Rw1G014580

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000164
Physical Location & Seq
Forward (+)
32531572 .. 32532770
1199 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G014580.1

Sequence Viewer

Length: 1167 bp
ATGGAGTCAGAGGATGATCATGTTTATATTACTCAAGTAAAGGCAGAGTTGATGCCTATATTGCACCAAGAGTTTGAAACAATAGATGATGTTGCTGCTTTCTACAATAGATATGCAAAAGAAGCAGGGTTTAGTATCAAAAGTCATTCTAGTGCAACCAACAAAGATAATACCCAACTTATGAGGAAGGAGTACGTCTATTATAATCAAGGAACTTCCAAAGTTGAAGGAGAAAAACGTAAGAGAGGATTACCAAAAGTGGGTTGTAAAGCAAGAATTGCAACTGTGAGAAAGATGGAGTCTGGGAGATATGCAATCTCTGCATTTGTCGAGGGTCATAACTACCCATTAACAAGCCCACCTAGAGTACATTTGTTGAGATCTCACCTTGTTTCAAAATTTAACACAGTTCTATCACAGCACCTAAGCTTGGTAAATGTTCAGAAACATACACAGTTTGAATTCTTTGGTGTTCAGGCAGGTGACATTGAGAATATTGGTTGTACACAGCGTGATCTGTATAATTATAGAAGAACTTGTCGTGAAGCGAAAAAGGGGCATGATGGAGATCTATTGTACATGCATTTTCAAAATGAGAAAGAAAAAGATCCTTCTTTTGTCTATACAATGGAGTCAGATGAGGAAAATAGAGTAACAAGGTGCTTTTGGGCTGACTCAATTTCAAGACGAGCTTACAGCTTTTATGGAGATGTAGTTATCTTTGAATCTACATACAACACAAATCGGTATGGAATGATTTTTGCACCATTCACTGGTGTTAATAATCATGGGCAGACAATCATCTTTGCTTGTGCATTCTTAAATGATGAGACATCGATTCTTTTGTTTGGAAATGCACAAGAAAATGCCCCCAAAATGATTATTACTAACCAAGATCCTGCTATGACTAAAGCCATTTCAGAAGCACTCCCACAAACATTTCATAGATATTGCAGTTGGCACATTCTAAATAAATTTTCTGAAAAGCTAGATGCGATTAAATATCGGGATTACTACCAAGACTTTCATAGCTGCATATGGAATTCAAGTAGTAAAGCGGAGTTTGACTCAAGATGGATTGAAATTACTGAGAAGAGTGGGTTGAGTGATAACAAGTGGTTGAAGTCAATATATGAAATTCGTTGTCATGGATACCAGCACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

388

Amino Acids

45.13

Weight (kDa)

