Rorug01G0217300

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
31063617 .. 31071591
7975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0217300.1

Sequence Viewer

Length: 669 bp
ATGGTTGATAGGTGCGTGATTCCAGGGTGGGCTAAGGTGGAGTTGCTAAGTCGGTTGCGTTCTCCATATTTTCTTTCGTTGCTTGGGTATTGTTCAGATAACAGTCGTAAGCTGTTGGTGTATGAGTTTATGGCAAATGGTGGATTGCAGGAACATTTGTATCCTGTCAGTGGTGGTCCTAATGCCCTCTCCACAAACTTAGACTGGGAAACCCGGTTGAGAATAGCTCTTGAAGCTGCGAAAGGTTTGGAGTATCTCCATGAACAAGTTAGTCCTCCAGTGATACACAGAGATTTTAAGAGCAGCAACATTCTCTTGGACAAAACATTCCATGCCAAAGTTTCTGATTTCGGATTGGCCAAACTTGGATCTGACAAAGCTGGAGGTTATGTTTCCACCAGAGTGTTGGGCACACAGGGATATGTTGCCCCTGAGTATGCATTAACAGGGCATCTGACAACTAAATCAGATGTGTACAGTTATGGGGTTGTGCTGTTGGAATTGCTAACAGGCAGAGTTCCAGTTGATATGAAGAGACCCCCTGGAGAAGGTGTTCTCGTTTCTTGGCTGAATAATAATATCCATGTATCCAAGAAGGAGCACAAAAGCAAAAAAATTCAGCCAGGAATCTCTGATATAGTTGAATTGCTGGATGCTTACAGAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

222

Amino Acids

24.57

Weight (kDa)

