Rroxscaffold_3G00224980

Protein FAR1-RELATED SEQUENCE 5-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
8231479 .. 8234387
2909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224980.1

Sequence Viewer

Length: 624 bp
ATGATAGTTGTGAGAGACAAGTCTGGTGGATTTGTAGTCAATATATTTGATGAAGCTCACACTCATCCTATGATAAGTCCAAAAAGACTCCACTTGCTGAAGTCCAATTGTCGACTTACTAAAGCTCAGAGATCATTATGGGAACAACTATCCATGGTAAACATACCCACACACCAGCAATTTGACATTCTTGGAGTGCAAGCAGGTGGATTTCAGTACATTGGTTGTACACAACAAGATTTGTACAATCTTGAAAGGGATAAGTGTAAAGAGACAAAAGGGCATGATGGAGAAATGTTGCATGACTACTTTCTGCTAGAGCAAGAAAAAAATTCCGGGTTCTTTTTCACAATAAAGGCAGATGTTGAAAATAGGATTACTCATTGTTTTTGGGCTGATGCAATTTCGAGACAGTCGTATAAGTTTTACGGTGATGTGATTATCTTTGACACAACATACCAAACCAATCGGTATAGTTTGATTTTTGCACCATTGATGGGGATAAATAACCATGGTCAGACAATTGTGTTTGGAGCTGCATTCTTAAGTGACGTGACTACAACTTCGTTTGTGTGGTTGTTGAAAGAATTTTTGAATGCTATGCCAGGGGTCCTCCTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

207

Amino Acids

23.79

Weight (kDa)

6.7

Isoelectric Point (pI)