7.25

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 34 - 118 3.2e-15 FAR1 DNA-binding domain
MULE PF10551 238 - 324 4.6e-18 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AarI CACCTGC 1 cut(s) 470
Acc36I ACCTGC 1 cut(s) 470
AccB7I CCANNNNNTGG 1 cut(s) 773
AciI CCGC 1 cut(s) 1058
AclWI GGATC 2 cut(s) 602, 890
AcsI RAATTY 5 cut(s) 398, 461, 974, 1042, 1137
AdeI CACNNNGTG 1 cut(s) 512
AfaI GTAC 4 cut(s) 194, 369, 505, 578
AfiI CCNNNNNNNGG 3 cut(s) 260, 430, 773
AflIII ACRYGT 1 cut(s) 1161
AluBI AGCT 5 cut(s) 429, 692, 699, 988, 1032
AluI AGCT 5 cut(s) 429, 692, 699, 988, 1032
Alw26I GTCTC 1 cut(s) 824
AlwI GGATC 2 cut(s) 602, 890
ApeKI GCWGC 2 cut(s) 95, 1032
ApoI RAATTY 5 cut(s) 398, 461, 974, 1042, 1137
AsuHPI GGTGA 2 cut(s) 377, 494
BbvI GCAGC 2 cut(s) 82, 1019
BccI CCATC 3 cut(s) 289, 557, 1068
BciVI GTATCC 1 cut(s) 1145
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 824
BfaI CTAG 3 cut(s) 150, 363, 989
BfuAI ACCTGC 1 cut(s) 470
BfuI GTATCC 1 cut(s) 1145
BglII AGATCT 2 cut(s) 380, 568
BisI GCNGC 2 cut(s) 96, 1033
BlsI GCNGC 2 cut(s) 97, 1034
BmsI GCATC 2 cut(s) 42, 982
BplI GAGNNNNNCTC 2 cut(s) 1052, 1084
Bpu10I CCTNAGC 1 cut(s) 425
BpuEI CTTGAG 2 cut(s) 18, 1054
Bsa29I ATCGAT 1 cut(s) 836
BsaBI GATNNNNATC 1 cut(s) 567
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 430, 773
Bse1I ACTGG 1 cut(s) 778
Bse8I GATNNNNATC 1 cut(s) 567
BseCI ATCGAT 1 cut(s) 836
BseGI GGATG 1 cut(s) 19
BseJI GATNNNNATC 1 cut(s) 567
BseLI CCNNNNNNNGG 3 cut(s) 260, 430, 773
BseMII CTCAG 1 cut(s) 1080
BseNI ACTGG 1 cut(s) 778
BseXI GCAGC 2 cut(s) 82, 1019
BshVI ATCGAT 1 cut(s) 836
BslI CCNNNNNNNGG 3 cut(s) 260, 430, 773
BsmAI GTCTC 1 cut(s) 824
BsmI GAATGC 1 cut(s) 815
Bsp1407I TGTACA 2 cut(s) 503, 576
Bsp143I GATC 6 cut(s) 16, 380, 514, 568, 607, 895
BspACI CCGC 1 cut(s) 1058
BspCNI CTCAG 1 cut(s) 1081
BspDI ATCGAT 1 cut(s) 836
BspMI ACCTGC 1 cut(s) 470
BspPI GGATC 2 cut(s) 602, 890
BsrGI TGTACA 2 cut(s) 503, 576
BsrI ACTGG 1 cut(s) 778
BssMI GATC 6 cut(s) 16, 380, 514, 568, 607, 895
Bst4CI ACNGT 3 cut(s) 286, 409, 456
Bst6I CTCTTC 1 cut(s) 1088
BstAPI GCANNNNNTGC 2 cut(s) 278, 320
BstAUI TGTACA 2 cut(s) 503, 576
BstDEI CTNAG 2 cut(s) 425, 1089
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 6 cut(s) 19, 383, 517, 571, 610, 898
BstMAI GTCTC 1 cut(s) 824
BstMBI GATC 6 cut(s) 16, 380, 514, 568, 607, 895
BstMWI GCNNNNNNNGC 4 cut(s) 61, 122, 278, 320
BstNSI RCATGY 2 cut(s) 583, 1165
BstV1I GCAGC 2 cut(s) 82, 1019
BstX2I RGATCY 4 cut(s) 380, 568, 607, 895
BstYI RGATCY 4 cut(s) 380, 568, 607, 895
Bsu15I ATCGAT 1 cut(s) 836
BsuI GTATCC 1 cut(s) 1145
BsuTUI ATCGAT 1 cut(s) 836
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 1 cut(s) 771
BveI ACCTGC 1 cut(s) 470
ClaI ATCGAT 1 cut(s) 836
Csp6I GTAC 4 cut(s) 193, 368, 504, 577
CviAII CATG 6 cut(s) 20, 560, 580, 788, 1148, 1162
CviJI RGCY 8 cut(s) 357, 429, 671, 692, 699, 914, 988, 1032
CviKI_1 RGCY 8 cut(s) 357, 429, 671, 692, 699, 914, 988, 1032
CviQI GTAC 4 cut(s) 193, 368, 504, 577
DdeI CTNAG 2 cut(s) 425, 1089
DpnI GATC 6 cut(s) 18, 382, 516, 570, 609, 897
DpnII GATC 6 cut(s) 16, 380, 514, 568, 607, 895
DraIII CACNNNGTG 1 cut(s) 512
Eam1104I CTCTTC 1 cut(s) 1088
EarI CTCTTC 1 cut(s) 1088
EcoRI GAATTC 2 cut(s) 461, 1042
EcoT22I ATGCAT 1 cut(s) 585
FaeI CATG 6 cut(s) 23, 563, 583, 791, 1151, 1165
FalI AAGNNNNNCTT 2 cut(s) 676, 708
FatI CATG 6 cut(s) 19, 559, 579, 787, 1147, 1161