8.73

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 12 - 178 7.2e-33 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 13 - 178 7.4e-32 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 376
AcoI YGGCCR 1 cut(s) 357
AcsI RAATTY 1 cut(s) 615
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 2 cut(s) 170, 548
AgsI TTSAA 2 cut(s) 233, 644
AjnI CCWGG 3 cut(s) 22, 541, 622
AleI CACNNNNGTG 1 cut(s) 401
AloI GAACNNNNNNTCC 2 cut(s) 537, 569
AluBI AGCT 4 cut(s) 112, 227, 236, 380
AluI AGCT 4 cut(s) 112, 227, 236, 380
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 1 cut(s) 529
AlwI GGATC 1 cut(s) 376
AoxI GGCC 1 cut(s) 357
ApeKI GCWGC 2 cut(s) 236, 303
ApoI RAATTY 1 cut(s) 615
Asp700I GAANNNNTTC 1 cut(s) 552
AspS9I GGNCC 1 cut(s) 176
AsuC2I CCSGG 1 cut(s) 214
AvaII GGWCC 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 413
BaeI ACNNNNGTAYC 2 cut(s) 143, 176
BalI TGGCCA 1 cut(s) 359
Bbv12I GWGCWC 1 cut(s) 603
BbvI GCAGC 2 cut(s) 223, 315
BciT130I CCWGG 3 cut(s) 24, 543, 624
BciVI GTATCC 2 cut(s) 171, 598
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 1 cut(s) 529
BfuI GTATCC 2 cut(s) 171, 598
BisI GCNGC 2 cut(s) 237, 304
BlsI GCNGC 2 cut(s) 238, 305
Bme1390I CCNGG 4 cut(s) 24, 214, 543, 624
Bme18I GGWCC 1 cut(s) 176
BmgT120I GGNCC 1 cut(s) 176
BmrFI CCNGG 4 cut(s) 24, 214, 543, 624
BmrI ACTGGG 1 cut(s) 214
BmsI GCATC 2 cut(s) 460, 643
BmuI ACTGGG 1 cut(s) 214
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BpmI CTGGAG 3 cut(s) 261, 402, 564
Bpu10I CCTNAGC 1 cut(s) 33
BpuMI CCSGG 1 cut(s) 214
BsaI GGTCTC 1 cut(s) 529
BsaJI CCNNGG 2 cut(s) 23, 541
BsaXI ACNNNNNCTCC 4 cut(s) 375, 405, 537, 567
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 548
Bse1I ACTGG 3 cut(s) 209, 278, 521
BseBI CCWGG 3 cut(s) 24, 543, 624
BseDI CCNNGG 2 cut(s) 23, 541
BseGI GGATG 1 cut(s) 658
BseLI CCNNNNNNNGG 2 cut(s) 170, 548
BseMII CTCAG 1 cut(s) 423
BseNI ACTGG 3 cut(s) 209, 278, 521
BseSI GKGCMC 1 cut(s) 413
BseXI GCAGC 2 cut(s) 223, 315
BshFI GGCC 1 cut(s) 359
BsiHKAI GWGCWC 1 cut(s) 603
BsiSI CCGG 1 cut(s) 214
BslI CCNNNNNNNGG 2 cut(s) 170, 548
BsmAI GTCTC 1 cut(s) 529
BsnI GGCC 1 cut(s) 359
Bso31I GGTCTC 1 cut(s) 529
Bsp1286I GDGCHC 2 cut(s) 413, 603
Bsp1407I TGTACA 1 cut(s) 474
Bsp143I GATC 1 cut(s) 368
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 1 cut(s) 424
BspPI GGATC 1 cut(s) 376
BspTNI GGTCTC 1 cut(s) 529
BsrGI TGTACA 1 cut(s) 474
BsrI ACTGG 3 cut(s) 209, 278, 521
BssECI CCNNGG 2 cut(s) 23, 541
BssMI GATC 1 cut(s) 368
Bst2UI CCWGG 3 cut(s) 24, 543, 624
Bst4CI ACNGT 2 cut(s) 104, 479
Bst6I CTCTTC 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 474
BstDEI CTNAG 4 cut(s) 33, 47, 199, 432
BstENI CCTNNNNNAGG 1 cut(s) 546
BstF5I GGATG 1 cut(s) 658
BstKTI GATC 1 cut(s) 371
BstMAI GTCTC 1 cut(s) 529
BstMBI GATC 1 cut(s) 368
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 3 cut(s) 24, 543, 624
BstSCI CCNGG 4 cut(s) 22, 212, 541, 622
BstSLI GKGCMC 1 cut(s) 413
BstV1I GCAGC 2 cut(s) 223, 315
BstX2I RGATCY 1 cut(s) 368
BstXI CCANNNNNNTGG 1 cut(s) 406
BstYI RGATCY 1 cut(s) 368
BsuI GTATCC 2 cut(s) 171, 598
BsuRI GGCC 1 cut(s) 359
BtsCI GGATG 1 cut(s) 658
BtsIMutI CAGTG 2 cut(s) 175, 285
Cfr13I GGNCC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 475
