Rw1G009190

Protein FAR1-RELATED SEQUENCE 5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000164
Physical Location & Seq
Forward (+)
20264769 .. 20266676
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G009190.1

Sequence Viewer

Length: 1155 bp
ATGGAGTCAGAGGATGATCAAGTTTATATTCCTCAAGTGAAGGCAGAGTTGATGCCTAAATTATACCAAGAGTTTGAAACAATAGATGATGTTGCTGCTTTCTACAATAGATATGCAAAAGAAGCACGGTTTAGTATTAGAAGTCATTCTAGTGTGACCAGCAAAGATAAGAAACAACTTATGAGGAAGGAGTATGTTTGTTATAAGCAAGGAGATTCCAAAGTTGAAAGAGAAAAGCAAGTTAACACAGTTCTATCACAGCAACTAAGCTTGGTGAATGTGGAGAAACATAAACAGTTTGAATTCTTTGGTGTTCAGGCAGGTGGCATTCAAAATATTGGTTTTATACAACTTGATCTATATAATTATGGAAGAACTTGTCGTGAAGAGAAGAAGGGGCGTGATGGAGATCTACTGTACATGCTTTTTGAGAATGAGAAAGAAAAAGATTCTTCTTTTGTCTATACAATGGATGGAGATGAGGAAAACAGAGTAACATGCTTTTATGGATATGTAGTTATCTTTGATACTACATACAACACAAATCGGTATGGAAGGATTTTTGCACCATTTACTGGTGTTAACAATCATGGGCAGACAATCATCTTTGCTTGTGCATTCTTGAATGATGAGACAACCGATACTTTTGTTTGGTCATTCAAGGAATTTCTAAATGCTATGCCAGGAGATGCACCAGAAAATACCCCTAAGATGATCATTACCGACCAAGATCCTGCTATGACTAAAGCCATTTCAGAAAGGGGACTTCTTCACCAACGCCATTCTGAGTTAGAGGAAGATCATATTAATATTGATGAGAAGGCAAAAACTGTTTATACAAGTAAACTATTTTATGAAGTTCAAGAACAGTTGAGAGAGAGCTTCAAATATAAACTAGAACTTATGTTTGAAAATATCCAAGATGTTGATAAATTGCCTATTCAGTACATCTTGAAGAGATGGACTAAAGCTGCAAGACAGAGAGTTGTGATAGATTCTGATGGAATGGAGATAAAAGATAACAAAGCTTTACTTGCAAGGAGGACTAAACTATTCCAGCATGCCAAATATGCAATTGATAAGGTTATAGTGAGTGATGAGGCTACACAGCTCTTTATGGAAGCATTGGATGCTTTTTTGGAGAATATATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

384

Amino Acids

44.95

Weight (kDa)

