Rmu_sc0016125.1_g000003

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016125.1
OG0000164
Physical Location & Seq
Reverse (-)
12270 .. 13588
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016125.1_g000003.1.cds

Sequence Viewer

Length: 1083 bp
atgggcaaacaatcatctttgctttgcaaacaatcatcatatctattaaatgatgagacagccgatacttttgtttggttattcaaggaatttctaaatgctatgccaggagatgcacaagaaaatgcccccaagatgattattacctaccaagatcctgctatgactaaagccattgcagaagcactcccacaaacatttcatagatattgtagttggcacattcttaataaattttctgagaagctagatgcaattaaatatcgggattcctaccaagactttcatagctgcatatggaattcaagtagtagagaggagtttgactcaagatggattgaaattgttgagaagagtgggttgagtgataacaagtggctggagtcgatatacgaaatttgttcatcatggataccatttaagaggggacttcttcaccaatgccattctgagttagaggaggatcatattaatattgatgagaaggcaaaaactgtcatgtcccttgacatggaagatcatatggccaagaacattgatacttacaagtctcgtgaactcacttacgaaaagaattctgattttgcatcatgcagctgtagaaagtttgacagtgaagggttcccatttcggcatgttttggcatatttgattaagatccaagatgttgataaattgcctattcagtacatcttgaagagatggactaaagctgtaagacagagagttgtgatagattctgatggaatcgagataaaagataataaagctttacttgcaaggaggactaaactattccagcatgctacatatgcaattgataaggttatggtgagtgatgaggctacacagctctttatggaagcattggatgcttttttggagaatattaaaccattaattagtaatgaaagtggacaacgtacagtaggtttggagaccaaggccgatactattcaacatgtttttaatgaactagatcaagtgagagcaaaagggtgtggcagaaggttgaagaaaggaaaagagaagaagaaagttaaggtcaaggatagtcaaggtaggcagtgccatggatgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

360

Amino Acids

41.78

Weight (kDa)

7.14

Isoelectric Point (pI)

