FvH4_5g31093

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000164
Physical Location & Seq
Reverse (-)
22032445 .. 22033167
723 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31093.t1

Sequence Viewer

Length: 723 bp
ATGCGTGAGGTGTACACAAAGGAAATATTTTTGAGGTTCCAAGATCAGGTTGTCAAGAGTACAGCTTACTTGAAATGTGAAACTTTGAAGGAGGATGAACATGACTGTGTGTATACTGTTTTAAGGGCTGCAGATGATGAACAAAGCTGGAAAGTGCGACAAATTATTCATGACAAAGTATCTGGTTTTGCCAAATGTAGTTGTGGAGGCTTTGAGGTTGAAGGAATTGCATGTAGGCATATCATTTTCTTCCTTCGAAGTATTAATATTGTACATTTGCCAAATGAATACATCCTGGATAGGTGGACAAAAAATGCAAAAGTTGGAAGAGTTTGGGATGATGATGGTATCGAAGTGAGAGATGTGGGTGATAAGTCATTGATGATGAGATATATTCAATTGTCTCAACTTTCACAAGTTGTAATTGATGAGGCATCTCTTTCAGAAGAATCAACAAAATATCTCACAGATGGACTCCATTCGCTTCGTCTTGGAATTAAAGAACTGCTCACAAGTCTTGGTGTTGAGGAAGTTCCTGTTACAAAAAAGAGAATACCTCAGCAAATACTCATTGAAGAACCATCTCAATCAAAGGCTAAAGGAAGTGGGAAGAGGTTGAAGTCATCCAAAGAAATTGCAATGAGTAAGCAGAAAAACTGTGGAAAATGTGGTAGAACTGGTCATAACATCAAAACTTGTGACAAGCATAATACTGAAGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

241

Amino Acids

27.31

Weight (kDa)

