Rh3CG322600

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
34799458 .. 34800054
597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG322600.1

Sequence Viewer

Length: 288 bp
ATGTTCAAAATTGCATCCAAATTAATTGATGAGGCTGCAATTTCACCAGAGGGGACCGAACTTGTGCAAAAGGCATTTGAAGGACTTATGGAGCAAGTTAAGAAACTAAATCTTTCTGTTGGCCAAGCTTCTATCAACAATTATTCAGTAGGAACTTCTGAAGAGAATCGCTTCCTAGATCCTTCTCAAGTGAAGACTAAAGATTTGATAGGTCAGAGATTGTGGAAAATGATGTCGACAAAGCATTGGGTGAACAAGATTACTTGGTTGATGAACTATAACTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

95

Amino Acids

10.86

Weight (kDa)

8.96

Isoelectric Point (pI)

30.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 236
AclWI GGATC 1 cut(s) 173
AcoI YGGCCR 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 180
AgsI TTSAA 2 cut(s) 7, 80
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
AlwI GGATC 1 cut(s) 173
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 35
ArsI GACNNNNNNTTYG 2 cut(s) 187, 219
AseI ATTAAT 1 cut(s) 23
Asp700I GAANNNNTTC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 54
AsuHPI GGTGA 2 cut(s) 36, 262
AvaII GGWCC 1 cut(s) 54
BalI TGGCCA 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 22
BfaI CTAG 1 cut(s) 176
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 55
BmsI GCATC 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 200
BpuEI CTTGAG 1 cut(s) 171
BseGI GGATG 1 cut(s) 14
BseXI GCAGC 1 cut(s) 22
BshFI GGCC 1 cut(s) 123
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 178
BspANI GGCC 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 55
BspPI GGATC 1 cut(s) 173
BssMI GATC 1 cut(s) 178
Bst6I CTCTTC 1 cut(s) 156
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 200
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 1 cut(s) 123
BtsCI GGATG 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 54
CviJI RGCY 3 cut(s) 35, 123, 128
CviKI_1 RGCY 3 cut(s) 35, 123, 128
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 54
Eco57I CTGAAG 1 cut(s) 180
FaiI YATR 2 cut(s) 89, 279
FaqI GGGAC 1 cut(s) 67
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 176
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 1 cut(s) 123
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 1 cut(s) 166
HphI GGTGA 2 cut(s) 36, 262
Hpy166II GTNNAC 2 cut(s) 237, 253
Hpy188I TCNGA 2 cut(s) 160, 216
Hpy8I GTNNAC 2 cut(s) 237, 253
HpyAV CCTTC 2 cut(s) 74, 192
HpyCH4V TGCA 3 cut(s) 14, 38, 67
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 1 cut(s) 60
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 23
MaeI CTAG 1 cut(s) 176
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 2 cut(s) 173, 205
MflI RGATCY 1 cut(s) 178
MlsI TGGCCA 1 cut(s) 123
MluCI AATT 5 cut(s) 9, 20, 24, 39, 139
MluNI TGGCCA 1 cut(s) 123
MnlI CCTC 2 cut(s) 25, 43
Mox20I TGGCCA 1 cut(s) 123
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 123
MseI TTAA 2 cut(s) 23, 99
Msp20I TGGCCA 1 cut(s) 123
NdeII GATC 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 1 cut(s) 37
PshBI ATTAAT 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 54
PsuI RGATCY 1 cut(s) 178
SalI GTCGAC 1 cut(s) 235
SaqAI TTAA 2 cut(s) 23, 99
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 1 cut(s) 54
SetI ASST 2 cut(s) 130, 214
SfaNI GCATC 1 cut(s) 23
SgeI CNNG 8 cut(s) 59, 74, 107, 137, 188, 200, 268, 276
SinI GGWCC 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 5 cut(s) 9, 20, 24, 39, 139
SspMI CTAG 1 cut(s) 176
TaqI TCGA 1 cut(s) 236
TaqII GACCGA 1 cut(s) 71
TasI AATT 5 cut(s) 9, 20, 24, 39, 139
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 2 cut(s) 23, 99
Tru9I TTAA 2 cut(s) 23, 99
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 54
VspI ATTAAT 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 236
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.