29.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 110 - 202 8e-07 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 146 - 201 2.1e-11 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000164)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g02320 FvH4_1g21472 FvH4_2g00813 FvH4_2g02512 FvH4_2g03921 FvH4_2g23460 FvH4_3g29141 FvH4_4g05791 FvH4_4g06321 FvH4_4g15595 FvH4_4g18162 FvH4_4g18163 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_4g29541 FvH4_5g31093 FvH4_6g01982 FvH4_6g21931 FvH4_6g44691 FvH4_6g48541
prunus_persica Prupe.1G074100_v2.0.a1 Prupe.3G021400_v2.0.a1
pyrus_communis pycom02g18570 pycom14g00670
rosa_chinensis RchiOBHm_Chr1g0379201 RchiOBHm_Chr1g0379361 RchiOBHm_Chr4g0405981 RchiOBHm_Chr5g0073641 RchiOBHm_Chr5g0073651 RchiOBHm_Chr7g0236661
rosa_multiflora Rmu_co8179562.1_g000001 Rmu_co8343647.1_g000001 Rmu_sc0000041.1_g000017 Rmu_sc0000114.1_g000020 Rmu_sc0000286.1_g000006 Rmu_sc0000308.1_g000038 Rmu_sc0000365.1_g000061 Rmu_sc0000365.1_g000062 Rmu_sc0000538.1_g000060 Rmu_sc0000538.1_g000061 Rmu_sc0000586.1_g000016 Rmu_sc0000898.1_g000007 Rmu_sc0000913.1_g000003 Rmu_sc0000913.1_g000004 Rmu_sc0000996.1_g000006 Rmu_sc0000996.1_g000007 Rmu_sc0000998.1_g000003 Rmu_sc0001350.1_g000009 Rmu_sc0002079.1_g000009 Rmu_sc0002200.1_g000013 Rmu_sc0002226.1_g000025 Rmu_sc0002279.1_g000014 Rmu_sc0002478.1_g000014 Rmu_sc0002717.1_g000004 Rmu_sc0002868.1_g000027 Rmu_sc0002889.1_g000043 Rmu_sc0003023.1_g000001 Rmu_sc0003110.1_g000006 Rmu_sc0003226.1_g000028 Rmu_sc0003226.1_g000029 Rmu_sc0003337.1_g000053 Rmu_sc0003558.1_g000007 Rmu_sc0004345.1_g000014 Rmu_sc0004383.1_g000007 Rmu_sc0004888.1_g000021 Rmu_sc0005114.1_g000012 Rmu_sc0005223.1_g000019 Rmu_sc0005223.1_g000020 Rmu_sc0005639.1_g000025 Rmu_sc0005685.1_g000027 Rmu_sc0005992.1_g000002 Rmu_sc0006326.1_g000034 Rmu_sc0006326.1_g000035 Rmu_sc0007390.1_g000012 Rmu_sc0007451.1_g000006 Rmu_sc0007825.1_g000003 Rmu_sc0008600.1_g000023 Rmu_sc0009291.1_g000003 Rmu_sc0012046.1_g000001 Rmu_sc0012046.1_g000002 Rmu_sc0012710.1_g000001 Rmu_sc0015238.1_g000001 Rmu_sc0016125.1_g000003 Rmu_sc0016175.1_g000001 Rmu_sc0016898.1_g000001 Rmu_sc0017323.1_g000010 Rmu_sc0017874.1_g000002 Rmu_sc0019167.1_g000001 Rmu_sc0020815.1_g000006 Rmu_sc0025564.1_g000001 Rmu_sc0026418.1_g000001 Rmu_sc0035188.1_g000002 Rmu_sc0039254.1_g000001 Rmu_ssc0000120.1_g000015 Rmu_ssc0000120.1_g000016 Rmu_ssc0000330.1_g000023 Rmu_ssc0000433.1_g000004
rosa_roxburghii Rroxscaffold_1G00047130 Rroxscaffold_1G00051320 Rroxscaffold_1G00056600 Rroxscaffold_2G00109650 Rroxscaffold_2G00119980 Rroxscaffold_3G00222550 Rroxscaffold_3G00224980 Rroxscaffold_3G00251020 Rroxscaffold_6G00411190 Rroxscaffold_7G00166520 Rroxscaffold_7G00172920 Rroxscaffold_7G00191860 Rroxscaffold_7G00194430
rosa_rugosa Rorug01G0198900 Rorug01G0217300 Rorug01G0244500 Rorug02G0147400 Rorug02G0152200 Rorug02G0595500 Rorug02G0595600 Rorug03G0060500 Rorug03G0203000 Rorug03G0285800 Rorug04G0027200 Rorug04G0027300 Rorug04G0225800 Rorug05G0073400 Rorug05G0213300 Rorug05G0324600 Rorug05G0390900 Rorug05G0391000 Rorug05G0391100 Rorug05G0391200 Rorug05G0462900 Rorug05G0473000 Rorug06G0256500 Rorug07G0199000 Rorug07G0208800 Rorug07G0208800 Rorug07G0316600 Rorug07G0316700