55.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 149, 471, 652
AcoI YGGCCR 1 cut(s) 525
AcsI RAATTY 5 cut(s) 89, 233, 301, 396, 574
AfaI GTAC 2 cut(s) 689, 925
AfiI CCNNNNNNNGG 1 cut(s) 511
AflIII ACRYGT 1 cut(s) 961
AgsI TTSAA 6 cut(s) 85, 306, 341, 697, 959, 1015
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 6 cut(s) 247, 291, 597, 713, 770, 853
AluI AGCT 6 cut(s) 247, 291, 597, 713, 770, 853
Alw26I GTCTC 3 cut(s) 50, 555, 932
AlwI GGATC 3 cut(s) 149, 471, 652
AoxI GGCC 2 cut(s) 525, 945
ApeKI GCWGC 2 cut(s) 291, 594
ApoI RAATTY 5 cut(s) 89, 233, 301, 396, 574
AseI ATTAAT 2 cut(s) 471, 899
AsuHPI GGTGA 2 cut(s) 428, 844
BaeI ACNNNNGTAYC 2 cut(s) 57, 90
BalI TGGCCA 1 cut(s) 527
BauI CACGAG 1 cut(s) 552
BbvI GCAGC 2 cut(s) 278, 606
BccI CCATC 3 cut(s) 327, 696, 737
BciT130I CCWGG 1 cut(s) 108
BciVI GTATCC 1 cut(s) 405
BcoDI GTCTC 3 cut(s) 50, 555, 932
BfaI CTAG 2 cut(s) 248, 977
BfmI CTRYAG 1 cut(s) 598
BfuI GTATCC 1 cut(s) 405
BisI GCNGC 2 cut(s) 292, 595
BlsI GCNGC 2 cut(s) 293, 596
Bme1390I CCNGG 1 cut(s) 108
BmiI GGNNCC 1 cut(s) 623
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 4 cut(s) 103, 241, 596, 862
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BpmI CTGGAG 1 cut(s) 401
BpuEI CTTGAG 1 cut(s) 313
BsaBI GATNNNNATC 1 cut(s) 656
BsaI GGTCTC 1 cut(s) 932
BsaJI CCNNGG 2 cut(s) 942, 1072
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse3DI GCAATG 1 cut(s) 174
Bse8I GATNNNNATC 1 cut(s) 656
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 2 cut(s) 942, 1072
BseGI GGATG 2 cut(s) 877, 1082
BseJI GATNNNNATC 1 cut(s) 656
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMI GCAATG 1 cut(s) 174
BseMII CTCAG 2 cut(s) 231, 441
BseRI GAGGAG 2 cut(s) 332, 473
BseXI GCAGC 2 cut(s) 278, 606
BshFI GGCC 2 cut(s) 527, 947
BslFI GGGAC 2 cut(s) 441, 487
BslI CCNNNNNNNGG 1 cut(s) 511
BsmAI GTCTC 3 cut(s) 50, 555, 932
BsmFI GGGAC 2 cut(s) 441, 487
BsnI GGCC 2 cut(s) 527, 947
Bso31I GGTCTC 1 cut(s) 932
Bsp143I GATC 5 cut(s) 154, 463, 517, 657, 979
Bsp19I CCATGG 1 cut(s) 1072
BspANI GGCC 2 cut(s) 527, 947
BspCNI CTCAG 2 cut(s) 232, 442
BspLI GGNNCC 1 cut(s) 623
BspPI GGATC 3 cut(s) 149, 471, 652
BspTNI GGTCTC 1 cut(s) 932
BsrDI GCAATG 1 cut(s) 174
BssECI CCNNGG 2 cut(s) 942, 1072
BssMI GATC 5 cut(s) 154, 463, 517, 657, 979
BssSI CACGAG 1 cut(s) 552
BssT1I CCWWGG 2 cut(s) 942, 1072
Bst2BI CACGAG 1 cut(s) 552
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 3 cut(s) 496, 614, 928
Bst6I CTCTTC 2 cut(s) 347, 692
BstAPI GCANNNNNTGC 1 cut(s) 872
BstC8I GCNNGC 1 cut(s) 804
BstDEI CTNAG 2 cut(s) 240, 450
BstDSI CCRYGG 1 cut(s) 1072
BstF5I GGATG 2 cut(s) 877, 1082
BstKTI GATC 5 cut(s) 157, 466, 520, 660, 982
BstMAI GTCTC 3 cut(s) 50, 555, 932
BstMBI GATC 5 cut(s) 154, 463, 517, 657, 979
BstMWI GCNNNNNNNGC 3 cut(s) 776, 812, 872
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 3 cut(s) 638, 806, 965
BstSCI CCNGG 1 cut(s) 106
BstSFI CTRYAG 1 cut(s) 598
BstV1I GCAGC 2 cut(s) 278, 606
BstX2I RGATCY 2 cut(s) 154, 657
BstYI RGATCY 2 cut(s) 154, 657
BsuI GTATCC 1 cut(s) 405
BsuRI GGCC 2 cut(s) 527, 947
BtgI CCRYGG 1 cut(s) 1072
BtsCI GGATG 2 cut(s) 877, 1082
BtsI GCAGTG 1 cut(s) 1073
BtsIMutI CAGTG 2 cut(s) 619, 1073
Cac8I GCNNGC 1 cut(s) 804
Csp6I GTAC 2 cut(s) 688, 924
CviAII CATG 8 cut(s) 408, 499, 511, 591, 635, 803, 962, 1073
CviQI GTAC 2 cut(s) 688, 924
DdeI CTNAG 2 cut(s) 240, 450
DpnI GATC 5 cut(s) 156, 465, 519, 659, 981
DpnII GATC 5 cut(s) 154, 463, 517, 657, 979
EaeI YGGCCR 1 cut(s) 525
Eam1104I CTCTTC 2 cut(s) 347, 692
EarI CTCTTC 2 cut(s) 347, 692