FauNDI CATATG 1 cut(s) 1037
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 2 cut(s) 96, 1033
FokI GGATG 1 cut(s) 26
Fsp4HI GCNGC 2 cut(s) 96, 1033
FspBI CTAG 3 cut(s) 150, 363, 989
GluI GCNGC 2 cut(s) 96, 1033
Hin1II CATG 6 cut(s) 23, 563, 583, 791, 1151, 1165
HindIII AAGCTT 1 cut(s) 427
HinfI GANTC 7 cut(s) 5, 299, 632, 674, 725, 838, 1067
HphI GGTGA 2 cut(s) 377, 494
Hpy166II GTNNAC 1 cut(s) 506
Hpy188I TCNGA 5 cut(s) 10, 444, 637, 922, 982
Hpy188III TCNNGA 4 cut(s) 542, 684, 1007, 1071
Hpy8I GTNNAC 1 cut(s) 506
HpyAV CCTTC 3 cut(s) 181, 221, 621
HpyCH4III ACNGT 3 cut(s) 286, 409, 456
HpyCH4IV ACGT 2 cut(s) 195, 238
HpyF10VI GCNNNNNNNGC 4 cut(s) 61, 122, 278, 320
HpyF3I CTNAG 2 cut(s) 425, 1089
HpySE526I ACGT 2 cut(s) 195, 238
Hsp92II CATG 6 cut(s) 23, 563, 583, 791, 1151, 1165
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 6 cut(s) 16, 380, 514, 568, 607, 895
LpnPI CCDG 6 cut(s) 111, 288, 461, 465, 759, 912
Lsp1109I GCAGC 2 cut(s) 82, 1019
LweI GCATC 2 cut(s) 42, 982
MaeI CTAG 3 cut(s) 150, 363, 989
MaeII ACGT 2 cut(s) 195, 238
MaeIII GTNAC 2 cut(s) 482, 652
MalI GATC 6 cut(s) 18, 382, 516, 570, 609, 897
MboI GATC 6 cut(s) 16, 380, 514, 568, 607, 895
MboII GAAGA 2 cut(s) 543, 1105
MflI RGATCY 4 cut(s) 380, 568, 607, 895
MluCI AATT 9 cut(s) 276, 398, 461, 523, 678, 974, 1042, 1083, 1137
MlyI GAGTC 5 cut(s) 14, 308, 641, 668, 1061
MnlI CCTC 5 cut(s) 4, 177, 239, 325, 634
Mph1103I ATGCAT 1 cut(s) 585
MseI TTAA 5 cut(s) 350, 402, 780, 821, 999
MslI CAYNNNNRTG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 815
MwoI GCNNNNNNNGC 4 cut(s) 61, 122, 278, 320
NdeI CATATG 1 cut(s) 1037
NdeII GATC 6 cut(s) 16, 380, 514, 568, 607, 895
NlaIII CATG 6 cut(s) 23, 563, 583, 791, 1151, 1165
NmuCI GTSAC 1 cut(s) 482
NsiI ATGCAT 1 cut(s) 585
NspI RCATGY 2 cut(s) 583, 1165
PaqCI CACCTGC 1 cut(s) 470
PciI ACATGT 1 cut(s) 1161
PctI GAATGC 1 cut(s) 815
PfeI GAWTC 2 cut(s) 725, 838
PflMI CCANNNNNTGG 1 cut(s) 773
PkrI GCNGC 2 cut(s) 97, 1034
PleI GAGTC 5 cut(s) 13, 307, 640, 668, 1061
PpsI GAGTC 5 cut(s) 13, 307, 640, 668, 1061
PscI ACATGT 1 cut(s) 1161
PsiI TTATAA 1 cut(s) 204
PsuI RGATCY 4 cut(s) 380, 568, 607, 895
RsaI GTAC 4 cut(s) 194, 369, 505, 578
RsaNI GTAC 4 cut(s) 193, 368, 504, 577
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 5 cut(s) 350, 402, 780, 821, 999
SatI GCNGC 2 cut(s) 96, 1033
Sau3AI GATC 6 cut(s) 16, 380, 514, 568, 607, 895
SchI GAGTC 5 cut(s) 14, 308, 641, 668, 1061
SfaNI GCATC 2 cut(s) 42, 982
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 2 cut(s) 33, 1069
SmoI CTYRAG 2 cut(s) 33, 1069
Sse9I AATT 9 cut(s) 276, 398, 461, 523, 678, 974, 1042, 1083, 1137
SsiI CCGC 1 cut(s) 1058
SspI AATATT 1 cut(s) 496
SspMI CTAG 3 cut(s) 150, 363, 989
TaaI ACNGT 3 cut(s) 286, 409, 456
TaiI ACGT 2 cut(s) 198, 241
TaqI TCGA 2 cut(s) 330, 836
TasI AATT 9 cut(s) 276, 398, 461, 523, 678, 974, 1042, 1083, 1137
TatI WGTACW 3 cut(s) 367, 503, 576
TfiI GAWTC 2 cut(s) 725, 838
Tru1I TTAA 5 cut(s) 350, 402, 780, 821, 999
Tru9I TTAA 5 cut(s) 350, 402, 780, 821, 999
TscAI CASTG 1 cut(s) 778
TseFI GTSAC 1 cut(s) 482
TseI GCWGC 2 cut(s) 95, 1032
Tsp45I GTSAC 1 cut(s) 482
TspDTI ATGAA 3 cut(s) 932, 1016, 1149
TspRI CASTG 1 cut(s) 778
Van91I CCANNNNNTGG 1 cut(s) 773
XapI RAATTY 5 cut(s) 398, 461, 974, 1042, 1137
XceI RCATGY 2 cut(s) 583, 1165
XspI CTAG 3 cut(s) 150, 363, 989
Zsp2I ATGCAT 1 cut(s) 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.