Rroxscaffold_7G00191860

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000164
Physical Location & Seq
Reverse (-)
32743831 .. 32744927
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00191860.1

Sequence Viewer

Length: 729 bp
ATGTCAAGTAGTCAAAGAGCAGAGAGTCAACATTCTTTCTTCAAGAATTATGTTTCTAAGTGGAATTCATTGGTGGAATTTATGGTTCAGTTTAAAAGGGGATTTCTTCACCAACGACATTATGAGTTAGAGGAGGATCATATTAATATTGATGAGAAGGCAAAAACTGTCATGTCCCTTGACTTAGAAGATCATATGGCCAAGGTTTATACACGTAAACTATTTTATGAAGTTCAAGAACAGTTGAGAGAGAGCTTCAAATATAAACTTGAACTTGTGTTTGAAAATGTCACTCAAGAACAGTTTAAGTACATCTTGAAGAGATGGACTAAAGCTGCAAGACATAGAGTTGTGTTAGATTGTAATGGAATGGAGATAAAAGATAACAAAGCTTTACTTGCAAGGAGGACTAAACTATTCCAGCATGCTACATATGCAATTGATAAGGTTATGACCAACAATGCTACTATTCGGCATGTTTTTAATGAACCACATCAAGTGAGAGCAAAAGGGTGTGGGAGAAGGTTGAAGAAAGGAAAAGAGAAGAGGAAAGTTAATGTAAATGCCAGTCAAGGTAGGCAATGCCATGGATGTGGACTATTTGGTCAGTCACATGACAAAAGAAATTGTCCAACACTTCATGGAAGACCTGCTATTGATGAAAATGGTGATTCAAGTTCCACTCGTATGGATGAGGATAGTTGTTCATCATCTCATTTGGCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

242

Amino Acids

28.33

Weight (kDa)