8.34

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 62 - 83 2.8e-06 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 113
AfaI GTAC 3 cut(s) 14, 61, 273
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 6 cut(s) 73, 88, 221, 398, 575, 619
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 2 cut(s) 65, 147
AluI AGCT 2 cut(s) 65, 147
Alw26I GTCTC 1 cut(s) 408
ApeKI GCWGC 1 cut(s) 128
AseI ATTAAT 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 380
AsuII TTCGAA 1 cut(s) 256
BbvCI CCTCAGC 1 cut(s) 558
BbvI GCAGC 1 cut(s) 115
BccI CCATC 3 cut(s) 338, 464, 589
BciT130I CCWGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 408
BfmI CTRYAG 1 cut(s) 129
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme1390I CCNGG 1 cut(s) 296
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 443
BplI GAGNNNNNCTC 2 cut(s) 541, 573
Bpu10I CCTNAGC 1 cut(s) 558
Bpu14I TTCGAA 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 682
Bse3DI GCAATG 1 cut(s) 645
BseBI CCWGG 1 cut(s) 296
BseGI GGATG 4 cut(s) 100, 291, 343, 623
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMI GCAATG 1 cut(s) 645
BseMII CTCAG 1 cut(s) 572
BseNI ACTGG 1 cut(s) 682
BseXI GCAGC 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 408
Bsp119I TTCGAA 1 cut(s) 256
Bsp1407I TGTACA 2 cut(s) 12, 271
Bsp143I GATC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 571
BspHI TCATGA 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 38
BspMAI CTGCAG 1 cut(s) 133
BspT104I TTCGAA 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 645
BsrGI TGTACA 2 cut(s) 12, 271
BsrI ACTGG 1 cut(s) 682
BssMI GATC 1 cut(s) 43
BssNAI GTATAC 1 cut(s) 114
Bst1107I GTATAC 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 3 cut(s) 107, 118, 659
Bst6I CTCTTC 2 cut(s) 322, 605
BstAUI TGTACA 2 cut(s) 12, 271
BstBI TTCGAA 1 cut(s) 256
BstDEI CTNAG 1 cut(s) 558
BstF5I GGATG 4 cut(s) 100, 291, 343, 623
BstKTI GATC 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 294
BstSFI CTRYAG 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 115
BstZ17I GTATAC 1 cut(s) 114
BtsCI GGATG 4 cut(s) 100, 291, 343, 623
CciI TCATGA 1 cut(s) 169
Csp6I GTAC 3 cut(s) 13, 60, 272
CviAII CATG 3 cut(s) 101, 170, 231
CviJI RGCY 5 cut(s) 65, 128, 147, 210, 596
CviKI_1 RGCY 5 cut(s) 65, 128, 147, 210, 596
CviQI GTAC 3 cut(s) 13, 60, 272
DdeI CTNAG 1 cut(s) 558
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eam1104I CTCTTC 2 cut(s) 322, 605
EarI CTCTTC 2 cut(s) 322, 605
EcoRII CCWGG 1 cut(s) 294
FaeI CATG 3 cut(s) 104, 173, 234
FaiI YATR 8 cut(s) 102, 114, 171, 232, 240, 393, 684, 708
FatI CATG 3 cut(s) 100, 169, 230
FblI GTMKAC 1 cut(s) 113
Fnu4HI GCNGC 1 cut(s) 129
FokI GGATG 4 cut(s) 107, 278, 350, 610
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
Hin1II CATG 3 cut(s) 104, 173, 234
HinfI GANTC 2 cut(s) 449, 474
HphI GGTGA 1 cut(s) 380
Hpy166II GTNNAC 4 cut(s) 13, 15, 114, 306
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 2 cut(s) 55, 170
Hpy8I GTNNAC 4 cut(s) 13, 15, 114, 306
HpyAV CCTTC 4 cut(s) 82, 215, 263, 710
HpyCH4III ACNGT 3 cut(s) 107, 118, 659
HpyCH4V TGCA 4 cut(s) 131, 230, 317, 638
HpyF3I CTNAG 1 cut(s) 558
Hsp92II CATG 3 cut(s) 104, 173, 234
Kzo9I GATC 1 cut(s) 43
LpnPI CCDG 7 cut(s) 32, 133, 168, 281, 308, 549, 663
Lsp1109I GCAGC 1 cut(s) 115
LweI GCATC 1 cut(s) 443
MaeIII GTNAC 2 cut(s) 538, 698
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MboII GAAGA 5 cut(s) 241, 339, 458, 587, 622
MfeI CAATTG 1 cut(s) 398
MluCI AATT 6 cut(s) 162, 225, 398, 423, 495, 633
MlyI GAGTC 1 cut(s) 468
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 8 cut(s) 27, 85, 200, 208, 424, 520, 567, 606
MseI TTAA 3 cut(s) 122, 264, 498
MslI CAYNNNNRTG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 296
MunI CAATTG 1 cut(s) 398
MvaI CCWGG 1 cut(s) 296
NdeII GATC 1 cut(s) 43
NlaIII CATG 3 cut(s) 104, 173, 234
NlaIV GGNNCC 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 698
NspI RCATGY 1 cut(s) 234
NspV TTCGAA 1 cut(s) 256
PagI TCATGA 1 cut(s) 169
PfeI GAWTC 1 cut(s) 449
PfoI TCCNGGA 1 cut(s) 294
PkrI GCNGC 1 cut(s) 130
PleI GAGTC 1 cut(s) 468
PpsI GAGTC 1 cut(s) 468
PshBI ATTAAT 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 38
PstI CTGCAG 1 cut(s) 133
RsaI GTAC 3 cut(s) 14, 61, 273
RsaNI GTAC 3 cut(s) 13, 60, 272
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 3 cut(s) 122, 264, 498
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 1 cut(s) 43
SchI GAGTC 1 cut(s) 468
ScrFI CCNGG 1 cut(s) 296
SetI ASST 9 cut(s) 12, 38, 51, 67, 149, 219, 305, 559, 617
SfaNI GCATC 1 cut(s) 443
SfcI CTRYAG 1 cut(s) 129
SfuI TTCGAA 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 6 cut(s) 162, 225, 398, 423, 495, 633
SspI AATATT 2 cut(s) 27, 268
StyD4I CCNGG 1 cut(s) 294
TaaI ACNGT 3 cut(s) 107, 118, 659
TaqI TCGA 2 cut(s) 256, 351
TasI AATT 6 cut(s) 162, 225, 398, 423, 495, 633
TatI WGTACW 3 cut(s) 12, 59, 271
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 3 cut(s) 122, 264, 498
Tru9I TTAA 3 cut(s) 122, 264, 498
TseFI GTSAC 1 cut(s) 698
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 698
TspDTI ATGAA 4 cut(s) 111, 153, 158, 300
VspI ATTAAT 1 cut(s) 264
XceI RCATGY 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.