CviAII CATG 3 cut(s) 260, 332, 584
CviJI RGCY 8 cut(s) 32, 112, 227, 236, 359, 380, 568, 622
CviKI_1 RGCY 8 cut(s) 32, 112, 227, 236, 359, 380, 568, 622
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 4 cut(s) 33, 47, 199, 432
DpnI GATC 1 cut(s) 370
DpnII GATC 1 cut(s) 368
EaeI YGGCCR 1 cut(s) 357
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
Eco31I GGTCTC 1 cut(s) 529
Eco47I GGWCC 1 cut(s) 176
EcoNI CCTNNNNNAGG 1 cut(s) 546
EcoRII CCWGG 3 cut(s) 22, 541, 622
EcoT22I ATGCAT 1 cut(s) 442
FaeI CATG 3 cut(s) 263, 335, 587
FatI CATG 3 cut(s) 259, 331, 583
Fnu4HI GCNGC 2 cut(s) 237, 304
FokI GGATG 1 cut(s) 665
Fsp4HI GCNGC 2 cut(s) 237, 304
GluI GCNGC 2 cut(s) 237, 304
GsuI CTGGAG 3 cut(s) 261, 402, 564
HaeIII GGCC 1 cut(s) 359
HapII CCGG 1 cut(s) 214
Hin1II CATG 3 cut(s) 263, 335, 587
HinfI GANTC 2 cut(s) 19, 627
HpaII CCGG 1 cut(s) 214
Hpy166II GTNNAC 1 cut(s) 475
Hpy188I TCNGA 7 cut(s) 97, 346, 353, 373, 456, 469, 634
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 475
HpyAV CCTTC 2 cut(s) 542, 589
HpyCH4III ACNGT 2 cut(s) 104, 479
HpyCH4V TGCA 2 cut(s) 148, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 4 cut(s) 33, 47, 199, 432
Hsp92II CATG 3 cut(s) 263, 335, 587
Kzo9I GATC 1 cut(s) 368
LmnI GCTCC 1 cut(s) 598
Lsp1109I GCAGC 2 cut(s) 223, 315
LweI GCATC 2 cut(s) 460, 643
MalI GATC 1 cut(s) 370
MboI GATC 1 cut(s) 368
MboII GAAGA 1 cut(s) 544
MflI RGATCY 1 cut(s) 368
MhlI GDGCHC 2 cut(s) 413, 603
MlsI TGGCCA 1 cut(s) 359
MluCI AATT 3 cut(s) 500, 615, 644
MluNI TGGCCA 1 cut(s) 359
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 4 cut(s) 197, 285, 377, 656
Mox20I TGGCCA 1 cut(s) 359
Mph1103I ATGCAT 1 cut(s) 442
MroXI GAANNNNTTC 1 cut(s) 552
MscI TGGCCA 1 cut(s) 359
MseI TTAA 3 cut(s) 297, 443, 667
MslI CAYNNNNRTG 1 cut(s) 401
Msp20I TGGCCA 1 cut(s) 359
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 4 cut(s) 24, 214, 543, 624
MvaI CCWGG 3 cut(s) 24, 543, 624
MwoI GCNNNNNNNGC 1 cut(s) 233
NciI CCSGG 1 cut(s) 214
NdeII GATC 1 cut(s) 368
NlaIII CATG 3 cut(s) 263, 335, 587
NsiI ATGCAT 1 cut(s) 442
OliI CACNNNNGTG 1 cut(s) 401
PdmI GAANNNNTTC 1 cut(s) 552
PfeI GAWTC 2 cut(s) 19, 627
PkrI GCNGC 2 cut(s) 238, 305
Psp6I CCWGG 3 cut(s) 22, 541, 622
PspGI CCWGG 3 cut(s) 22, 541, 622
PspPI GGNCC 1 cut(s) 176
PsuI RGATCY 1 cut(s) 368
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 3 cut(s) 297, 443, 667
SatI GCNGC 2 cut(s) 237, 304
Sau3AI GATC 1 cut(s) 368
Sau96I GGNCC 1 cut(s) 176
ScrFI CCNGG 4 cut(s) 24, 214, 543, 624
SduI GDGCHC 2 cut(s) 413, 603
SfaNI GCATC 2 cut(s) 460, 643
SinI GGWCC 1 cut(s) 176
SmiMI CAYNNNNRTG 1 cut(s) 401
Sse9I AATT 3 cut(s) 500, 615, 644
StyD4I CCNGG 4 cut(s) 22, 212, 541, 622
TaaI ACNGT 2 cut(s) 104, 479
TasI AATT 3 cut(s) 500, 615, 644
TatI WGTACW 1 cut(s) 474
TfiI GAWTC 2 cut(s) 19, 627
Tru1I TTAA 3 cut(s) 297, 443, 667
Tru9I TTAA 3 cut(s) 297, 443, 667
TscAI CASTG 2 cut(s) 175, 285
TseI GCWGC 2 cut(s) 236, 303
TspDTI ATGAA 2 cut(s) 276, 545
TspRI CASTG 2 cut(s) 175, 285
VpaK11BI GGWCC 1 cut(s) 176
XagI CCTNNNNNAGG 1 cut(s) 546
XapI RAATTY 1 cut(s) 615
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XmnI GAANNNNTTC 1 cut(s) 552
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.