5.27

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 34 - 79 2.6e-08 FAR1 DNA-binding domain
MULE PF10551 172 - 253 1e-19 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AarI CACCTGC 1 cut(s) 311
Acc36I ACCTGC 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 575
AclWI GGATC 1 cut(s) 725
AcsI RAATTY 2 cut(s) 302, 665
AfaI GTAC 2 cut(s) 419, 947
AfiI CCNNNNNNNGG 1 cut(s) 575
AjnI CCWGG 1 cut(s) 682
AluBI AGCT 5 cut(s) 270, 882, 971, 1028, 1111
AluI AGCT 5 cut(s) 270, 882, 971, 1028, 1111
Alw26I GTCTC 1 cut(s) 626
AlwI GGATC 1 cut(s) 725
ApeKI GCWGC 2 cut(s) 95, 971
ApoI RAATTY 2 cut(s) 302, 665
AseI ATTAAT 1 cut(s) 807
Asp700I GAANNNNTTC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 286, 764
BaeI ACNNNNGTAYC 2 cut(s) 633, 666
BbvI GCAGC 2 cut(s) 82, 958
BccI CCATC 4 cut(s) 398, 467, 954, 995
BciT130I CCWGG 1 cut(s) 684
BclI TGATCA 2 cut(s) 16, 714
BcoDI GTCTC 1 cut(s) 626
BfaI CTAG 2 cut(s) 150, 896
BfuAI ACCTGC 1 cut(s) 311
BglII AGATCT 1 cut(s) 409
BisI GCNGC 2 cut(s) 96, 972
BlsI GCNGC 2 cut(s) 97, 973
Bme1390I CCNGG 1 cut(s) 684
BmrFI CCNGG 1 cut(s) 684
BmsI GCATC 3 cut(s) 42, 679, 1120
BpuEI CTTGAG 1 cut(s) 18
BsaBI GATNNNNATC 1 cut(s) 408
Bsc4I CCNNNNNNNGG 1 cut(s) 575
Bse1I ACTGG 1 cut(s) 580
Bse8I GATNNNNATC 1 cut(s) 408
BseBI CCWGG 1 cut(s) 684
BseGI GGATG 3 cut(s) 19, 478, 1135
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 1 cut(s) 575
BseMII CTCAG 1 cut(s) 777
BseNI ACTGG 1 cut(s) 580
BseXI GCAGC 2 cut(s) 82, 958
BslFI GGGAC 1 cut(s) 777
BslI CCNNNNNNNGG 1 cut(s) 575
BsmAI GTCTC 1 cut(s) 626
BsmFI GGGAC 1 cut(s) 777
BsmI GAATGC 2 cut(s) 327, 617
Bsp1407I TGTACA 1 cut(s) 417
Bsp143I GATC 6 cut(s) 16, 355, 409, 714, 730, 799
BspCNI CTCAG 1 cut(s) 778
BspMI ACCTGC 1 cut(s) 311
BspPI GGATC 1 cut(s) 725
BsrGI TGTACA 1 cut(s) 417
BsrI ACTGG 1 cut(s) 580
BssMI GATC 6 cut(s) 16, 355, 409, 714, 730, 799
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 6 cut(s) 129, 250, 297, 417, 832, 870
Bst6I CTCTTC 2 cut(s) 381, 950
BstAPI GCANNNNNTGC 1 cut(s) 1130
BstAUI TGTACA 1 cut(s) 417
BstC8I GCNNGC 1 cut(s) 1062
BstDEI CTNAG 3 cut(s) 266, 708, 786
BstF5I GGATG 3 cut(s) 19, 478, 1135
BstKTI GATC 6 cut(s) 19, 358, 412, 717, 733, 802
BstMAI GTCTC 1 cut(s) 626
BstMBI GATC 6 cut(s) 16, 355, 409, 714, 730, 799
BstMWI GCNNNNNNNGC 4 cut(s) 122, 1034, 1070, 1130
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 3 cut(s) 424, 501, 1064
BstSCI CCNGG 1 cut(s) 682
BstV1I GCAGC 2 cut(s) 82, 958
BstX2I RGATCY 2 cut(s) 409, 730
BstYI RGATCY 2 cut(s) 409, 730
BtsCI GGATG 3 cut(s) 19, 478, 1135
BveI ACCTGC 1 cut(s) 311
Cac8I GCNNGC 1 cut(s) 1062
Csp6I GTAC 2 cut(s) 418, 946
CviAII CATG 4 cut(s) 421, 498, 590, 1061
CviJI RGCY 7 cut(s) 270, 749, 882, 971, 1028, 1103, 1111
CviKI_1 RGCY 7 cut(s) 270, 749, 882, 971, 1028, 1103, 1111
CviQI GTAC 2 cut(s) 418, 946
DdeI CTNAG 3 cut(s) 266, 708, 786
DpnI GATC 6 cut(s) 18, 357, 411, 716, 732, 801
DpnII GATC 6 cut(s) 16, 355, 409, 714, 730, 799
Eam1104I CTCTTC 2 cut(s) 381, 950
EarI CTCTTC 2 cut(s) 381, 950
EcoRI GAATTC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 682
FaeI CATG 4 cut(s) 424, 501, 593, 1064
FalI AAGNNNNNCTT 2 cut(s) 1017, 1049
FaqI GGGAC 1 cut(s) 777
FatI CATG 4 cut(s) 420, 497, 589, 1060
FbaI TGATCA 2 cut(s) 16, 714
Fnu4HI GCNGC 2 cut(s) 96, 972
FokI GGATG 3 cut(s) 26, 485, 1142
Fsp4HI GCNGC 2 cut(s) 96, 972
FspBI CTAG 2 cut(s) 150, 896
GluI GCNGC 2 cut(s) 96, 972
