 4 cut(s) 153, 167, 511, 594
HincII GTYRAC 1 cut(s) 467
HindII GTYRAC 1 cut(s) 467
HinfI GANTC 2 cut(s) 319, 441
HphI GGTGA 1 cut(s) 317
Hpy166II GTNNAC 2 cut(s) 467, 514
Hpy188I TCNGA 3 cut(s) 70, 291, 483
Hpy8I GTNNAC 2 cut(s) 467, 514
Hpy99I CGWCG 1 cut(s) 468
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4V TGCA 4 cut(s) 185, 191, 270, 583
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 1 cut(s) 480
Hsp92II CATG 4 cut(s) 153, 167, 511, 594
Kzo9I GATC 2 cut(s) 485, 571
LmnI GCTCC 1 cut(s) 228
LpnPI CCDG 6 cut(s) 39, 180, 232, 288, 363, 542
Lsp1109I GCAGC 1 cut(s) 203
LweI GCATC 1 cut(s) 194
MalI GATC 2 cut(s) 487, 573
MboI GATC 2 cut(s) 485, 571
MboII GAAGA 2 cut(s) 83, 167
MluCI AATT 4 cut(s) 140, 210, 296, 533
MlyI GAGTC 1 cut(s) 435
MnlI CCTC 5 cut(s) 72, 111, 151, 331, 579
Mph1103I ATGCAT 1 cut(s) 187
MroXI GAANNNNTTC 2 cut(s) 48, 214
MseI TTAA 2 cut(s) 120, 144
MspA1I CMGCKG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 191
NcoI CCATGG 1 cut(s) 507
NdeII GATC 2 cut(s) 485, 571
NlaIII CATG 4 cut(s) 153, 167, 511, 594
NlaIV GGNNCC 1 cut(s) 217
NsiI ATGCAT 1 cut(s) 187
NspI RCATGY 1 cut(s) 167
PciI ACATGT 1 cut(s) 163
PdmI GAANNNNTTC 2 cut(s) 48, 214
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 1 cut(s) 193
PleI GAGTC 1 cut(s) 435
PpsI GAGTC 1 cut(s) 435
PscI ACATGT 1 cut(s) 163
PsiI TTATAA 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 217
PstI CTGCAG 1 cut(s) 193
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 2 cut(s) 24, 207
RsaNI GTAC 2 cut(s) 23, 206
SalI GTCGAC 1 cut(s) 465
SaqAI TTAA 2 cut(s) 120, 144
SatI GCNGC 1 cut(s) 192
Sau3AI GATC 2 cut(s) 485, 571
SchI GAGTC 1 cut(s) 435
SfaNI GCATC 1 cut(s) 194
SfcI CTRYAG 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 4 cut(s) 140, 210, 296, 533
SsiI CCGC 1 cut(s) 29
StyI CCWWGG 1 cut(s) 507
TaaI ACNGT 1 cut(s) 344
TaqI TCGA 1 cut(s) 466
TasI AATT 4 cut(s) 140, 210, 296, 533
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 2 cut(s) 120, 144
Tru9I TTAA 2 cut(s) 120, 144
TseI GCWGC 1 cut(s) 191
TspDTI ATGAA 1 cut(s) 420
TspGWI ACGGA 1 cut(s) 54
XceI RCATGY 1 cut(s) 167
XmiI GTMKAC 1 cut(s) 466
XmnI GAANNNNTTC 2 cut(s) 48, 214
Zsp2I ATGCAT 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.