Eco130I CCWWGG 2 cut(s) 942, 1072
Eco31I GGTCTC 1 cut(s) 932
EcoRI GAATTC 2 cut(s) 301, 574
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 942, 1072
ErhI CCWWGG 2 cut(s) 942, 1072
FaeI CATG 8 cut(s) 411, 502, 514, 594, 638, 806, 965, 1076
FalI AAGNNNNNCTT 2 cut(s) 759, 791
FaqI GGGAC 2 cut(s) 441, 487
FatI CATG 8 cut(s) 407, 498, 510, 590, 634, 802, 961, 1072
FauNDI CATATG 3 cut(s) 296, 522, 811
Fnu4HI GCNGC 2 cut(s) 292, 595
FokI GGATG 1 cut(s) 884
Fsp4HI GCNGC 2 cut(s) 292, 595
FspBI CTAG 2 cut(s) 248, 977
GluI GCNGC 2 cut(s) 292, 595
GsuI CTGGAG 1 cut(s) 401
HaeIII GGCC 2 cut(s) 527, 947
Hin1II CATG 8 cut(s) 411, 502, 514, 594, 638, 806, 965, 1076
HindIII AAGCTT 1 cut(s) 768
HinfI GANTC 5 cut(s) 269, 326, 383, 737, 747
HphI GGTGA 2 cut(s) 428, 844
Hpy166II GTNNAC 2 cut(s) 557, 917
Hpy188I TCNGA 4 cut(s) 241, 451, 580, 742
Hpy188III TCNNGA 5 cut(s) 266, 330, 554, 694, 751
Hpy8I GTNNAC 2 cut(s) 557, 917
HpyAV CCTTC 3 cut(s) 478, 611, 1002
HpyCH4III ACNGT 3 cut(s) 496, 614, 928
HpyCH4IV ACGT 1 cut(s) 922
HpyCH4V TGCA 9 cut(s) 27, 116, 179, 254, 294, 587, 594, 779, 815
HpyF10VI GCNNNNNNNGC 3 cut(s) 776, 812, 872
HpyF3I CTNAG 2 cut(s) 240, 450
HpySE526I ACGT 1 cut(s) 922
Hsp92II CATG 8 cut(s) 411, 502, 514, 594, 638, 806, 965, 1076
Kzo9I GATC 5 cut(s) 154, 463, 517, 657, 979
LpnPI CCDG 5 cut(s) 93, 120, 171, 365, 812
Lsp1109I GCAGC 2 cut(s) 278, 606
LweI GCATC 4 cut(s) 103, 241, 596, 862
MaeI CTAG 2 cut(s) 248, 977
MaeII ACGT 1 cut(s) 922
MalI GATC 5 cut(s) 156, 465, 519, 659, 981
MboI GATC 5 cut(s) 154, 463, 517, 657, 979
MboII GAAGA 7 cut(s) 364, 425, 527, 709, 1027, 1042, 1045
MfeI CAATTG 1 cut(s) 816
MflI RGATCY 2 cut(s) 154, 657
MlsI TGGCCA 1 cut(s) 527
MluNI TGGCCA 1 cut(s) 527
MlyI GAGTC 2 cut(s) 320, 392
MnlI CCTC 6 cut(s) 310, 417, 451, 454, 777, 835
Mox20I TGGCCA 1 cut(s) 527
MscI TGGCCA 1 cut(s) 527
Msp20I TGGCCA 1 cut(s) 527
MspA1I CMGCKG 1 cut(s) 597
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 816
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 3 cut(s) 776, 812, 872
NcoI CCATGG 1 cut(s) 1072
NdeI CATATG 3 cut(s) 296, 522, 811
NdeII GATC 5 cut(s) 154, 463, 517, 657, 979
NlaIII CATG 8 cut(s) 411, 502, 514, 594, 638, 806, 965, 1076
NlaIV GGNNCC 1 cut(s) 623
NspI RCATGY 3 cut(s) 638, 806, 965
PaeI GCATGC 1 cut(s) 806
PciI ACATGT 1 cut(s) 961
PfeI GAWTC 3 cut(s) 269, 737, 747
PkrI GCNGC 2 cut(s) 293, 596
PleI GAGTC 2 cut(s) 320, 391
PpsI GAGTC 2 cut(s) 320, 391
PscI ACATGT 1 cut(s) 961
PshBI ATTAAT 2 cut(s) 471, 899
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 623
PsuI RGATCY 2 cut(s) 154, 657
PvuII CAGCTG 1 cut(s) 597
RsaI GTAC 2 cut(s) 689, 925
RsaNI GTAC 2 cut(s) 688, 924
SatI GCNGC 2 cut(s) 292, 595
Sau3AI GATC 5 cut(s) 154, 463, 517, 657, 979
SchI GAGTC 2 cut(s) 320, 392
ScrFI CCNGG 1 cut(s) 108
SfaNI GCATC 4 cut(s) 103, 241, 596, 862
SfcI CTRYAG 1 cut(s) 598
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
SphI GCATGC 1 cut(s) 806
SspI AATATT 2 cut(s) 475, 889
SspMI CTAG 2 cut(s) 248, 977
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 2 cut(s) 942, 1072
TaaI ACNGT 3 cut(s) 496, 614, 928
TaiI ACGT 1 cut(s) 925
TaqI TCGA 2 cut(s) 386, 750
TatI WGTACW 1 cut(s) 687
TfiI GAWTC 3 cut(s) 269, 737, 747
TscAI CASTG 2 cut(s) 619, 1073
TseI GCWGC 2 cut(s) 291, 594
TspDTI ATGAA 5 cut(s) 191, 275, 393, 924, 987
TspRI CASTG 2 cut(s) 619, 1073
VspI ATTAAT 2 cut(s) 471, 899
XapI RAATTY 5 cut(s) 89, 233, 301, 396, 574
XceI RCATGY 3 cut(s) 638, 806, 965
XspI CTAG 2 cut(s) 248, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.