Hin1II CATG 4 cut(s) 424, 501, 593, 1064
HincII GTYRAC 2 cut(s) 244, 583
HindII GTYRAC 2 cut(s) 244, 583
HindIII AAGCTT 2 cut(s) 268, 1026
HinfI GANTC 4 cut(s) 5, 215, 449, 995
HpaI GTTAAC 2 cut(s) 244, 583
HphI GGTGA 2 cut(s) 286, 764
Hpy166II GTNNAC 3 cut(s) 244, 583, 845
Hpy188I TCNGA 4 cut(s) 10, 757, 787, 1000
Hpy188III TCNNGA 4 cut(s) 383, 622, 863, 952
Hpy8I GTNNAC 3 cut(s) 244, 583, 845
HpyAV CCTTC 5 cut(s) 34, 181, 388, 549, 814
HpyCH4III ACNGT 6 cut(s) 129, 250, 297, 417, 832, 870
HpyCH4V TGCA 7 cut(s) 116, 566, 617, 692, 974, 1037, 1073
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 1034, 1070, 1130
HpyF3I CTNAG 3 cut(s) 266, 708, 786
Hsp92II CATG 4 cut(s) 424, 501, 593, 1064
Ksp22I TGATCA 2 cut(s) 16, 714
KspAI GTTAAC 2 cut(s) 244, 583
Kzo9I GATC 6 cut(s) 16, 355, 409, 714, 730, 799
LpnPI CCDG 9 cut(s) 172, 302, 306, 561, 669, 696, 708, 747, 1070
Lsp1109I GCAGC 2 cut(s) 82, 958
LweI GCATC 3 cut(s) 42, 679, 1120
MaeI CTAG 2 cut(s) 150, 896
MaeIII GTNAC 2 cut(s) 154, 493
MalI GATC 6 cut(s) 18, 357, 411, 716, 732, 801
MboI GATC 6 cut(s) 16, 355, 409, 714, 730, 799
MboII GAAGA 7 cut(s) 384, 398, 403, 444, 761, 809, 967
MfeI CAATTG 1 cut(s) 1074
MflI RGATCY 2 cut(s) 409, 730
MluCI AATT 6 cut(s) 59, 302, 364, 665, 932, 1074
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 7 cut(s) 4, 42, 177, 475, 787, 1035, 1093
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 4 cut(s) 243, 582, 807, 1153
MslI CAYNNNNRTG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 684
MunI CAATTG 1 cut(s) 1074
Mva1269I GAATGC 2 cut(s) 327, 617
MvaI CCWGG 1 cut(s) 684
MwoI GCNNNNNNNGC 4 cut(s) 122, 1034, 1070, 1130
NdeII GATC 6 cut(s) 16, 355, 409, 714, 730, 799
NlaIII CATG 4 cut(s) 424, 501, 593, 1064
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 3 cut(s) 424, 501, 1064
PaeI GCATGC 1 cut(s) 1064
PaqCI CACCTGC 1 cut(s) 311
PctI GAATGC 2 cut(s) 327, 617
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 3 cut(s) 215, 449, 995
PflMI CCANNNNNTGG 1 cut(s) 575
PkrI GCNGC 2 cut(s) 97, 973
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PshBI ATTAAT 1 cut(s) 807
PsiI TTATAA 1 cut(s) 204
Psp6I CCWGG 1 cut(s) 682
PspGI CCWGG 1 cut(s) 682
PsuI RGATCY 2 cut(s) 409, 730
RsaI GTAC 2 cut(s) 419, 947
RsaNI GTAC 2 cut(s) 418, 946
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 4 cut(s) 243, 582, 807, 1153
SatI GCNGC 2 cut(s) 96, 972
Sau3AI GATC 6 cut(s) 16, 355, 409, 714, 730, 799
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 684
SetI ASST 7 cut(s) 272, 325, 884, 973, 1030, 1086, 1113
SfaNI GCATC 3 cut(s) 42, 679, 1120
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
SphI GCATGC 1 cut(s) 1064
Sse9I AATT 6 cut(s) 59, 302, 364, 665, 932, 1074
SspI AATATT 2 cut(s) 337, 811
SspMI CTAG 2 cut(s) 150, 896
StyD4I CCNGG 1 cut(s) 682
TaaI ACNGT 6 cut(s) 129, 250, 297, 417, 832, 870
TasI AATT 6 cut(s) 59, 302, 364, 665, 932, 1074
TatI WGTACW 2 cut(s) 417, 945
TfiI GAWTC 3 cut(s) 215, 449, 995
Tru1I TTAA 4 cut(s) 243, 582, 807, 1153
Tru9I TTAA 4 cut(s) 243, 582, 807, 1153
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 2 cut(s) 95, 971
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 1 cut(s) 870
Van91I CCANNNNNTGG 1 cut(s) 575
VspI ATTAAT 1 cut(s) 807
XapI RAATTY 2 cut(s) 302, 665
XceI RCATGY 3 cut(s) 424, 501, 1064
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 2 cut(s) 150, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.