9.37

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 603
Acc36I ACCTGC 1 cut(s) 658
AclWI GGATC 1 cut(s) 144
AcoI YGGCCR 1 cut(s) 198
AcsI RAATTY 2 cut(s) 64, 77
AfaI GTAC 1 cut(s) 311
AflIII ACRYGT 1 cut(s) 212
AgsI TTSAA 8 cut(s) 43, 236, 259, 272, 284, 319, 529, 675
AluBI AGCT 3 cut(s) 255, 335, 392
AluI AGCT 3 cut(s) 255, 335, 392
AlwI GGATC 1 cut(s) 144
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 2 cut(s) 64, 77
AseI ATTAAT 1 cut(s) 144
AsuHPI GGTGA 2 cut(s) 101, 680
BalI TGGCCA 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 652
BbvI GCAGC 1 cut(s) 322
BccI CCATC 1 cut(s) 318
BfuAI ACCTGC 1 cut(s) 658
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
BpiI GAAGAC 1 cut(s) 652
BpuEI CTTGAG 1 cut(s) 279
BsaAI YACGTR 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 201, 586
Bse1I ACTGG 1 cut(s) 567
Bse3DI GCAATG 1 cut(s) 587
BseDI CCNNGG 2 cut(s) 201, 586
BseGI GGATG 2 cut(s) 596, 697
BseMI GCAATG 1 cut(s) 587
BseNI ACTGG 1 cut(s) 567
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 1 cut(s) 322
BshFI GGCC 1 cut(s) 200
BslFI GGGAC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 160
BsnI GGCC 1 cut(s) 200
Bsp143I GATC 2 cut(s) 136, 190
Bsp19I CCATGG 1 cut(s) 586
BspANI GGCC 1 cut(s) 200
BspMI ACCTGC 1 cut(s) 658
BspPI GGATC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 587
BsrI ACTGG 1 cut(s) 567
BssECI CCNNGG 2 cut(s) 201, 586
BssMI GATC 2 cut(s) 136, 190
BssT1I CCWWGG 2 cut(s) 201, 586
Bst4CI ACNGT 3 cut(s) 169, 243, 303
Bst6I CTCTTC 2 cut(s) 314, 539
BstBAI YACGTR 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 2 cut(s) 57, 184
BstDSI CCRYGG 1 cut(s) 586
BstF5I GGATG 2 cut(s) 596, 697
BstKTI GATC 2 cut(s) 139, 193
BstMBI GATC 2 cut(s) 136, 190
BstMWI GCNNNNNNNGC 2 cut(s) 398, 434
BstNSI RCATGY 2 cut(s) 428, 479
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 652
BstXI CCANNNNNNTGG 2 cut(s) 593, 688
BsuRI GGCC 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 586
BtsCI GGATG 2 cut(s) 596, 697
BveI ACCTGC 1 cut(s) 658
Cac8I GCNNGC 1 cut(s) 426
Csp6I GTAC 1 cut(s) 310
CviAII CATG 6 cut(s) 172, 425, 476, 587, 614, 641
CviJI RGCY 4 cut(s) 200, 255, 335, 392
CviKI_1 RGCY 4 cut(s) 200, 255, 335, 392
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 2 cut(s) 57, 184
DpnI GATC 2 cut(s) 138, 192
DpnII GATC 2 cut(s) 136, 190
DraI TTTAAA 1 cut(s) 94
DrdI GACNNNNNNGTC 1 cut(s) 603
DseDI GACNNNNNNGTC 1 cut(s) 603
EaeI YGGCCR 1 cut(s) 198
Eam1104I CTCTTC 2 cut(s) 314, 539
EarI CTCTTC 2 cut(s) 314, 539
Eco130I CCWWGG 2 cut(s) 201, 586
EcoRI GAATTC 1 cut(s) 64
EcoT14I CCWWGG 2 cut(s) 201, 586
ErhI CCWWGG 2 cut(s) 201, 586
FaeI CATG 6 cut(s) 175, 428, 479, 590, 617, 644
FalI AAGNNNNNCTT 4 cut(s) 299, 331, 381, 413
FaqI GGGAC 1 cut(s) 160
FatI CATG 6 cut(s) 171, 424, 475, 586, 613, 640
FauNDI CATATG 2 cut(s) 195, 433
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 2 cut(s) 603, 704
Fsp4HI GCNGC 1 cut(s) 336
GluI GCNGC 1 cut(s) 336
HaeIII GGCC 1 cut(s) 200
Hin1II CATG 6 cut(s) 175, 428, 479, 590, 617, 644
HincII GTYRAC 1 cut(s) 29
HindII GTYRAC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 390
HinfI GANTC 2 cut(s) 25, 671
HphI GGTGA 2 cut(s) 101, 680
Hpy166II GTNNAC 3 cut(s) 29, 218, 596
Hpy188III TCNNGA 4 cut(s) 43, 236, 296, 316
Hpy8I GTNNAC 3 cut(s) 29, 218, 596
HpyAV CCTTC 2 cut(s) 151, 516
HpyCH4III ACNGT 3 cut(s) 169, 243, 303
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 3 cut(s) 338, 401, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 434
HpyF3I CTNAG 2 cut(s) 57, 184
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 6 cut(s) 175, 428, 479, 590, 617, 644
Kzo9I GATC 2 cut(s) 136, 190
LpnPI CCDG 3 cut(s) 434, 580, 663
Lsp1109I GCAGC 1 cut(s) 322
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 2 cut(s) 289, 609
MalI GATC 2 cut(s) 138, 192
MboI GATC 2 cut(s) 136, 190
MboII GAAGA 7 cut(s) 31, 98, 200, 331, 541, 556, 657
MfeI CAATTG 1 cut(s) 438
MlsI TGGCCA 1 cut(s) 200
MluCI AATT 5 cut(s) 46, 64, 77, 438, 625
MluNI TGGCCA 1 cut(s) 200
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 1 cut(s) 656
MnlI CCTC 5 cut(s) 124, 127, 399, 540, 688
Mox20I TGGCCA 1 cut(s) 200
MscI TGGCCA 1 cut(s) 200
MseI TTAA 5 cut(s) 93, 144, 306, 483, 555
MslI CAYNNNNRTG 2 cut(s) 591, 686
Msp20I TGGCCA 1 cut(s) 200
MunI CAATTG 1 cut(s) 438
MwoI GCNNNNNNNGC 2 cut(s) 398, 434
NcoI CCATGG 1 cut(s) 586
NdeI CATATG 2 cut(s) 195, 433
NdeII GATC 2 cut(s) 136, 190
NlaIII CATG 6 cut(s) 175, 428, 479, 590, 617, 644
NmuCI GTSAC 2 cut(s) 289, 609
NspI RCATGY 2 cut(s) 428, 479
PaeI GCATGC 1 cut(s) 428
PfeI GAWTC 1 cut(s) 671
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 1 cut(s) 33
PpsI GAGTC 1 cut(s) 33
Ppu21I YACGTR 1 cut(s) 215
PshBI ATTAAT 1 cut(s) 144
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
RseI CAYNNNNRTG 2 cut(s) 591, 686
SaqAI TTAA 5 cut(s) 93, 144, 306, 483, 555
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 136, 190
SchI GAGTC 1 cut(s) 34
SetI ASST 9 cut(s) 207, 217, 257, 337, 394, 450, 527, 577, 652
SmiMI CAYNNNNRTG 2 cut(s) 591, 686
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
SphI GCATGC 1 cut(s) 428
Sse9I AATT 5 cut(s) 46, 64, 77, 438, 625
SspI AATATT 1 cut(s) 148
StyI CCWWGG 2 cut(s) 201, 586
TaaI ACNGT 3 cut(s) 169, 243, 303
TaiI ACGT 1 cut(s) 217
TasI AATT 5 cut(s) 46, 64, 77, 438, 625
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 1 cut(s) 671
Tru1I TTAA 5 cut(s) 93, 144, 306, 483, 555
Tru9I TTAA 5 cut(s) 93, 144, 306, 483, 555
TseFI GTSAC 2 cut(s) 289, 609
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 2 cut(s) 289, 609
TspDTI ATGAA 6 cut(s) 57, 243, 501, 629, 675, 696
VspI ATTAAT 1 cut(s) 144
XapI RAATTY 2 cut(s) 64, 77
XceI RCATGY 2 cut(s) 428, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.