rosa_samantha Rh2BG532400 Rh2CG581900 Rh3CG322600 Rh6AG079900 Rh6AG250800 Rh6AG496300 Rh6BG506100 Rh6CG126000 Rh6CG511700 Rh6DG109400 Rh6DG112700 Rh7CG104500 Rh7CG322000 Rh7CG431500
rosa_wichuraiana Rw0G020410 Rw1G009190 Rw1G014580 Rw1G021000 Rw1G022190 Rw2G025900 Rw2G029920 Rw2G037530 Rw3G018560 Rw3G020560 Rw4G008500 Rw4G022520 Rw5G019030 Rw5G031180 Rw5G044830 Rw6G005010 Rw6G006890 Rw6G011330 Rw6G011380 Rw6G023900 Rw7G028490 Rw7G030170 Rw7G030370 Rw7G032030 Rw7G032040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 194
Acc36I ACCTGC 1 cut(s) 194
AccI GTMKAC 1 cut(s) 112
AcsI RAATTY 2 cut(s) 331, 587
AcuI CTGAAG 1 cut(s) 119
AfaI GTAC 3 cut(s) 218, 229, 245
AfiI CCNNNNNNNGG 1 cut(s) 497
AflII CTTAAG 1 cut(s) 544
AgsI TTSAA 4 cut(s) 254, 368, 583, 595
AjiI CACGTC 1 cut(s) 553
AjnI CCWGG 1 cut(s) 604
AluBI AGCT 3 cut(s) 56, 125, 536
AluI AGCT 3 cut(s) 56, 125, 536
Alw26I GTCTC 3 cut(s) 9, 266, 403
ApeKI GCWGC 1 cut(s) 536
ApoI RAATTY 2 cut(s) 331, 587
ArsI GACNNNNNNTTYG 2 cut(s) 547, 579
AspS9I GGNCC 1 cut(s) 610
AsuC2I CCSGG 1 cut(s) 337
AsuHPI GGTGA 1 cut(s) 443
AvaII GGWCC 1 cut(s) 610
BbvI GCAGC 1 cut(s) 523
BccI CCATC 2 cut(s) 281, 490
BciT130I CCWGG 1 cut(s) 606
BcnI CCSGG 1 cut(s) 337
BcoDI GTCTC 3 cut(s) 9, 266, 403
BfaI CTAG 1 cut(s) 317
BfrI CTTAAG 1 cut(s) 544
BfuAI ACCTGC 1 cut(s) 194
BisI GCNGC 1 cut(s) 537
BlsI GCNGC 1 cut(s) 538
Bme1390I CCNGG 2 cut(s) 337, 606
Bme18I GGWCC 1 cut(s) 610
BmgBI CACGTC 1 cut(s) 553
BmgT120I GGNCC 1 cut(s) 610
BmiI GGNNCC 1 cut(s) 611
BmrFI CCNGG 2 cut(s) 337, 606
BmsI GCATC 1 cut(s) 388
BpuMI CCSGG 1 cut(s) 337
BsaJI CCNNGG 3 cut(s) 153, 511, 605
Bsc4I CCNNNNNNNGG 1 cut(s) 497
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 3 cut(s) 153, 511, 605
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 497
BseMII CTCAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 523
BsiSI CCGG 1 cut(s) 336
BslI CCNNNNNNNGG 1 cut(s) 497
BsmAI GTCTC 3 cut(s) 9, 266, 403
BsmI GAATGC 2 cut(s) 539, 601
Bsp1407I TGTACA 2 cut(s) 227, 243
Bsp143I GATC 1 cut(s) 131
Bsp19I CCATGG 2 cut(s) 153, 511
BspCNI CTCAG 1 cut(s) 139
BspLI GGNNCC 1 cut(s) 611
BspMI ACCTGC 1 cut(s) 194
BspTI CTTAAG 1 cut(s) 544
BsrGI TGTACA 2 cut(s) 227, 243
BssECI CCNNGG 3 cut(s) 153, 511, 605
BssMI GATC 1 cut(s) 131
BssT1I CCWWGG 2 cut(s) 153, 511
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 2 cut(s) 414, 431
BstAFI CTTAAG 1 cut(s) 544
BstAUI TGTACA 2 cut(s) 227, 243
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 126
BstDSI CCRYGG 2 cut(s) 153, 511
BstF5I GGATG 1 cut(s) 64
BstKTI GATC 1 cut(s) 134
BstMAI GTCTC 3 cut(s) 9, 266, 403
BstMBI GATC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 606
BstSCI CCNGG 2 cut(s) 335, 604
BstV1I GCAGC 1 cut(s) 523
BtgI CCRYGG 2 cut(s) 153, 511
BtrI CACGTC 1 cut(s) 553
BtsCI GGATG 1 cut(s) 64
BveI ACCTGC 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 610
Csp6I GTAC 3 cut(s) 217, 228, 244
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 4 cut(s) 154, 284, 302, 512
CviJI RGCY 4 cut(s) 56, 125, 395, 536
CviKI_1 RGCY 4 cut(s) 56, 125, 395, 536
CviQI GTAC 3 cut(s) 217, 228, 244
DdeI CTNAG 1 cut(s) 126
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
Eco130I CCWWGG 2 cut(s) 153, 511
Eco47I GGWCC 1 cut(s) 610
Eco57I CTGAAG 1 cut(s) 119
EcoO109I RGGNCCY 1 cut(s) 610
EcoRII CCWGG 1 cut(s) 604
EcoT14I CCWWGG 2 cut(s) 153, 511
ErhI CCWWGG 2 cut(s) 153, 511
FaeI CATG 4 cut(s) 157, 287, 305, 515
FatI CATG 4 cut(s) 153, 283, 301, 511
FblI GTMKAC 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 537
FokI GGATG 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 537
FspBI CTAG 1 cut(s) 317
GluI GCNGC 1 cut(s) 537
HapII CCGG 1 cut(s) 336
Hin1II CATG 4 cut(s) 157, 287, 305, 515
HincII GTYRAC 1 cut(s) 113
HindII GTYRAC 1 cut(s) 113
HinfI GANTC 1 cut(s) 87
HpaII CCGG 1 cut(s) 336
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 3 cut(s) 113, 160, 230
Hpy188I TCNGA 2 cut(s) 129, 519
Hpy188III TCNNGA 2 cut(s) 251, 408
Hpy8I GTNNAC 3 cut(s) 113, 160, 230
HpyCH4III ACNGT 2 cut(s) 414, 431
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 5 cut(s) 199, 301, 401, 488, 539
HpyF3I CTNAG 1 cut(s) 126
HpySE526I ACGT 1 cut(s) 552
Hsp92II CATG 4 cut(s) 157, 287, 305, 515
Kzo9I GATC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 533
LpnPI CCDG 6 cut(s) 9, 188, 189, 349, 591, 618
Lsp1109I GCAGC 1 cut(s) 523
LweI GCATC 1 cut(s) 388
MaeI CTAG 1 cut(s) 317
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 2 cut(s) 548, 553
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MfeI CAATTG 2 cut(s) 106, 522
MluCI AATT 6 cut(s) 106, 179, 331, 402, 522, 587
MlyI GAGTC 1 cut(s) 81
MnlI CCTC 1 cut(s) 623
MseI TTAA 1 cut(s) 545
MspCI CTTAAG 1 cut(s) 544
MspI CCGG 1 cut(s) 336
MspR9I CCNGG 2 cut(s) 337, 606
MunI CAATTG 2 cut(s) 106, 522
Mva1269I GAATGC 2 cut(s) 539, 601
MvaI CCWGG 1 cut(s) 606
NciI CCSGG 1 cut(s) 337
NcoI CCATGG 2 cut(s) 153, 511
NdeII GATC 1 cut(s) 131
NlaIII CATG 4 cut(s) 157, 287, 305, 515
NlaIV GGNNCC 1 cut(s) 611
NmuCI GTSAC 2 cut(s) 548, 553
PaqCI CACCTGC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PctI GAATGC 2 cut(s) 539, 601
PkrI GCNGC 1 cut(s) 538
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
PpuMI RGGWCCY 1 cut(s) 610
Psp5II RGGWCCY 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 1 cut(s) 611
PspPI GGNCC 1 cut(s) 610
PspPPI RGGWCCY 1 cut(s) 610
RsaI GTAC 3 cut(s) 218, 229, 245
RsaNI GTAC 3 cut(s) 217, 228, 244
SalI GTCGAC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 1 cut(s) 537
Sau3AI GATC 1 cut(s) 131
Sau96I GGNCC 1 cut(s) 610
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 2 cut(s) 337, 606
SetI ASST 5 cut(s) 58, 127, 208, 538, 555
SfaNI GCATC 1 cut(s) 388
SinI GGWCC 1 cut(s) 610
SmlI CTYRAG 1 cut(s) 544
SmoI CTYRAG 1 cut(s) 544
Sse9I AATT 6 cut(s) 106, 179, 331, 402, 522, 587
SspMI CTAG 1 cut(s) 317
StyD4I CCNGG 2 cut(s) 335, 604
StyI CCWWGG 2 cut(s) 153, 511
TaaI ACNGT 2 cut(s) 414, 431
TaiI ACGT 1 cut(s) 555
TaqI TCGA 2 cut(s) 112, 407
TasI AATT 6 cut(s) 106, 179, 331, 402, 522, 587
TatI WGTACW 3 cut(s) 216, 227, 243
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TseFI GTSAC 2 cut(s) 548, 553
TseI GCWGC 1 cut(s) 536
Tsp45I GTSAC 2 cut(s) 548, 553
TspDTI ATGAA 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 610
XapI RAATTY 2 cut(s) 331, 587
XmiI GTMKAC 1 cut(s) 112
XspI CTAG 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.